Wall clock time and date at job start Mon Mar 30 2020 02:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99668 * 2 1 4 4 H 1.48506 * 109.46937 * 270.00056 * 3 2 1 5 5 H 1.48498 * 109.47720 * 29.99943 * 3 2 1 6 6 H 1.48498 * 109.47375 * 149.99973 * 3 2 1 7 7 C 1.37872 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00220 * 161.00023 * 7 2 1 9 9 C 1.50698 * 119.99782 * 341.00185 * 7 2 1 10 10 C 1.53002 * 115.55414 * 324.78624 * 9 7 2 11 11 N 1.46501 * 109.47130 * 279.12027 * 10 9 7 12 12 C 1.34122 * 125.70472 * 123.53062 * 11 10 9 13 13 C 1.38453 * 107.36930 * 180.02562 * 12 11 10 14 14 C 1.46672 * 126.47771 * 180.02562 * 13 12 11 15 15 O 1.21306 * 120.00155 * 179.97438 * 14 13 12 16 16 C 1.41551 * 107.04884 * 0.26256 * 13 12 11 17 17 N 1.30377 * 107.98363 * 359.55405 * 16 13 12 18 18 C 1.53000 * 117.51732 * 110.48868 * 9 7 2 19 19 C 1.53000 * 60.00289 * 107.48231 * 18 9 7 20 20 H 0.96999 * 119.99986 * 5.01646 * 1 2 3 21 21 H 1.09000 * 109.47204 * 159.11742 * 10 9 7 22 22 H 1.08999 * 109.46566 * 39.11857 * 10 9 7 23 23 H 1.08004 * 126.32006 * 359.97438 * 12 11 10 24 24 H 1.08007 * 119.99861 * 0.02562 * 14 13 12 25 25 H 1.08003 * 126.01133 * 179.72322 * 16 13 12 26 26 H 1.08997 * 117.50079 * 214.96629 * 18 9 7 27 27 H 1.08995 * 117.50101 * 359.97438 * 18 9 7 28 28 H 1.09005 * 117.49824 * 252.51840 * 19 18 9 29 29 H 1.08995 * 117.50401 * 107.49157 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0404 -1.2196 -0.3039 9 6 1.3127 -2.4633 0.4260 10 6 0.2839 -2.3100 1.5481 11 7 0.9732 -2.2683 2.8402 12 6 0.8774 -1.2849 3.7471 13 6 1.6818 -1.6315 4.8193 14 6 1.8854 -0.8517 6.0447 15 8 2.6205 -1.2695 6.9145 16 6 2.2750 -2.8783 4.5070 17 7 1.8420 -3.2475 3.3340 18 6 1.0299 -3.5102 -0.6534 19 6 2.1256 -3.7589 0.3851 20 1 -0.4850 0.8368 -0.0735 21 1 -0.4027 -3.1564 1.5297 22 1 -0.2751 -1.3854 1.4045 23 1 0.2831 -0.3875 3.6572 24 1 1.3802 0.0943 6.1730 25 1 2.9630 -3.4284 5.1319 26 1 0.1111 -4.0896 -0.5641 27 1 1.3439 -3.2807 -1.6716 28 1 3.1608 -3.6931 0.0501 29 1 1.9276 -4.5019 1.1575 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703478926.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:22 Heat of formation + Delta-G solvation = 64.890246 kcal Electronic energy + Delta-G solvation = -14634.854136 eV Core-core repulsion = 12139.918785 eV Total energy + Delta-G solvation = -2494.935351 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.66052 -38.06746 -36.73539 -32.47180 -31.93585 -30.05943 -26.53805 -25.61396 -23.33624 -21.23209 -20.74840 -19.88271 -19.07164 -16.76385 -16.05087 -15.38399 -14.94706 -14.60927 -14.36779 -13.94004 -13.52560 -13.40599 -12.70891 -12.27022 -11.88111 -11.58563 -11.13894 -10.94493 -10.59551 -10.53258 -10.24542 -9.80432 -9.39542 -9.27135 -8.96900 -8.79137 -8.31157 -8.03581 -6.36357 -4.31962 1.79156 2.69951 3.10657 3.16963 3.20515 3.28195 3.72325 4.17454 4.72466 4.83186 5.09184 5.29716 5.44853 5.84100 5.90463 5.97789 6.09470 6.25227 6.30177 6.44972 6.69703 6.70969 6.88297 7.06340 7.17763 7.27017 7.60508 7.68356 7.93429 8.13590 8.30594 8.61536 9.24722 10.67053 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.023755 B = 0.011330 C = 0.008642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.440964 B = 2470.613314 C = 3239.252908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.480 4.480 8 H 0.063 0.937 9 C 0.031 3.969 10 C 0.139 3.861 11 N -0.309 5.309 12 C 0.129 3.871 13 C -0.372 4.372 14 C 0.420 3.580 15 O -0.497 6.497 16 C 0.084 3.916 17 N -0.296 5.296 18 C -0.195 4.195 19 C -0.187 4.187 20 H 0.268 0.732 21 H 0.058 0.942 22 H 0.151 0.849 23 H 0.179 0.821 24 H 0.091 0.909 25 H 0.180 0.820 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.738 -0.327 4.925 5.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.517 4.517 8 H 0.081 0.919 9 C 0.030 3.970 10 C 0.020 3.980 11 N -0.083 5.083 12 C -0.028 4.028 13 C -0.385 4.385 14 C 0.281 3.719 15 O -0.373 6.373 16 C -0.103 4.103 17 N -0.116 5.116 18 C -0.233 4.233 19 C -0.224 4.224 20 H 0.078 0.922 21 H 0.076 0.924 22 H 0.168 0.832 23 H 0.196 0.804 24 H 0.107 0.893 25 H 0.197 0.803 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.546 -1.343 4.368 4.824 hybrid contribution 0.333 1.539 0.211 1.588 sum -1.212 0.196 4.579 4.740 Atomic orbital electron populations 1.69658 1.06046 1.27467 1.49203 1.24951 0.94803 0.99330 0.94257 0.86601 0.80437 0.82713 0.78647 1.20371 1.20616 1.19549 1.20560 0.97345 0.89938 1.43862 0.91869 1.19060 0.95670 0.89354 0.92941 1.22240 0.93408 1.05960 0.76359 1.49018 1.31388 1.13074 1.14828 1.23222 0.97113 0.93874 0.88594 1.21263 1.13216 1.02565 1.01485 1.22849 0.78131 0.88171 0.82736 1.90466 1.33034 1.71356 1.42437 1.23943 0.98329 0.94631 0.93420 1.77140 1.08916 1.13928 1.11601 1.23035 0.98423 1.05968 0.95907 1.22841 0.95691 1.02124 1.01761 0.92207 0.92395 0.83238 0.80427 0.89278 0.80303 0.91551 0.90093 0.90859 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.75 10.93 55.43 0.61 -21.14 15 2 C 0.07 1.69 5.10 -17.82 -0.09 1.59 15 3 Si 0.89 19.51 29.58 -169.99 -5.03 14.49 15 4 H -0.28 -6.14 7.11 56.52 0.40 -5.73 15 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 15 7 C -0.48 -12.31 9.00 -34.44 -0.31 -12.62 15 8 H 0.06 1.68 7.89 -52.49 -0.41 1.27 15 9 C 0.03 0.72 1.94 -155.66 -0.30 0.41 15 10 C 0.14 2.96 6.17 -4.04 -0.02 2.93 15 11 N -0.31 -6.23 3.63 -60.73 -0.22 -6.45 15 12 C 0.13 2.24 11.46 -16.47 -0.19 2.05 15 13 C -0.37 -6.34 6.12 -105.15 -0.64 -6.98 15 14 C 0.42 6.29 11.68 34.14 0.40 6.69 15 15 O -0.50 -8.99 17.74 5.53 0.10 -8.89 15 16 C 0.08 1.53 11.84 -16.91 -0.20 1.33 15 17 N -0.30 -6.02 10.87 30.91 0.34 -5.68 15 18 C -0.19 -4.21 9.88 -26.73 -0.26 -4.47 15 19 C -0.19 -4.05 9.17 -26.73 -0.24 -4.30 15 20 H 0.27 6.24 8.32 -40.82 -0.34 5.90 15 21 H 0.06 1.16 7.94 -51.93 -0.41 0.75 15 22 H 0.15 3.32 5.16 -51.93 -0.27 3.05 15 23 H 0.18 2.54 8.06 -52.48 -0.42 2.11 15 24 H 0.09 0.98 8.06 -52.48 -0.42 0.56 15 25 H 0.18 2.85 8.06 -52.48 -0.42 2.42 15 26 H 0.07 1.32 8.08 -51.93 -0.42 0.90 15 27 H 0.08 1.77 8.14 -51.93 -0.42 1.35 15 28 H 0.07 1.61 8.14 -51.93 -0.42 1.18 15 29 H 0.08 1.74 7.40 -51.93 -0.38 1.36 15 LS Contribution 261.67 15.07 3.94 3.94 Total: -1.00 -27.97 261.67 -5.28 -33.25 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -3.15 Total: 3.82 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -1.87 Total: -13.34 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.72 Total: -33.27 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.10 Total: -8.89 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -27.97 -5.28 -33.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703478926.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.143 kcal (2) G-P(sol) polarization free energy of solvation -27.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds