Wall clock time and date at job start Mon Mar 30 2020 03:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47310 * 2 1 4 4 C 1.50699 * 109.47135 * 119.99749 * 2 1 3 5 5 O 1.21302 * 119.99763 * 119.99960 * 4 2 1 6 6 N 1.34772 * 120.00409 * 300.00201 * 4 2 1 7 7 C 1.37096 * 120.00005 * 180.02562 * 6 4 2 8 8 H 1.08003 * 120.00358 * 359.97438 * 7 6 4 9 9 C 1.38957 * 119.99807 * 179.97438 * 7 6 4 10 10 N 1.31412 * 119.99974 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99910 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46884 * 90.00541 * 11 9 7 13 13 H 1.48504 * 109.46733 * 210.00169 * 11 9 7 14 14 H 1.48493 * 109.47108 * 330.00182 * 11 9 7 15 15 C 1.50697 * 109.47026 * 239.99954 * 2 1 3 16 16 C 1.38678 * 120.42012 * 120.00088 * 15 2 1 17 17 C 1.38625 * 118.42261 * 180.02562 * 16 15 2 18 18 C 1.38222 * 119.16079 * 359.97438 * 17 16 15 19 19 N 1.31852 * 120.76489 * 0.02562 * 18 17 16 20 20 C 1.31887 * 121.72468 * 359.97438 * 19 18 17 21 21 H 1.08994 * 109.47000 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46504 * 299.99845 * 1 2 3 23 23 H 1.08994 * 109.46817 * 59.99838 * 1 2 3 24 24 H 0.96998 * 120.00161 * 359.97438 * 6 4 2 25 25 H 0.96998 * 120.00400 * 179.97438 * 10 9 7 26 26 H 1.08003 * 120.78653 * 0.29511 * 16 15 2 27 27 H 1.07998 * 120.41681 * 180.02562 * 17 16 15 28 28 H 1.07997 * 119.61999 * 179.97438 * 18 17 16 29 29 H 1.08001 * 119.61657 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7297 -1.6966 1.1192 6 7 1.7068 -0.2499 2.4546 7 6 2.1643 -0.8959 3.5739 8 1 2.7852 -1.7740 3.4749 9 6 1.8290 -0.4209 4.8360 10 7 2.2671 -1.0404 5.9090 11 14 0.7556 1.0983 5.0074 12 1 -0.6722 0.6928 5.0533 13 1 1.1075 1.8141 6.2600 14 1 0.9784 1.9954 3.8452 15 6 2.0323 -0.7104 -1.2304 16 6 2.8301 -0.0449 -2.1490 17 6 3.2687 -0.7381 -3.2665 18 6 2.8993 -2.0604 -3.4267 19 7 2.1392 -2.6614 -2.5325 20 6 1.7038 -2.0331 -1.4577 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5139 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 1.1494 0.5389 2.5436 25 1 2.0334 -0.7086 6.7900 26 1 3.1069 0.9877 -1.9951 27 1 3.8918 -0.2514 -4.0022 28 1 3.2364 -2.6073 -4.2947 29 1 1.0826 -2.5584 -0.7474 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610424938.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:34 Heat of formation + Delta-G solvation = -30.159922 kcal Electronic energy + Delta-G solvation = -14411.221639 eV Core-core repulsion = 11912.164603 eV Total energy + Delta-G solvation = -2499.057036 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.43455 -40.03137 -36.14138 -35.40762 -33.74671 -32.97044 -30.62535 -27.20435 -25.57407 -24.41591 -23.13782 -21.11878 -20.14324 -18.00410 -17.89702 -17.05319 -16.83158 -16.09635 -15.63108 -15.21595 -14.82799 -14.64891 -14.49925 -14.10017 -13.90110 -13.56218 -13.17885 -12.97368 -12.45591 -12.39451 -12.20346 -11.96625 -11.52637 -10.75159 -10.35624 -10.32798 -10.26448 -9.82819 -8.42850 -6.04327 0.24516 0.42655 1.29363 1.35054 1.44130 1.91746 2.22193 2.75985 3.09472 3.14201 3.50254 3.76535 3.92052 4.11820 4.13939 4.28287 4.31670 4.46631 4.70499 4.84088 4.93489 4.95922 5.21623 5.23832 5.43051 5.52885 5.85134 5.94156 6.55687 6.85153 7.10049 7.36446 7.92476 8.74799 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.052799 B = 0.007174 C = 0.006778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.187336 B = 3902.231958 C = 4129.780617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.054 4.054 3 H 0.129 0.871 4 C 0.453 3.547 5 O -0.621 6.621 6 N -0.584 5.584 7 C -0.330 4.330 8 H 0.053 0.947 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.962 3.038 12 H -0.255 1.255 13 H -0.275 1.275 14 H -0.228 1.228 15 C -0.119 4.119 16 C -0.076 4.076 17 C -0.168 4.168 18 C 0.076 3.924 19 N -0.520 5.520 20 C 0.108 3.892 21 H 0.048 0.952 22 H 0.075 0.925 23 H 0.095 0.905 24 H 0.390 0.610 25 H 0.280 0.720 26 H 0.164 0.836 27 H 0.173 0.827 28 H 0.181 0.819 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.478 9.862 -16.416 19.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 H 0.147 0.853 4 C 0.241 3.759 5 O -0.506 6.506 6 N -0.224 5.224 7 C -0.459 4.459 8 H 0.071 0.929 9 C -0.213 4.213 10 N -0.574 5.574 11 Si 0.781 3.219 12 H -0.179 1.179 13 H -0.200 1.200 14 H -0.151 1.151 15 C -0.121 4.121 16 C -0.101 4.101 17 C -0.187 4.187 18 C -0.081 4.081 19 N -0.230 5.230 20 C -0.048 4.048 21 H 0.068 0.932 22 H 0.093 0.907 23 H 0.114 0.886 24 H 0.226 0.774 25 H 0.089 0.911 26 H 0.182 0.818 27 H 0.191 0.809 28 H 0.198 0.802 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.234 8.298 -16.383 18.847 hybrid contribution -0.013 0.908 1.145 1.462 sum -4.247 9.206 -15.238 18.303 Atomic orbital electron populations 1.21843 0.90552 1.02841 1.04360 1.20188 0.98871 1.00349 0.88201 0.85329 1.20825 0.83643 0.86389 0.85020 1.90576 1.42875 1.30135 1.87016 1.41987 1.47600 1.27922 1.04901 1.19009 1.31003 1.11280 0.84652 0.92861 1.26138 0.99105 1.02349 0.93688 1.69806 1.46206 1.42462 0.98920 0.85410 0.78821 0.77639 0.79999 1.17933 1.19955 1.15114 1.20474 0.99715 0.95537 0.96389 1.21895 0.93690 1.01679 0.92871 1.22476 1.01327 0.95638 0.99237 1.23328 0.93502 0.93564 0.97659 1.67635 1.12130 1.39632 1.03568 1.22345 0.97093 0.92032 0.93378 0.93240 0.90653 0.88612 0.77358 0.91085 0.81804 0.80924 0.80207 0.85548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.91 71.98 0.64 -2.74 15 2 C -0.05 -1.65 2.92 -12.29 -0.04 -1.69 15 3 H 0.13 3.03 7.93 -2.38 -0.02 3.01 15 4 C 0.45 20.47 6.98 87.66 0.61 21.08 15 5 O -0.62 -34.88 14.70 -3.10 -0.05 -34.93 15 6 N -0.58 -27.34 4.98 -306.98 -1.53 -28.87 15 7 C -0.33 -19.37 10.16 84.04 0.85 -18.51 15 8 H 0.05 3.75 7.39 -2.91 -0.02 3.73 15 9 C -0.01 -0.78 5.50 84.93 0.47 -0.31 15 10 N -0.93 -56.33 13.96 21.67 0.30 -56.03 15 11 Si 0.96 38.13 27.74 68.60 1.90 40.03 15 12 H -0.26 -9.55 7.11 99.48 0.71 -8.84 15 13 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 14 H -0.23 -7.48 6.52 99.48 0.65 -6.83 15 15 C -0.12 -3.72 4.40 -19.78 -0.09 -3.81 15 16 C -0.08 -1.82 9.81 22.47 0.22 -1.60 15 17 C -0.17 -3.53 10.11 22.36 0.23 -3.31 15 18 C 0.08 1.94 11.18 84.69 0.95 2.89 15 19 N -0.52 -17.83 10.36 -195.85 -2.03 -19.85 15 20 C 0.11 3.90 9.12 84.67 0.77 4.67 15 21 H 0.05 1.35 7.41 -2.39 -0.02 1.34 15 22 H 0.07 1.67 7.57 -2.38 -0.02 1.65 15 23 H 0.10 1.72 8.14 -2.39 -0.02 1.70 15 24 H 0.39 15.00 5.18 -92.71 -0.48 14.52 15 25 H 0.28 15.38 8.31 -92.71 -0.77 14.61 15 26 H 0.16 2.76 8.00 -2.91 -0.02 2.74 15 27 H 0.17 2.13 8.06 -2.91 -0.02 2.11 15 28 H 0.18 3.24 8.06 -2.91 -0.02 3.22 15 29 H 0.13 5.00 7.53 -2.91 -0.02 4.98 15 Total: -1.00 -78.98 255.15 3.84 -75.14 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.62 Total: 27.82 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 4.62 Total: -3.32 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -3.26 Total: -104.75 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -0.05 Total: -34.93 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 1.90 Total: 40.03 kcal Total: -78.98 3.84 -75.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610424938.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.978 kcal (2) G-P(sol) polarization free energy of solvation -78.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds