Wall clock time and date at job start Mon Mar 30 2020 02:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00479 * 2 1 4 4 H 1.48494 * 109.47606 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47079 * 300.00501 * 3 2 1 6 6 H 1.48508 * 109.47140 * 60.00225 * 3 2 1 7 7 C 1.37880 * 119.99486 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99863 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00295 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.82768 * 300.88702 * 9 7 2 11 11 C 1.54384 * 109.83063 * 179.97438 * 9 7 2 12 12 C 1.55304 * 102.25492 * 219.12939 * 11 9 7 13 13 C 1.54944 * 100.97800 * 34.11596 * 12 11 9 14 14 H 1.08996 * 110.31114 * 82.48962 * 13 12 11 15 15 C 1.50702 * 110.31104 * 204.65934 * 13 12 11 16 16 C 1.38394 * 120.00498 * 124.99699 * 15 13 12 17 17 N 1.32122 * 119.99728 * 179.97438 * 16 15 13 18 18 C 1.32150 * 120.00469 * 0.02562 * 17 16 15 19 19 C 1.38349 * 119.99921 * 359.97438 * 18 17 16 20 20 N 1.32127 * 119.99730 * 304.72645 * 15 13 12 21 21 O 1.43240 * 109.82832 * 61.87157 * 9 7 2 22 22 H 0.96997 * 119.99641 * 359.97438 * 1 2 3 23 23 H 1.09006 * 110.84230 * 100.94060 * 11 9 7 24 24 H 1.08991 * 110.84918 * 337.32624 * 11 9 7 25 25 H 1.09002 * 111.12488 * 152.05572 * 12 11 9 26 26 H 1.08995 * 111.12730 * 276.17567 * 12 11 9 27 27 H 1.07995 * 119.99617 * 0.02562 * 16 15 13 28 28 H 1.08000 * 119.99927 * 180.02562 * 18 17 16 29 29 H 1.07997 * 119.99455 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6105 -2.5563 0.8797 11 6 2.2467 -3.6789 -0.0018 12 6 1.5590 -4.6898 -0.9595 13 6 0.8869 -3.7275 -1.9710 14 1 1.6057 -3.4102 -2.7263 15 6 -0.2966 -4.3960 -2.6219 16 6 -1.5422 -3.7944 -2.5774 17 7 -2.5795 -4.3804 -3.1485 18 6 -2.4279 -5.5411 -3.7617 19 6 -1.1828 -6.1425 -3.8062 20 7 -0.1440 -5.5540 -3.2396 21 8 0.4574 -2.6020 -1.1886 22 1 -0.4849 0.8400 0.0004 23 1 2.3499 -4.1005 0.9981 24 1 3.2148 -3.3690 -0.3951 25 1 2.2938 -5.3267 -1.4519 26 1 0.8155 -5.2872 -0.4320 27 1 -1.6659 -2.8457 -2.0765 28 1 -3.2759 -6.0198 -4.2289 29 1 -1.0589 -7.0909 -4.3078 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699833114.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:07 Heat of formation + Delta-G solvation = 0.295859 kcal Electronic energy + Delta-G solvation = -14624.657530 eV Core-core repulsion = 12126.921156 eV Total energy + Delta-G solvation = -2497.736374 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.77261 -38.11292 -34.05565 -32.78061 -31.50433 -30.99298 -28.25723 -25.25969 -24.22889 -23.07354 -20.68577 -20.25097 -17.15000 -16.77637 -16.57324 -15.80056 -15.34208 -14.66376 -14.40384 -14.07511 -13.30624 -12.73224 -12.37759 -12.22271 -11.76235 -11.33122 -11.10926 -10.93892 -10.77046 -10.63454 -10.49688 -10.23785 -9.92715 -9.30297 -8.87599 -8.72973 -8.56636 -7.97589 -6.02637 -4.16436 1.08828 1.42499 3.28663 3.37254 3.40356 3.99416 4.13691 4.40969 4.53924 4.79389 4.99592 5.19730 5.38070 5.44592 5.52480 5.71305 5.77685 5.95414 6.18329 6.29712 6.34469 6.54739 6.67048 6.74778 6.78192 7.52423 7.63668 7.85794 8.08133 8.23310 8.47856 8.97572 9.55751 11.04180 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.042712 B = 0.007975 C = 0.007074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.399336 B = 3510.202018 C = 3957.062109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.079 3.921 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.207 3.793 10 H 0.042 0.958 11 C -0.146 4.146 12 C -0.135 4.135 13 C 0.128 3.872 14 H 0.079 0.921 15 C 0.091 3.909 16 C 0.079 3.921 17 N -0.444 5.444 18 C 0.029 3.971 19 C 0.040 3.960 20 N -0.440 5.440 21 O -0.354 6.354 22 H 0.261 0.739 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.187 0.813 28 H 0.162 0.838 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.190 -9.940 -5.036 11.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.126 4.126 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.582 4.582 8 H 0.079 0.921 9 C 0.152 3.848 10 H 0.060 0.940 11 C -0.183 4.183 12 C -0.174 4.174 13 C 0.068 3.932 14 H 0.096 0.904 15 C -0.049 4.049 16 C -0.081 4.081 17 N -0.158 5.158 18 C -0.131 4.131 19 C -0.120 4.120 20 N -0.156 5.156 21 O -0.273 6.273 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.204 0.796 28 H 0.179 0.821 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.529 -9.672 -5.076 11.030 hybrid contribution 0.522 0.689 -0.085 0.868 sum -1.007 -8.984 -5.162 10.410 Atomic orbital electron populations 1.70025 1.06002 1.26537 1.47362 1.25057 0.94748 0.99232 0.93602 0.86598 0.80245 0.83788 0.77659 1.19684 1.20864 1.20911 1.21424 0.92815 0.90605 1.53315 0.92059 1.20364 0.87914 0.92153 0.84363 0.93987 1.23235 1.00524 0.96272 0.98312 1.23080 0.99529 0.97660 0.97092 1.21299 0.89730 0.87881 0.94338 0.90356 1.22547 0.96934 0.91132 0.94284 1.23920 0.88370 1.01062 0.94730 1.68539 1.32942 1.08490 1.05845 1.23683 0.98288 0.93151 0.97929 1.23625 0.89822 1.00600 0.97941 1.68117 1.32831 1.08457 1.06212 1.88722 1.59370 1.43432 1.35811 0.92933 0.91953 0.91251 0.90960 0.91882 0.79649 0.82052 0.81911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.00 12.93 55.43 0.72 -24.28 15 2 C 0.08 2.20 5.41 -17.82 -0.10 2.11 15 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 15 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 7 C -0.54 -14.83 8.75 -34.44 -0.30 -15.13 15 8 H 0.06 1.63 7.52 -52.49 -0.39 1.24 15 9 C 0.21 5.15 3.36 -27.16 -0.09 5.06 15 10 H 0.04 1.13 8.14 -51.93 -0.42 0.71 15 11 C -0.15 -2.92 6.53 -24.78 -0.16 -3.08 15 12 C -0.14 -2.46 6.41 -24.48 -0.16 -2.62 15 13 C 0.13 2.59 3.94 -26.86 -0.11 2.48 15 14 H 0.08 1.59 8.14 -51.93 -0.42 1.17 15 15 C 0.09 1.72 6.15 -82.41 -0.51 1.21 15 16 C 0.08 1.50 10.57 -17.37 -0.18 1.32 15 17 N -0.44 -7.66 10.50 -13.06 -0.14 -7.80 15 18 C 0.03 0.39 11.22 -17.37 -0.20 0.20 15 19 C 0.04 0.53 11.22 -17.37 -0.19 0.34 15 20 N -0.44 -7.36 10.23 -9.28 -0.09 -7.46 15 21 O -0.35 -8.72 8.81 -35.23 -0.31 -9.04 15 22 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 23 H 0.06 1.14 8.14 -51.93 -0.42 0.71 15 24 H 0.07 1.37 7.65 -51.93 -0.40 0.97 15 25 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 26 H 0.06 1.13 8.05 -51.93 -0.42 0.71 15 27 H 0.19 3.85 7.10 -52.49 -0.37 3.48 15 28 H 0.16 1.52 8.06 -52.49 -0.42 1.10 15 29 H 0.16 1.49 8.06 -52.49 -0.42 1.07 15 LS Contribution 254.21 15.07 3.83 3.83 Total: -1.00 -30.27 254.21 -6.26 -36.53 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -3.25 Total: 0.28 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -1.99 Total: -8.11 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.48 Total: -39.53 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.31 Total: -9.04 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.27 -6.26 -36.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699833114.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.828 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds