Wall clock time and date at job start Mon Mar 30 2020 03:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32092 * 120.07790 * 2 1 4 4 C 1.32109 * 120.08824 * 179.97438 * 3 2 1 5 5 C 1.38879 * 120.22737 * 359.97438 * 4 3 2 6 6 N 1.31690 * 120.15093 * 359.74574 * 5 4 3 7 7 C 1.33216 * 119.90822 * 0.50697 * 6 5 4 8 8 C 1.47533 * 120.11196 * 179.76757 * 7 6 5 9 9 O 1.21211 * 119.99780 * 173.18376 * 8 7 6 10 10 C 1.50702 * 119.99985 * 353.18578 * 8 7 6 11 11 H 1.09002 * 109.46920 * 330.00174 * 10 8 7 12 12 C 1.52995 * 109.47171 * 89.99756 * 10 8 7 13 13 C 1.50697 * 109.46778 * 209.99867 * 10 8 7 14 14 H 1.07991 * 120.00259 * 359.97438 * 13 10 8 15 15 C 1.37880 * 119.99804 * 179.72434 * 13 10 8 16 16 N 1.31514 * 120.00040 * 0.27448 * 15 13 10 17 17 Si 1.86795 * 120.00058 * 180.27284 * 15 13 10 18 18 H 1.48494 * 109.47114 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.46856 * 120.00019 * 17 15 13 20 20 H 1.48500 * 109.47434 * 239.99657 * 17 15 13 21 21 H 1.08999 * 109.47289 * 263.52690 * 1 2 3 22 22 H 1.09006 * 109.46795 * 23.52124 * 1 2 3 23 23 H 1.08992 * 109.47689 * 143.52523 * 1 2 3 24 24 H 1.08001 * 119.88621 * 179.97438 * 4 3 2 25 25 H 1.08003 * 119.92143 * 180.02562 * 5 4 3 26 26 H 1.08998 * 109.47273 * 180.02562 * 12 10 8 27 27 H 1.09001 * 109.47245 * 300.00094 * 12 10 8 28 28 H 1.08997 * 109.47398 * 59.99929 * 12 10 8 29 29 H 0.96998 * 120.00497 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1690 1.1431 0.0000 4 6 3.4901 1.1433 0.0005 5 6 4.1895 -0.0565 0.0016 6 7 3.5388 -1.2014 0.0072 7 6 2.2066 -1.2084 0.0016 8 6 1.4731 -2.4885 0.0026 9 8 0.2670 -2.4956 0.1221 10 6 2.2235 -3.7870 -0.1449 11 1 3.1205 -3.6225 -0.7420 12 6 2.6200 -4.3069 1.2383 13 6 1.3433 -4.8008 -0.8294 14 1 0.3407 -4.5319 -1.1273 15 6 1.8198 -6.0702 -1.0798 16 7 3.0406 -6.3978 -0.7166 17 14 0.7314 -7.3245 -1.9350 18 1 -0.5864 -6.7111 -2.2386 19 1 1.3773 -7.7599 -3.1994 20 1 0.5385 -8.4994 -1.0476 21 1 -0.3634 -0.1159 1.0211 22 1 -0.3633 0.9423 -0.4102 23 1 -0.3634 -0.8263 -0.6108 24 1 4.0281 2.0798 0.0001 25 1 5.2695 -0.0506 0.0024 26 1 3.1631 -5.2459 1.1316 27 1 3.2566 -3.5736 1.7334 28 1 1.7231 -4.4714 1.8354 29 1 3.3760 -7.2907 -0.8930 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699776651.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:56 Heat of formation + Delta-G solvation = 8.351386 kcal Electronic energy + Delta-G solvation = -14584.987433 eV Core-core repulsion = 12087.600372 eV Total energy + Delta-G solvation = -2497.387060 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.02388 -38.37487 -34.58105 -33.65677 -32.45472 -30.51367 -27.96542 -25.50711 -25.16402 -22.90514 -22.28633 -19.29013 -17.54385 -16.55193 -16.09701 -15.74107 -15.12852 -14.78703 -14.02364 -13.50203 -13.22057 -12.67013 -12.64492 -12.43218 -12.25721 -11.53724 -11.34669 -11.02718 -10.87757 -10.69296 -10.58402 -10.22170 -10.07648 -9.32290 -9.03428 -8.93995 -8.46775 -8.21112 -6.02140 -4.08157 0.57592 1.22278 2.93829 3.31140 3.38789 3.45201 3.98746 4.06416 4.27050 4.43964 4.52747 4.80782 5.17991 5.26703 5.30667 5.46702 5.83941 5.95519 6.20711 6.32441 6.63605 6.79137 6.97932 7.07640 7.33878 7.55796 7.77145 7.88021 8.01922 8.21982 8.49420 8.95978 9.56209 11.04453 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.042637 B = 0.008168 C = 0.007354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.553741 B = 3427.167131 C = 3806.459319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.119 3.881 3 N -0.453 5.453 4 C 0.066 3.934 5 C 0.032 3.968 6 N -0.382 5.382 7 C 0.010 3.990 8 C 0.416 3.584 9 O -0.444 6.444 10 C 0.017 3.983 11 H 0.061 0.939 12 C -0.122 4.122 13 C -0.510 4.510 14 H 0.066 0.934 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.283 1.283 21 H 0.085 0.915 22 H 0.069 0.931 23 H 0.105 0.895 24 H 0.170 0.830 25 H 0.172 0.828 26 H 0.094 0.906 27 H 0.015 0.985 28 H 0.028 0.972 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.656 11.788 1.635 12.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.020 4.020 3 N -0.168 5.168 4 C -0.096 4.096 5 C -0.131 4.131 6 N -0.099 5.099 7 C -0.129 4.129 8 C 0.292 3.708 9 O -0.317 6.317 10 C -0.002 4.002 11 H 0.079 0.921 12 C -0.180 4.180 13 C -0.548 4.548 14 H 0.084 0.916 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.725 3.275 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.209 1.209 21 H 0.103 0.897 22 H 0.087 0.913 23 H 0.123 0.877 24 H 0.187 0.813 25 H 0.189 0.811 26 H 0.113 0.887 27 H 0.034 0.966 28 H 0.048 0.952 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.069 11.588 1.701 11.761 hybrid contribution -0.095 -0.487 -0.447 0.668 sum 0.973 11.101 1.254 11.213 Atomic orbital electron populations 1.21030 0.86873 1.03991 1.04344 1.22636 0.98887 0.88460 0.91971 1.68353 1.08876 1.29128 1.10491 1.24012 0.90936 0.99934 0.94711 1.23902 1.02102 0.88681 0.98388 1.68581 1.07882 1.29115 1.04317 1.23365 0.91351 0.97567 1.00598 1.23379 0.88492 0.89236 0.69702 1.90332 1.16451 1.88822 1.36047 1.19054 0.96857 0.87931 0.96322 0.92108 1.21597 0.99220 1.02299 0.94908 1.21121 1.00001 0.95987 1.37699 0.91562 1.24927 0.95121 0.98228 0.95650 1.69893 1.15673 1.20258 1.46999 0.86446 0.80784 0.81135 0.79162 1.19619 1.21018 1.20941 0.89699 0.91260 0.87666 0.81332 0.81059 0.88735 0.96622 0.95235 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 8.88 36.00 0.32 -1.31 15 2 C 0.12 2.07 6.83 -81.96 -0.56 1.51 15 3 N -0.45 -7.01 10.42 -8.87 -0.09 -7.10 15 4 C 0.07 0.82 11.23 -17.20 -0.19 0.63 15 5 C 0.03 0.44 11.22 -17.38 -0.20 0.24 15 6 N -0.38 -7.02 9.70 -9.69 -0.09 -7.11 15 7 C 0.01 0.20 6.72 -82.96 -0.56 -0.36 15 8 C 0.42 9.47 6.12 -30.52 -0.19 9.29 15 9 O -0.44 -10.36 12.95 5.62 0.07 -10.29 15 10 C 0.02 0.44 2.31 -92.93 -0.21 0.23 15 11 H 0.06 1.64 7.73 -51.93 -0.40 1.24 15 12 C -0.12 -3.00 8.95 37.16 0.33 -2.66 15 13 C -0.51 -14.29 8.32 -34.44 -0.29 -14.58 15 14 H 0.07 1.89 7.14 -52.49 -0.37 1.52 15 15 C 0.06 1.72 5.31 -17.82 -0.09 1.63 15 16 N -0.89 -25.18 11.33 55.43 0.63 -24.55 15 17 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 15 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 15 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 21 H 0.08 1.26 8.14 -51.93 -0.42 0.83 15 22 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.11 1.81 5.86 -51.93 -0.30 1.50 15 24 H 0.17 1.33 8.06 -52.49 -0.42 0.91 15 25 H 0.17 1.62 8.06 -52.48 -0.42 1.20 15 26 H 0.09 2.50 6.08 -51.93 -0.32 2.18 15 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 15 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 15 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 15 LS Contribution 254.94 15.07 3.84 3.84 Total: -1.00 -30.75 254.94 -5.37 -36.12 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -3.07 Total: -2.01 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.63 Total: -5.39 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.44 Total: -38.76 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.07 Total: -10.29 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.75 -5.37 -36.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699776651.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.470 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds