Wall clock time and date at job start Mon Mar 30 2020 02:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47474 * 2 1 4 4 C 1.50700 * 109.47171 * 240.00148 * 2 1 3 5 5 O 1.20753 * 120.00363 * 119.99538 * 4 2 1 6 6 O 1.42898 * 109.47187 * 120.00457 * 2 1 3 7 7 C 1.35677 * 116.99760 * 276.39380 * 6 2 1 8 8 C 1.39320 * 119.82035 * 185.49422 * 7 6 2 9 9 C 1.36430 * 120.18731 * 180.25805 * 8 7 6 10 10 C 1.40834 * 119.81147 * 359.49496 * 9 8 7 11 11 C 1.41213 * 120.18147 * 180.27631 * 10 9 8 12 12 H 1.07998 * 120.00075 * 333.45587 * 11 10 9 13 13 C 1.39891 * 120.00293 * 153.45320 * 11 10 9 14 14 N 1.30883 * 119.99809 * 346.84306 * 13 11 10 15 15 Si 1.86795 * 119.99998 * 166.84253 * 13 11 10 16 16 H 1.48493 * 109.47315 * 60.00132 * 15 13 11 17 17 H 1.48504 * 109.46988 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47262 * 300.00036 * 15 13 11 19 19 C 1.40837 * 119.63995 * 0.25140 * 10 9 8 20 20 C 1.36433 * 119.81579 * 0.02562 * 19 10 9 21 21 H 1.08991 * 109.47329 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.46924 * 300.00108 * 1 2 3 23 23 H 1.08991 * 109.46907 * 59.99567 * 1 2 3 24 24 H 1.08006 * 119.99910 * 300.00737 * 4 2 1 25 25 H 1.07999 * 119.90153 * 0.02562 * 8 7 6 26 26 H 1.07997 * 120.09335 * 179.76591 * 9 8 7 27 27 H 0.96999 * 120.00029 * 179.97438 * 14 13 11 28 28 H 1.08002 * 120.08970 * 180.02562 * 19 10 9 29 29 H 1.07998 * 119.91200 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7265 -0.1235 -2.0254 6 8 2.0063 -0.6737 1.1667 7 6 2.0847 0.0539 2.3092 8 6 2.6479 -0.5096 3.4521 9 6 2.7257 0.2134 4.6065 10 6 2.2444 1.5366 4.6376 11 6 2.3264 2.2940 5.8266 12 1 2.3400 1.7955 6.7846 13 6 2.3901 3.6901 5.7637 14 7 2.6324 4.2833 4.6225 15 14 2.1292 4.7075 7.3084 16 1 3.1565 4.3467 8.3181 17 1 2.2460 6.1502 6.9764 18 1 0.7772 4.4345 7.8585 19 6 1.6814 2.1005 3.4764 20 6 1.6059 1.3620 2.3317 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.7713 -1.7444 -1.4015 25 1 3.0205 -1.5230 3.4252 26 1 3.1591 -0.2262 5.4926 27 1 2.6762 5.2513 4.5787 28 1 1.3105 3.1147 3.4920 29 1 1.1749 1.7930 1.4402 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698623734.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:09 Heat of formation + Delta-G solvation = -54.586114 kcal Electronic energy + Delta-G solvation = -14215.108361 eV Core-core repulsion = 11682.699375 eV Total energy + Delta-G solvation = -2532.408986 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.089 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.66385 -38.44516 -36.47915 -33.44911 -31.63773 -29.66448 -28.97971 -25.48163 -24.40312 -21.94517 -20.96506 -20.01844 -17.53873 -17.27309 -16.18216 -15.57845 -15.07145 -14.56218 -14.10136 -13.95337 -13.59885 -12.92098 -12.67798 -12.42405 -12.11067 -11.80520 -11.57081 -11.26787 -11.09991 -11.04784 -10.65316 -10.06456 -9.85233 -9.60651 -9.37853 -9.06437 -7.69518 -7.03961 -6.72708 -4.30856 1.81014 2.73842 2.92852 3.06407 3.09082 3.18546 3.90739 3.93882 4.45599 4.60092 5.03490 5.16405 5.51678 5.62631 5.71066 5.88475 6.05558 6.21520 6.27207 6.62847 6.85122 7.03411 7.23223 7.25274 7.37777 7.51760 7.86273 7.96350 8.10291 8.35928 8.59893 8.87282 8.94007 10.21673 Molecular weight = 220.09amu Principal moments of inertia in cm(-1) A = 0.051024 B = 0.006462 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.631324 B = 4332.131191 C = 4570.924227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.022 3.978 3 H 0.088 0.912 4 C 0.366 3.634 5 O -0.453 6.453 6 O -0.314 6.314 7 C -0.012 4.012 8 C -0.111 4.111 9 C -0.195 4.195 10 C 0.088 3.912 11 C -0.462 4.462 12 H 0.077 0.923 13 C 0.073 3.927 14 N -0.804 5.804 15 Si 0.911 3.089 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.265 1.265 19 C -0.131 4.131 20 C -0.173 4.173 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.280 0.720 28 H 0.125 0.875 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.107 -4.635 -4.924 7.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.037 4.037 3 H 0.105 0.895 4 C 0.220 3.780 5 O -0.322 6.322 6 O -0.230 6.230 7 C -0.055 4.055 8 C -0.130 4.130 9 C -0.215 4.215 10 C 0.086 3.914 11 C -0.492 4.492 12 H 0.095 0.905 13 C -0.143 4.143 14 N -0.431 5.431 15 Si 0.735 3.265 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.189 1.189 19 C -0.151 4.151 20 C -0.192 4.192 21 H 0.088 0.912 22 H 0.098 0.902 23 H 0.083 0.917 24 H 0.119 0.881 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.091 0.909 28 H 0.142 0.858 29 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.629 -4.255 -5.478 7.828 hybrid contribution -0.212 0.795 0.717 1.091 sum -3.841 -3.460 -4.761 7.028 Atomic orbital electron populations 1.22257 0.94011 1.03399 1.03437 1.23029 0.95783 0.98635 0.86221 0.89454 1.25924 0.74627 0.93229 0.84209 1.90400 1.27177 1.69408 1.45260 1.85818 1.83190 1.38283 1.15713 1.18551 1.09331 0.92011 0.85581 1.19611 1.02853 0.98913 0.91593 1.20623 1.07595 0.96835 0.96460 1.17621 0.89310 0.91091 0.93381 1.19462 1.45013 0.90889 0.93874 0.90532 1.25880 0.92348 0.98625 0.97491 1.69800 1.35392 1.11419 1.26471 0.86329 0.79991 0.78273 0.81867 1.19059 1.20409 1.18929 1.21032 1.01370 1.00175 0.92494 1.20668 1.05707 0.93863 0.98963 0.91215 0.90237 0.91683 0.88078 0.88425 0.88113 0.90919 0.85755 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.11 37.16 0.34 -1.90 15 2 C 0.02 0.34 2.73 -27.88 -0.08 0.26 15 3 H 0.09 1.52 6.35 -51.93 -0.33 1.19 15 4 C 0.37 4.94 10.82 36.01 0.39 5.32 15 5 O -0.45 -7.58 17.90 6.00 0.11 -7.47 15 6 O -0.31 -6.04 9.78 -18.73 -0.18 -6.23 15 7 C -0.01 -0.27 6.61 -38.78 -0.26 -0.52 15 8 C -0.11 -2.52 9.92 -39.83 -0.40 -2.91 15 9 C -0.20 -4.73 9.74 -39.25 -0.38 -5.12 15 10 C 0.09 2.32 5.57 -106.80 -0.59 1.73 15 11 C -0.46 -12.14 9.05 -37.83 -0.34 -12.48 15 12 H 0.08 1.92 7.88 -52.49 -0.41 1.51 15 13 C 0.07 1.82 5.22 -17.34 -0.09 1.72 15 14 N -0.80 -20.76 10.81 55.54 0.60 -20.15 15 15 Si 0.91 18.60 29.58 -169.99 -5.03 13.58 15 16 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 17 H -0.28 -5.57 7.11 56.52 0.40 -5.17 15 18 H -0.26 -5.34 7.11 56.52 0.40 -4.94 15 19 C -0.13 -3.36 8.62 -39.25 -0.34 -3.70 15 20 C -0.17 -3.97 8.10 -39.83 -0.32 -4.29 15 21 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.08 1.16 6.75 -51.92 -0.35 0.81 15 23 H 0.06 0.70 8.14 -51.93 -0.42 0.27 15 24 H 0.10 0.97 8.06 -52.48 -0.42 0.55 15 25 H 0.10 1.98 8.06 -52.49 -0.42 1.55 15 26 H 0.10 2.26 8.06 -52.49 -0.42 1.84 15 27 H 0.28 6.62 8.30 -40.82 -0.34 6.28 15 28 H 0.12 3.28 6.13 -52.49 -0.32 2.96 15 29 H 0.10 2.00 5.34 -52.49 -0.28 1.72 15 LS Contribution 256.10 15.07 3.86 3.86 Total: -1.00 -28.69 256.10 -5.66 -34.35 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -2.94 Total: 3.95 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -2.07 Total: -21.88 kcal Atomic # 7 Polarization: -20.76 SS G_CDS: 0.60 Total: -20.15 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.08 Total: -13.70 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.69 -5.66 -34.35 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698623734.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.240 kcal (2) G-P(sol) polarization free energy of solvation -28.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds