Wall clock time and date at job start Mon Mar 30 2020 02:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00104 * 2 1 4 4 H 1.48502 * 109.47003 * 270.00371 * 3 2 1 5 5 H 1.48500 * 109.46722 * 29.99923 * 3 2 1 6 6 H 1.48493 * 109.47194 * 149.99763 * 3 2 1 7 7 C 1.37884 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99933 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99828 * 0.02562 * 7 2 1 10 10 H 1.08991 * 110.27586 * 57.90566 * 9 7 2 11 11 C 1.54951 * 110.30724 * 180.02562 * 9 7 2 12 12 C 1.55303 * 100.94085 * 155.35794 * 11 9 7 13 13 C 1.54384 * 102.25228 * 325.86133 * 12 11 9 14 14 H 1.09002 * 109.83086 * 261.75256 * 13 12 11 15 15 C 1.50706 * 109.82643 * 140.87208 * 13 12 11 16 16 C 1.38391 * 119.99770 * 125.00283 * 15 13 12 17 17 N 1.32124 * 119.99527 * 179.97438 * 16 15 13 18 18 C 1.32155 * 120.00223 * 359.97438 * 17 16 15 19 19 C 1.38338 * 119.99905 * 0.02562 * 18 17 16 20 20 N 1.32119 * 120.00149 * 304.72109 * 15 13 12 21 21 O 1.43240 * 107.58840 * 21.36047 * 13 12 11 22 22 H 0.96993 * 120.00357 * 0.02562 * 1 2 3 23 23 H 1.09001 * 111.12671 * 37.43571 * 11 9 7 24 24 H 1.09001 * 111.15739 * 273.29222 * 11 9 7 25 25 H 1.09004 * 110.84717 * 207.67377 * 12 11 9 26 26 H 1.08994 * 110.85113 * 84.05631 * 12 11 9 27 27 H 1.08000 * 120.00243 * 359.95159 * 16 15 13 28 28 H 1.08001 * 120.00184 * 180.02562 * 18 17 16 29 29 H 1.08001 * 119.99898 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.5921 -2.5549 -0.8658 11 6 2.2407 -3.6915 0.0018 12 6 1.3620 -4.8032 0.6374 13 6 0.4988 -4.0060 1.6389 14 1 0.9264 -4.0829 2.6386 15 6 -0.9088 -4.5445 1.6422 16 6 -1.4890 -4.9568 2.8291 17 7 -2.7232 -5.4284 2.8320 18 6 -3.4038 -5.5059 1.7018 19 6 -2.8237 -5.0937 0.5155 20 7 -1.5908 -4.6177 0.5131 21 8 0.4948 -2.6381 1.2139 22 1 -0.4850 0.8400 -0.0004 23 1 3.1123 -3.4779 0.6205 24 1 2.5376 -3.9574 -1.0127 25 1 1.9795 -5.5369 1.1557 26 1 0.7380 -5.2830 -0.1165 27 1 -0.9329 -4.8934 3.7527 28 1 -4.4128 -5.8910 1.7043 29 1 -3.3797 -5.1574 -0.4082 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699833107.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:02 Heat of formation + Delta-G solvation = -22.690876 kcal Electronic energy + Delta-G solvation = -14646.863647 eV Core-core repulsion = 12148.130493 eV Total energy + Delta-G solvation = -2498.733154 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.03676 -39.73288 -35.28953 -34.70362 -33.13641 -32.58381 -29.97619 -27.06227 -25.52568 -24.62201 -22.15513 -22.01307 -18.77560 -18.45185 -17.91024 -17.36911 -16.70783 -16.57273 -15.70048 -15.61337 -14.98257 -14.36249 -13.94166 -13.77037 -13.55813 -12.83913 -12.57915 -12.47273 -12.38371 -12.25191 -12.20969 -11.94560 -11.52797 -11.04680 -10.75720 -10.30233 -10.04609 -9.73075 -8.15138 -6.37180 -0.14855 0.21898 1.40449 1.42284 1.53270 2.40606 2.70814 3.08945 3.18610 3.39707 3.56301 3.74186 3.84765 3.94951 4.22317 4.30409 4.43644 4.53090 4.63094 4.71103 4.85548 4.96011 5.13087 5.23687 5.46457 5.58533 5.77009 6.18378 6.36977 6.59355 6.90724 7.00792 7.39666 8.92612 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.040702 B = 0.008026 C = 0.007348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.757160 B = 3487.653492 C = 3809.437677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.020 3.980 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.208 3.792 10 H -0.014 1.014 11 C -0.137 4.137 12 C -0.129 4.129 13 C 0.109 3.891 14 H 0.104 0.896 15 C 0.063 3.937 16 C 0.049 3.951 17 N -0.456 5.456 18 C 0.045 3.955 19 C 0.042 3.958 20 N -0.458 5.458 21 O -0.382 6.382 22 H 0.260 0.740 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.104 0.896 26 H 0.066 0.934 27 H 0.190 0.810 28 H 0.209 0.791 29 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.489 -11.376 3.014 12.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.182 4.182 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.592 4.592 8 H 0.088 0.912 9 C 0.153 3.847 10 H 0.004 0.996 11 C -0.174 4.174 12 C -0.167 4.167 13 C 0.049 3.951 14 H 0.122 0.878 15 C -0.076 4.076 16 C -0.109 4.109 17 N -0.170 5.170 18 C -0.115 4.115 19 C -0.118 4.118 20 N -0.174 5.174 21 O -0.301 6.301 22 H 0.069 0.931 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.123 0.877 26 H 0.085 0.915 27 H 0.206 0.794 28 H 0.226 0.774 29 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -2.726 -11.096 3.132 11.847 hybrid contribution 0.092 0.949 -0.324 1.007 sum -2.634 -10.147 2.808 10.853 Atomic orbital electron populations 1.70217 1.07974 1.27342 1.48832 1.26034 0.95555 1.03386 0.93197 0.85478 0.78762 0.78335 0.78549 1.19484 1.21089 1.18467 1.21613 0.93292 0.91513 1.52791 0.91197 1.20354 0.87567 0.93695 0.83070 0.99589 1.23198 0.98560 0.94542 1.01121 1.23021 0.97615 0.97952 0.98087 1.21753 0.88533 0.84816 0.99982 0.87804 1.22888 0.98785 0.95552 0.90403 1.23825 0.92384 0.95556 0.99152 1.68495 1.06768 1.11567 1.30190 1.24351 1.02169 0.96691 0.88290 1.24393 0.91562 0.94278 1.01602 1.68228 1.08705 1.09811 1.30656 1.88788 1.75179 1.22172 1.43980 0.93129 0.90691 0.90612 0.87711 0.91500 0.79355 0.77419 0.78794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.92 13.05 21.45 0.28 -56.64 15 2 C 0.02 1.16 5.43 84.66 0.46 1.62 15 3 Si 0.96 44.75 29.54 68.60 2.03 46.78 15 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 15 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 15 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 15 7 C -0.55 -32.02 8.79 25.60 0.23 -31.79 15 8 H 0.07 3.81 7.76 -2.91 -0.02 3.79 15 9 C 0.21 11.27 3.22 30.51 0.10 11.37 15 10 H -0.01 -0.84 8.14 -2.39 -0.02 -0.85 15 11 C -0.14 -5.60 6.53 32.05 0.21 -5.39 15 12 C -0.13 -4.51 6.50 31.85 0.21 -4.30 15 13 C 0.11 4.33 3.86 30.32 0.12 4.45 15 14 H 0.10 3.50 7.91 -2.39 -0.02 3.48 15 15 C 0.06 2.37 5.80 42.55 0.25 2.62 15 16 C 0.05 1.55 10.85 84.69 0.92 2.47 15 17 N -0.46 -13.45 10.50 -195.22 -2.05 -15.50 15 18 C 0.04 1.12 11.22 84.67 0.95 2.07 15 19 C 0.04 1.21 11.22 84.67 0.95 2.16 15 20 N -0.46 -17.68 9.77 -183.29 -1.79 -19.47 15 21 O -0.38 -20.60 10.36 -148.98 -1.54 -22.14 15 22 H 0.26 15.40 8.31 -92.71 -0.77 14.63 15 23 H 0.07 2.93 8.04 -2.39 -0.02 2.91 15 24 H 0.08 2.87 8.14 -2.39 -0.02 2.85 15 25 H 0.10 2.81 8.14 -2.38 -0.02 2.79 15 26 H 0.07 2.41 7.37 -2.39 -0.02 2.39 15 27 H 0.19 4.72 7.96 -2.91 -0.02 4.69 15 28 H 0.21 3.10 8.06 -2.91 -0.02 3.08 15 29 H 0.20 4.08 8.06 -2.91 -0.02 4.06 15 Total: -1.00 -74.74 255.86 2.45 -72.29 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 1.14 Total: 9.41 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 4.38 Total: -14.74 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -3.56 Total: -91.60 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -1.54 Total: -22.14 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -74.74 2.45 -72.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699833107.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.601 kcal (2) G-P(sol) polarization free energy of solvation -74.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds