Wall clock time and date at job start Mon Mar 30 2020 03:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 O 1.21293 * 120.00255 * 240.00292 * 4 2 1 6 6 N 1.34777 * 119.99928 * 59.72201 * 4 2 1 7 7 C 1.37101 * 120.00327 * 180.27606 * 6 4 2 8 8 H 1.08001 * 119.99426 * 0.02562 * 7 6 4 9 9 C 1.38942 * 120.00412 * 180.02562 * 7 6 4 10 10 N 1.31414 * 120.00005 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00057 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47191 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46534 * 120.00189 * 11 9 7 14 14 H 1.48498 * 109.47283 * 240.00132 * 11 9 7 15 15 C 1.50693 * 109.47168 * 119.99968 * 2 1 3 16 16 C 1.38673 * 120.41998 * 239.71799 * 15 2 1 17 17 C 1.38634 * 118.41808 * 179.78181 * 16 15 2 18 18 C 1.38228 * 119.16263 * 0.51528 * 17 16 15 19 19 N 1.31857 * 120.76093 * 359.73043 * 18 17 16 20 20 C 1.31881 * 121.72866 * 359.97438 * 19 18 17 21 21 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 22 22 H 1.08991 * 109.47212 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 24 24 H 0.97000 * 120.00317 * 0.28382 * 6 4 2 25 25 H 0.96996 * 120.00330 * 179.97438 * 10 9 7 26 26 H 1.07994 * 120.78773 * 0.02711 * 16 15 2 27 27 H 1.07999 * 120.41507 * 180.22075 * 17 16 15 28 28 H 1.07994 * 119.61541 * 179.74454 * 18 17 16 29 29 H 1.08003 * 119.61946 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7297 -1.6966 -1.1193 6 7 1.7022 -0.2532 -2.4546 7 6 2.1545 -0.9027 -3.5740 8 1 2.7751 -1.7810 -3.4749 9 6 1.8145 -0.4310 -4.8360 10 7 1.0598 0.6380 -4.9566 11 14 2.4315 -1.3157 -6.3612 12 1 3.2569 -2.4820 -5.9571 13 1 1.2733 -1.7839 -7.1642 14 1 3.2539 -0.3847 -7.1748 15 6 2.0323 -0.7104 1.2304 16 6 2.8349 -0.0465 2.1460 17 6 3.2699 -0.7386 3.2657 18 6 2.9008 -2.0610 3.4257 19 7 2.1404 -2.6619 2.5317 20 6 1.7035 -2.0332 1.4578 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.1446 0.5355 -2.5436 25 1 0.8227 0.9675 -5.8375 26 1 3.1111 0.9861 1.9924 27 1 3.8933 -0.2520 4.0012 28 1 3.2390 -2.6083 4.2931 29 1 1.0820 -2.5583 0.7476 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610424939.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:36 Heat of formation + Delta-G solvation = -13.219543 kcal Electronic energy + Delta-G solvation = -14362.181613 eV Core-core repulsion = 11863.859167 eV Total energy + Delta-G solvation = -2498.322446 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.07076 -38.18492 -34.29042 -33.71904 -31.84712 -31.24592 -29.27698 -25.29594 -24.22353 -23.20898 -21.80502 -19.00052 -17.96941 -16.80148 -16.38880 -15.45589 -15.05628 -14.43654 -13.95935 -13.87172 -13.44105 -13.23522 -12.79204 -12.70916 -12.26173 -11.71054 -11.59013 -11.18996 -11.02822 -10.94567 -10.36275 -10.23965 -9.56036 -9.53834 -9.12613 -8.63202 -8.35434 -8.00932 -6.45592 -3.86460 1.44758 1.58935 3.14057 3.25345 3.32778 3.84338 4.07269 4.19871 4.68929 4.90211 5.05880 5.09691 5.20433 5.28097 5.39122 5.57651 5.62466 5.79466 5.92613 6.12837 6.15473 6.29894 6.35908 6.48555 6.67337 7.02651 7.52287 8.01797 8.30015 8.55877 9.13583 9.49554 10.00213 10.71920 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.053190 B = 0.006691 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.292008 B = 4183.649472 C = 4408.607386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.065 4.065 3 H 0.091 0.909 4 C 0.444 3.556 5 O -0.588 6.588 6 N -0.557 5.557 7 C -0.300 4.300 8 H 0.104 0.896 9 C 0.023 3.977 10 N -0.900 5.900 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.281 1.281 15 C -0.096 4.096 16 C -0.076 4.076 17 C -0.180 4.180 18 C 0.083 3.917 19 N -0.490 5.490 20 C 0.136 3.864 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.393 0.607 25 H 0.272 0.728 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.149 0.851 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.549 2.082 11.362 11.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.087 4.087 3 H 0.109 0.891 4 C 0.229 3.771 5 O -0.473 6.473 6 N -0.193 5.193 7 C -0.430 4.430 8 H 0.122 0.878 9 C -0.178 4.178 10 N -0.541 5.541 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.207 1.207 15 C -0.098 4.098 16 C -0.102 4.102 17 C -0.200 4.200 18 C -0.073 4.073 19 N -0.198 5.198 20 C -0.021 4.021 21 H 0.087 0.913 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.227 0.773 25 H 0.081 0.919 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.166 0.834 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.378 0.632 11.374 11.398 hybrid contribution 0.300 1.111 -1.073 1.573 sum -0.078 1.743 10.301 10.448 Atomic orbital electron populations 1.21784 0.92826 1.02745 1.02260 1.20159 0.97044 0.99683 0.91844 0.89089 1.19653 0.85915 0.87417 0.84083 1.90554 1.42134 1.28353 1.86260 1.41859 1.45594 1.27601 1.04211 1.19779 1.29318 1.10787 0.83105 0.87830 1.25266 0.96812 0.96466 0.99290 1.69615 1.36600 1.22867 1.25023 0.85804 0.78521 0.79300 0.80768 1.19193 1.20690 1.20728 1.20454 0.97919 0.95832 0.95617 1.21452 0.95246 1.00141 0.93403 1.21993 1.02521 0.96421 0.99098 1.22648 0.94725 0.92316 0.97631 1.67689 1.10671 1.38528 1.02932 1.22537 0.95755 0.91009 0.92772 0.91265 0.92065 0.92381 0.77324 0.91854 0.85218 0.85322 0.83406 0.83024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.90 37.16 0.33 -1.74 15 2 C -0.06 -1.13 2.92 -92.93 -0.27 -1.40 15 3 H 0.09 1.42 7.93 -51.93 -0.41 1.00 15 4 C 0.44 10.33 6.99 -10.98 -0.08 10.25 15 5 O -0.59 -15.89 14.70 5.55 0.08 -15.81 15 6 N -0.56 -13.87 5.18 -10.96 -0.06 -13.93 15 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 15 8 H 0.10 3.02 7.16 -52.49 -0.38 2.65 15 9 C 0.02 0.62 5.50 -17.47 -0.10 0.53 15 10 N -0.90 -24.13 13.05 55.50 0.72 -23.40 15 11 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 15 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 14 H -0.28 -6.24 7.11 56.52 0.40 -5.83 15 15 C -0.10 -1.65 4.40 -104.48 -0.46 -2.11 15 16 C -0.08 -1.12 9.81 -39.27 -0.39 -1.50 15 17 C -0.18 -2.36 10.11 -39.44 -0.40 -2.76 15 18 C 0.08 1.20 11.18 -17.54 -0.20 1.00 15 19 N -0.49 -8.60 10.36 -13.25 -0.14 -8.74 15 20 C 0.14 2.50 9.13 -17.55 -0.16 2.34 15 21 H 0.07 1.04 7.55 -51.93 -0.39 0.65 15 22 H 0.06 0.94 7.41 -51.93 -0.38 0.55 15 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 24 H 0.39 9.31 7.31 -40.82 -0.30 9.01 15 25 H 0.27 6.87 8.31 -40.82 -0.34 6.54 15 26 H 0.13 1.56 8.00 -52.49 -0.42 1.14 15 27 H 0.13 1.24 8.06 -52.49 -0.42 0.82 15 28 H 0.15 1.62 8.06 -52.49 -0.42 1.19 15 29 H 0.15 2.86 7.53 -52.48 -0.40 2.46 15 LS Contribution 258.24 15.07 3.89 3.89 Total: -1.00 -31.48 258.24 -5.46 -36.93 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -3.08 Total: 9.00 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -1.86 Total: -3.84 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.53 Total: -46.07 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.08 Total: -15.81 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.48 -5.46 -36.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610424939.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.715 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds