Wall clock time and date at job start Mon Mar 30 2020 02:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31391 * 1 3 3 Si 1.86798 * 120.00063 * 2 1 4 4 H 1.48503 * 109.47009 * 269.99950 * 3 2 1 5 5 H 1.48493 * 109.47088 * 30.00288 * 3 2 1 6 6 H 1.48500 * 109.47122 * 150.00335 * 3 2 1 7 7 C 1.39020 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99981 * 179.97438 * 7 2 1 9 9 N 1.36869 * 119.99670 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99777 * 180.02562 * 9 7 2 11 11 O 1.21739 * 120.00142 * 5.13830 * 10 9 7 12 12 C 1.46551 * 120.00382 * 185.14558 * 10 9 7 13 13 C 1.38003 * 126.23937 * 5.04731 * 12 10 9 14 14 C 1.39800 * 107.08348 * 180.29616 * 13 12 10 15 15 C 1.35478 * 107.88053 * 359.73915 * 14 13 12 16 16 N 1.35593 * 108.88343 * 0.02562 * 15 14 13 17 17 C 1.46494 * 125.68158 * 180.02562 * 16 15 14 18 18 C 1.53001 * 117.49946 * 294.60926 * 17 16 15 19 19 C 1.52998 * 60.00033 * 107.49099 * 18 17 16 20 20 H 0.96993 * 120.00062 * 359.97438 * 1 2 3 21 21 H 0.97001 * 120.00664 * 0.02562 * 9 7 2 22 22 H 1.08005 * 126.45567 * 0.03607 * 13 12 10 23 23 H 1.08002 * 126.05642 * 179.77674 * 14 13 12 24 24 H 1.08001 * 125.55886 * 180.02562 * 15 14 13 25 25 H 1.09002 * 115.56089 * 148.92272 * 17 16 15 26 26 H 1.09003 * 117.50133 * 359.97438 * 18 17 16 27 27 H 1.09011 * 117.49823 * 214.98144 * 18 17 16 28 28 H 1.09008 * 117.49793 * 107.49135 * 19 18 17 29 29 H 1.08999 * 117.50065 * 252.48027 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4954 2.0464 -1.4001 5 1 1.4454 2.6526 0.7001 6 1 3.5455 1.4401 0.7000 7 6 2.0090 -1.2039 -0.0005 8 1 3.0890 -1.2039 -0.0010 9 7 1.3246 -2.3892 -0.0005 10 6 1.9985 -3.5564 -0.0005 11 8 3.2122 -3.5586 0.0939 12 6 1.2702 -4.8231 -0.1144 13 6 -0.0859 -4.9684 -0.3250 14 6 -0.3514 -6.3405 -0.3600 15 6 0.8207 -6.9957 -0.1803 16 7 1.8144 -6.0850 -0.0329 17 6 3.2305 -6.3926 0.1821 18 6 3.6113 -7.0899 1.4896 19 6 3.6428 -7.8660 0.1715 20 1 -0.4850 0.8400 0.0004 21 1 0.3546 -2.3893 -0.0005 22 1 -0.8069 -4.1720 -0.4370 23 1 -1.3193 -6.7972 -0.5053 24 1 0.9436 -8.0684 -0.1582 25 1 3.9362 -5.6695 -0.2268 26 1 2.8084 -7.3194 2.1901 27 1 4.5677 -6.8255 1.9410 28 1 4.6199 -8.1122 -0.2444 29 1 2.8608 -8.6067 0.0047 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701226501.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:41 Heat of formation + Delta-G solvation = 17.132961 kcal Electronic energy + Delta-G solvation = -14403.753046 eV Core-core repulsion = 11906.746783 eV Total energy + Delta-G solvation = -2497.006263 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.25633 -39.64631 -37.76226 -36.06266 -33.43181 -31.50680 -30.25730 -26.96617 -24.12579 -23.46904 -23.10209 -21.19049 -20.43232 -19.52888 -18.61433 -17.09574 -16.50603 -16.30660 -15.85196 -15.76074 -14.85889 -14.70428 -14.48189 -13.74377 -13.55743 -13.29390 -13.13585 -12.95965 -12.48647 -12.44711 -12.12590 -11.74506 -11.62227 -11.58460 -10.51788 -10.12470 -9.49498 -9.10066 -8.54077 -6.00396 0.63794 1.40058 1.42634 1.53951 1.80937 1.90537 2.28513 2.47619 2.77843 3.17060 3.25852 3.57934 3.88459 3.98591 4.16483 4.26607 4.47637 4.60416 4.63609 4.82071 4.92809 5.07458 5.23852 5.31489 5.37828 5.80654 6.01526 6.11152 6.48585 6.52906 7.01786 7.43687 7.98241 8.63765 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.043138 B = 0.007432 C = 0.006471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.930686 B = 3766.373783 C = 4326.000116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.010 4.010 3 Si 1.002 2.998 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.084 0.916 9 N -0.549 5.549 10 C 0.495 3.505 11 O -0.639 6.639 12 C -0.056 4.056 13 C -0.167 4.167 14 C -0.210 4.210 15 C 0.007 3.993 16 N -0.389 5.389 17 C 0.019 3.981 18 C -0.175 4.175 19 C -0.137 4.137 20 H 0.282 0.718 21 H 0.398 0.602 22 H 0.139 0.861 23 H 0.171 0.829 24 H 0.206 0.794 25 H 0.116 0.884 26 H 0.102 0.898 27 H 0.112 0.888 28 H 0.130 0.870 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.651 -13.871 0.337 13.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.211 4.211 3 Si 0.824 3.176 4 H -0.193 1.193 5 H -0.191 1.191 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.102 0.898 9 N -0.183 5.183 10 C 0.285 3.715 11 O -0.530 6.530 12 C -0.170 4.170 13 C -0.194 4.194 14 C -0.234 4.234 15 C -0.127 4.127 16 N -0.061 5.061 17 C -0.084 4.084 18 C -0.213 4.213 19 C -0.174 4.174 20 H 0.092 0.908 21 H 0.232 0.768 22 H 0.157 0.843 23 H 0.189 0.811 24 H 0.223 0.777 25 H 0.134 0.866 26 H 0.120 0.880 27 H 0.130 0.870 28 H 0.148 0.852 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.663 -13.738 0.441 13.845 hybrid contribution -0.189 1.234 0.008 1.248 sum 1.475 -12.504 0.449 12.599 Atomic orbital electron populations 1.69676 1.07094 1.29839 1.48686 1.26210 0.96622 1.02704 0.95598 0.84809 0.77831 0.76056 0.78890 1.19271 1.19149 1.19558 1.19747 0.92956 0.83533 1.50414 0.89819 1.41581 1.09460 1.04172 1.63068 1.17240 0.86705 0.83556 0.84021 1.90533 1.15177 1.87997 1.59273 1.20214 0.93775 0.85599 1.17385 1.21572 0.92487 0.98701 1.06645 1.21087 0.99170 0.92018 1.11099 1.22517 0.86397 0.96522 1.07227 1.43440 1.06793 1.04394 1.51463 1.22231 0.80752 0.99135 1.06261 1.23468 1.04118 1.02443 0.91276 1.23565 1.05067 0.90212 0.98550 0.90827 0.76751 0.84333 0.81135 0.77687 0.86642 0.88006 0.86996 0.85205 0.85590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.45 13.05 21.68 0.28 -50.17 15 2 C -0.01 -0.57 5.50 84.95 0.47 -0.10 15 3 Si 1.00 43.32 29.55 68.60 2.03 45.35 15 4 H -0.27 -11.14 7.11 99.48 0.71 -10.44 15 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 6 H -0.27 -11.73 7.11 99.48 0.71 -11.03 15 7 C -0.34 -19.98 9.67 84.09 0.81 -19.16 15 8 H 0.08 5.21 7.16 -2.91 -0.02 5.19 15 9 N -0.55 -30.91 5.25 -310.73 -1.63 -32.54 15 10 C 0.50 27.01 7.72 86.41 0.67 27.68 15 11 O -0.64 -38.02 14.41 -4.47 -0.06 -38.09 15 12 C -0.06 -2.52 6.89 40.34 0.28 -2.24 15 13 C -0.17 -6.46 10.35 22.59 0.23 -6.23 15 14 C -0.21 -6.26 10.81 22.01 0.24 -6.02 15 15 C 0.01 0.20 10.76 83.47 0.90 1.10 15 16 N -0.39 -14.16 3.09 -488.61 -1.51 -15.67 15 17 C 0.02 0.63 6.13 44.99 0.28 0.90 15 18 C -0.18 -4.35 10.44 30.59 0.32 -4.03 15 19 C -0.14 -2.68 9.96 30.59 0.30 -2.37 15 20 H 0.28 14.39 8.31 -92.71 -0.77 13.62 15 21 H 0.40 21.55 6.84 -92.71 -0.63 20.91 15 22 H 0.14 5.25 7.49 -2.91 -0.02 5.23 15 23 H 0.17 3.78 8.06 -2.91 -0.02 3.76 15 24 H 0.21 3.58 6.88 -2.91 -0.02 3.56 15 25 H 0.12 4.64 6.68 -2.39 -0.02 4.62 15 26 H 0.10 2.46 8.14 -2.39 -0.02 2.44 15 27 H 0.11 2.60 8.14 -2.38 -0.02 2.58 15 28 H 0.13 1.99 8.14 -2.38 -0.02 1.97 15 29 H 0.13 1.83 6.71 -2.39 -0.02 1.81 15 Total: -1.00 -71.62 257.45 4.14 -67.48 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.54 Total: 34.10 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 4.50 Total: -10.47 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -2.86 Total: -98.38 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.06 Total: -38.09 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -71.62 4.14 -67.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701226501.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.614 kcal (2) G-P(sol) polarization free energy of solvation -71.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds