Wall clock time and date at job start Mon Mar 30 2020 03:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 O 1.21293 * 120.00255 * 240.00292 * 4 2 1 6 6 N 1.34777 * 119.99928 * 59.72201 * 4 2 1 7 7 C 1.37101 * 120.00327 * 180.27606 * 6 4 2 8 8 H 1.08001 * 119.99426 * 0.02562 * 7 6 4 9 9 C 1.38942 * 120.00412 * 180.02562 * 7 6 4 10 10 N 1.31414 * 120.00005 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00057 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47191 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.46534 * 120.00189 * 11 9 7 14 14 H 1.48498 * 109.47283 * 240.00132 * 11 9 7 15 15 C 1.50693 * 109.47168 * 119.99968 * 2 1 3 16 16 C 1.38673 * 120.41998 * 239.71799 * 15 2 1 17 17 C 1.38634 * 118.41808 * 179.78181 * 16 15 2 18 18 C 1.38228 * 119.16263 * 0.51528 * 17 16 15 19 19 N 1.31857 * 120.76093 * 359.73043 * 18 17 16 20 20 C 1.31881 * 121.72866 * 359.97438 * 19 18 17 21 21 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 22 22 H 1.08991 * 109.47212 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 24 24 H 0.97000 * 120.00317 * 0.28382 * 6 4 2 25 25 H 0.96996 * 120.00330 * 179.97438 * 10 9 7 26 26 H 1.07994 * 120.78773 * 0.02711 * 16 15 2 27 27 H 1.07999 * 120.41507 * 180.22075 * 17 16 15 28 28 H 1.07994 * 119.61541 * 179.74454 * 18 17 16 29 29 H 1.08003 * 119.61946 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7297 -1.6966 -1.1193 6 7 1.7022 -0.2532 -2.4546 7 6 2.1545 -0.9027 -3.5740 8 1 2.7751 -1.7810 -3.4749 9 6 1.8145 -0.4310 -4.8360 10 7 1.0598 0.6380 -4.9566 11 14 2.4315 -1.3157 -6.3612 12 1 3.2569 -2.4820 -5.9571 13 1 1.2733 -1.7839 -7.1642 14 1 3.2539 -0.3847 -7.1748 15 6 2.0323 -0.7104 1.2304 16 6 2.8349 -0.0465 2.1460 17 6 3.2699 -0.7386 3.2657 18 6 2.9008 -2.0610 3.4257 19 7 2.1404 -2.6619 2.5317 20 6 1.7035 -2.0332 1.4578 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 1.1446 0.5355 -2.5436 25 1 0.8227 0.9675 -5.8375 26 1 3.1111 0.9861 1.9924 27 1 3.8933 -0.2520 4.0012 28 1 3.2390 -2.6083 4.2931 29 1 1.0820 -2.5583 0.7476 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610424939.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:36 Heat of formation + Delta-G solvation = -34.959111 kcal Electronic energy + Delta-G solvation = -14363.124311 eV Core-core repulsion = 11863.859167 eV Total energy + Delta-G solvation = -2499.265144 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.38458 -39.91050 -36.10584 -35.34239 -33.30458 -32.92098 -30.55698 -27.18183 -25.62491 -24.40434 -23.24722 -20.72474 -19.93036 -17.98588 -17.91674 -16.97159 -16.72144 -16.11608 -15.53728 -15.46113 -14.86703 -14.56843 -14.36191 -13.90491 -13.55141 -13.51456 -13.12950 -12.93421 -12.48102 -12.37255 -12.19432 -12.09125 -11.52976 -10.73475 -10.33617 -10.25872 -10.02792 -9.81468 -8.48521 -5.97193 0.25863 0.42828 1.34919 1.40918 1.54736 2.02039 2.28667 2.87139 3.17547 3.30646 3.52893 3.78828 3.96992 4.13960 4.16470 4.32628 4.39408 4.48735 4.71976 4.85267 4.94010 4.97918 5.21205 5.24439 5.40315 5.44960 5.85569 5.99345 6.56935 7.09388 7.11330 7.53629 8.08877 8.68802 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.053190 B = 0.006691 C = 0.006350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.292008 B = 4183.649472 C = 4408.607386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.053 4.053 3 H 0.117 0.883 4 C 0.442 3.558 5 O -0.630 6.630 6 N -0.566 5.566 7 C -0.335 4.335 8 H 0.076 0.924 9 C -0.010 4.010 10 N -0.917 5.917 11 Si 0.991 3.009 12 H -0.276 1.276 13 H -0.270 1.270 14 H -0.270 1.270 15 C -0.116 4.116 16 C -0.078 4.078 17 C -0.167 4.167 18 C 0.076 3.924 19 N -0.518 5.518 20 C 0.109 3.891 21 H 0.066 0.934 22 H 0.048 0.952 23 H 0.091 0.909 24 H 0.398 0.602 25 H 0.278 0.722 26 H 0.160 0.840 27 H 0.174 0.826 28 H 0.183 0.817 29 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.016 3.440 12.580 13.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.075 4.075 3 H 0.135 0.865 4 C 0.230 3.770 5 O -0.518 6.518 6 N -0.202 5.202 7 C -0.464 4.464 8 H 0.094 0.906 9 C -0.210 4.210 10 N -0.558 5.558 11 Si 0.815 3.185 12 H -0.201 1.201 13 H -0.195 1.195 14 H -0.195 1.195 15 C -0.119 4.119 16 C -0.104 4.104 17 C -0.186 4.186 18 C -0.080 4.080 19 N -0.228 5.228 20 C -0.047 4.047 21 H 0.085 0.915 22 H 0.067 0.933 23 H 0.110 0.890 24 H 0.232 0.768 25 H 0.088 0.912 26 H 0.178 0.822 27 H 0.191 0.809 28 H 0.200 0.800 29 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.129 2.015 12.592 12.753 hybrid contribution 0.180 0.672 -1.322 1.494 sum 0.309 2.687 11.270 11.590 Atomic orbital electron populations 1.21758 0.91052 1.02460 1.03736 1.20102 0.98464 1.00005 0.88912 0.86463 1.20722 0.84343 0.86716 0.85221 1.90520 1.43781 1.30319 1.87134 1.41899 1.46088 1.27826 1.04367 1.19690 1.30704 1.11133 0.84898 0.90557 1.25998 0.96574 0.97032 1.01377 1.69664 1.36673 1.23354 1.26070 0.84905 0.78240 0.78056 0.77344 1.20051 1.19527 1.19467 1.20477 0.99499 0.95632 0.96270 1.21877 0.93898 1.01578 0.93048 1.22469 1.01371 0.95704 0.99031 1.23336 0.93523 0.93476 0.97694 1.67637 1.12052 1.39569 1.03497 1.22312 0.97084 0.91873 0.93398 0.91486 0.93323 0.89046 0.76765 0.91204 0.82208 0.80905 0.80027 0.85529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 8.90 71.98 0.64 -3.23 15 2 C -0.05 -1.81 2.92 -12.29 -0.04 -1.85 15 3 H 0.12 3.39 7.93 -2.38 -0.02 3.37 15 4 C 0.44 21.09 6.99 87.66 0.61 21.70 15 5 O -0.63 -35.45 14.70 -3.07 -0.05 -35.49 15 6 N -0.57 -28.87 5.18 -306.98 -1.59 -30.46 15 7 C -0.33 -19.05 9.68 84.04 0.81 -18.23 15 8 H 0.08 4.68 7.16 -2.91 -0.02 4.66 15 9 C -0.01 -0.52 5.50 84.92 0.47 -0.05 15 10 N -0.92 -48.95 13.05 21.66 0.28 -48.66 15 11 Si 0.99 42.99 29.55 68.60 2.03 45.02 15 12 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 13 H -0.27 -11.20 7.11 99.48 0.71 -10.50 15 14 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 15 C -0.12 -3.90 4.40 -19.77 -0.09 -3.99 15 16 C -0.08 -2.04 9.81 22.47 0.22 -1.82 15 17 C -0.17 -3.71 10.11 22.36 0.23 -3.48 15 18 C 0.08 2.00 11.18 84.69 0.95 2.95 15 19 N -0.52 -18.08 10.36 -195.84 -2.03 -20.11 15 20 C 0.11 4.10 9.13 84.67 0.77 4.87 15 21 H 0.07 1.97 7.55 -2.39 -0.02 1.95 15 22 H 0.05 1.52 7.41 -2.39 -0.02 1.51 15 23 H 0.09 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.40 19.13 7.31 -92.71 -0.68 18.45 15 25 H 0.28 13.86 8.31 -92.71 -0.77 13.09 15 26 H 0.16 3.14 8.00 -2.91 -0.02 3.11 15 27 H 0.17 2.31 8.06 -2.91 -0.02 2.29 15 28 H 0.18 3.33 8.06 -2.91 -0.02 3.31 15 29 H 0.13 5.16 7.53 -2.91 -0.02 5.14 15 Total: -1.00 -70.09 258.24 3.71 -66.37 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.49 Total: 26.47 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 4.58 Total: -3.13 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -3.34 Total: -99.24 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -0.05 Total: -35.49 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -70.09 3.71 -66.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610424939.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.416 kcal (2) G-P(sol) polarization free energy of solvation -70.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds