Wall clock time and date at job start Mon Mar 30 2020 02:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99529 * 2 1 4 4 H 1.48502 * 109.47159 * 240.00479 * 3 2 1 5 5 H 1.48496 * 109.47364 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46867 * 120.00732 * 3 2 1 7 7 C 1.38803 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00231 * 164.27382 * 7 2 1 9 9 N 1.36942 * 120.00293 * 344.26586 * 7 2 1 10 10 C 1.47235 * 121.30031 * 155.41213 * 9 7 2 11 11 C 1.52872 * 107.96220 * 115.81980 * 10 9 7 12 12 C 1.50323 * 110.71479 * 47.09261 * 11 10 9 13 13 C 1.39324 * 118.50071 * 160.64054 * 12 11 10 14 14 C 1.37885 * 119.50723 * 179.58047 * 13 12 11 15 15 N 1.31964 * 120.72079 * 359.94504 * 14 13 12 16 16 C 1.31922 * 121.48349 * 0.15697 * 15 14 13 17 17 O 1.35678 * 119.53207 * 179.97438 * 16 15 14 18 18 C 1.37537 * 123.18192 * 340.48014 * 12 11 10 19 19 C 1.46766 * 121.29440 * 335.43927 * 9 7 2 20 20 H 0.96998 * 120.00201 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.75936 * 356.21104 * 10 9 7 22 22 H 1.08998 * 109.80129 * 235.46733 * 10 9 7 23 23 H 1.09010 * 109.21825 * 167.38590 * 11 10 9 24 24 H 1.08991 * 109.22457 * 286.77980 * 11 10 9 25 25 H 1.07997 * 120.24458 * 359.56049 * 13 12 11 26 26 H 1.08000 * 119.63753 * 179.97438 * 14 13 12 27 27 H 0.96696 * 114.00209 * 270.09993 * 17 16 15 28 28 H 1.09001 * 109.46108 * 344.34149 * 19 9 7 29 29 H 1.08997 * 109.46344 * 104.29952 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0600 -1.2194 -0.2540 9 7 1.3642 -2.3660 0.3205 10 6 1.8525 -3.6694 -0.1594 11 6 2.2738 -4.4924 1.0581 12 6 1.2189 -4.4380 2.1275 13 6 1.2206 -5.4222 3.1137 14 6 0.2676 -5.3874 4.1096 15 7 -0.6430 -4.4327 4.1382 16 6 -0.6771 -3.4854 3.2207 17 8 -1.6312 -2.5231 3.2881 18 6 0.2523 -3.4611 2.1825 19 6 0.1575 -2.3626 1.1560 20 1 -0.4850 0.8400 0.0004 21 1 2.7079 -3.5224 -0.8187 22 1 1.0576 -4.1865 -0.6968 23 1 2.4252 -5.5287 0.7558 24 1 3.2077 -4.0943 1.4546 25 1 1.9626 -6.2068 3.0979 26 1 0.2667 -6.1495 4.8748 27 1 -2.4454 -2.7427 2.8149 28 1 0.0680 -1.4007 1.6608 29 1 -0.7189 -2.5263 0.5289 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617262405.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:41 Heat of formation + Delta-G solvation = 16.491923 kcal Electronic energy + Delta-G solvation = -14936.876232 eV Core-core repulsion = 12439.842172 eV Total energy + Delta-G solvation = -2497.034060 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.22526 -36.89840 -36.21420 -33.08538 -30.93071 -30.69345 -28.75144 -25.73049 -23.58688 -22.61851 -21.98163 -19.50046 -17.90406 -16.90332 -16.00388 -15.62282 -15.17295 -14.45734 -13.92517 -13.69418 -13.40530 -12.97119 -12.59730 -12.23697 -11.98855 -11.44989 -11.21351 -11.03278 -10.80391 -10.53329 -10.44656 -10.19783 -9.93655 -8.92380 -8.86836 -8.66350 -8.04950 -6.84023 -5.85805 -3.26623 1.46554 1.73959 3.37042 3.43427 3.44338 3.96833 4.27594 4.44521 5.09720 5.15057 5.23892 5.37063 5.54131 5.61274 5.81546 5.88676 5.98061 6.17951 6.32380 6.39279 6.66442 6.71859 6.80885 7.00513 7.16431 7.52839 7.73076 8.00196 8.31365 8.36907 9.11580 9.74182 10.31027 11.24698 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.034881 B = 0.010116 C = 0.008550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.537521 B = 2767.336856 C = 3273.879434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.004 3.996 3 Si 0.907 3.093 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.070 0.930 9 N -0.593 5.593 10 C 0.141 3.859 11 C -0.102 4.102 12 C -0.017 4.017 13 C -0.190 4.190 14 C 0.093 3.907 15 N -0.513 5.513 16 C 0.303 3.697 17 O -0.476 6.476 18 C -0.139 4.139 19 C 0.214 3.786 20 H 0.257 0.743 21 H 0.064 0.936 22 H 0.027 0.973 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.128 0.872 26 H 0.150 0.850 27 H 0.394 0.606 28 H 0.106 0.894 29 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.698 -9.552 3.243 10.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.736 3.264 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.385 4.385 8 H 0.088 0.912 9 N -0.315 5.315 10 C 0.014 3.986 11 C -0.141 4.141 12 C -0.025 4.025 13 C -0.210 4.210 14 C -0.062 4.062 15 N -0.233 5.233 16 C 0.122 3.878 17 O -0.282 6.282 18 C -0.144 4.144 19 C 0.088 3.912 20 H 0.067 0.933 21 H 0.083 0.917 22 H 0.045 0.955 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.146 0.854 26 H 0.167 0.833 27 H 0.251 0.749 28 H 0.123 0.877 29 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.362 -9.010 4.186 9.942 hybrid contribution 0.620 0.572 -0.734 1.118 sum 0.982 -8.438 3.452 9.169 Atomic orbital electron populations 1.69971 1.05225 1.25960 1.53715 1.25026 0.95423 0.98467 1.00586 0.86301 0.78872 0.83071 0.78117 1.20812 1.21478 1.20978 1.19114 0.92373 0.84234 1.42780 0.91208 1.44028 1.30241 1.01452 1.55815 1.20930 0.97753 0.87271 0.92639 1.21025 0.96524 1.00366 0.96158 1.19763 0.94912 0.92338 0.95458 1.22112 1.01164 1.00817 0.96946 1.22148 0.91096 0.95419 0.97491 1.66977 1.26190 1.03171 1.26930 1.19111 0.91218 0.87537 0.89904 1.84781 1.27416 1.38671 1.77312 1.21937 0.95559 0.99246 0.97681 1.19602 0.88999 0.94301 0.88300 0.93307 0.91711 0.95467 0.91427 0.90413 0.85360 0.83278 0.74887 0.87656 0.94075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.90 11.09 55.49 0.62 -25.29 15 2 C 0.00 0.10 4.99 -17.43 -0.09 0.02 15 3 Si 0.91 21.67 29.58 -169.99 -5.03 16.65 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 15 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 7 C -0.26 -6.96 9.69 -15.06 -0.15 -7.10 15 8 H 0.07 1.84 7.88 -52.49 -0.41 1.42 15 9 N -0.59 -14.79 2.97 -173.92 -0.52 -15.31 15 10 C 0.14 2.84 6.52 -3.71 -0.02 2.82 15 11 C -0.10 -1.74 5.91 -28.13 -0.17 -1.90 15 12 C -0.02 -0.31 5.76 -104.66 -0.60 -0.92 15 13 C -0.19 -2.94 9.72 -39.31 -0.38 -3.32 15 14 C 0.09 1.46 11.17 -17.62 -0.20 1.27 15 15 N -0.51 -9.60 10.38 -13.32 -0.14 -9.74 15 16 C 0.30 6.05 7.70 -17.09 -0.13 5.92 15 17 O -0.48 -9.00 12.80 -18.74 -0.24 -9.24 15 18 C -0.14 -2.92 5.83 -104.48 -0.61 -3.53 15 19 C 0.21 5.18 4.39 -5.08 -0.02 5.16 15 20 H 0.26 7.14 8.31 -40.82 -0.34 6.81 15 21 H 0.06 1.24 7.96 -51.93 -0.41 0.83 15 22 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 23 H 0.07 0.93 8.12 -51.92 -0.42 0.51 15 24 H 0.08 1.34 8.14 -51.93 -0.42 0.91 15 25 H 0.13 1.54 8.06 -52.49 -0.42 1.12 15 26 H 0.15 1.77 8.06 -52.49 -0.42 1.35 15 27 H 0.39 5.46 9.06 45.56 0.41 5.87 15 28 H 0.11 2.90 6.23 -51.93 -0.32 2.58 15 29 H 0.04 1.04 8.14 -51.93 -0.42 0.62 15 LS Contribution 247.95 15.07 3.74 3.74 Total: -1.00 -31.43 247.95 -6.35 -37.78 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -2.41 Total: 3.01 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -2.37 Total: -1.59 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.04 Total: -50.34 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.24 Total: -9.24 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.43 -6.35 -37.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617262405.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.269 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds