Wall clock time and date at job start Mon Mar 30 2020 02:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99668 * 2 1 4 4 H 1.48506 * 109.46937 * 270.00056 * 3 2 1 5 5 H 1.48498 * 109.47720 * 29.99943 * 3 2 1 6 6 H 1.48498 * 109.47375 * 149.99973 * 3 2 1 7 7 C 1.37872 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00220 * 161.00023 * 7 2 1 9 9 C 1.50698 * 119.99782 * 341.00185 * 7 2 1 10 10 C 1.53002 * 115.55414 * 324.78624 * 9 7 2 11 11 N 1.46501 * 109.47130 * 279.12027 * 10 9 7 12 12 C 1.34122 * 125.70472 * 123.53062 * 11 10 9 13 13 C 1.38453 * 107.36930 * 180.02562 * 12 11 10 14 14 C 1.46672 * 126.47771 * 180.02562 * 13 12 11 15 15 O 1.21306 * 120.00155 * 179.97438 * 14 13 12 16 16 C 1.41551 * 107.04884 * 0.26256 * 13 12 11 17 17 N 1.30377 * 107.98363 * 359.55405 * 16 13 12 18 18 C 1.53000 * 117.51732 * 110.48868 * 9 7 2 19 19 C 1.53000 * 60.00289 * 107.48231 * 18 9 7 20 20 H 0.96999 * 119.99986 * 5.01646 * 1 2 3 21 21 H 1.09000 * 109.47204 * 159.11742 * 10 9 7 22 22 H 1.08999 * 109.46566 * 39.11857 * 10 9 7 23 23 H 1.08004 * 126.32006 * 359.97438 * 12 11 10 24 24 H 1.08007 * 119.99861 * 0.02562 * 14 13 12 25 25 H 1.08003 * 126.01133 * 179.72322 * 16 13 12 26 26 H 1.08997 * 117.50079 * 214.96629 * 18 9 7 27 27 H 1.08995 * 117.50101 * 359.97438 * 18 9 7 28 28 H 1.09005 * 117.49824 * 252.51840 * 19 18 9 29 29 H 1.08995 * 117.50401 * 107.49157 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0404 -1.2196 -0.3039 9 6 1.3127 -2.4633 0.4260 10 6 0.2839 -2.3100 1.5481 11 7 0.9732 -2.2683 2.8402 12 6 0.8774 -1.2849 3.7471 13 6 1.6818 -1.6315 4.8193 14 6 1.8854 -0.8517 6.0447 15 8 2.6205 -1.2695 6.9145 16 6 2.2750 -2.8783 4.5070 17 7 1.8420 -3.2475 3.3340 18 6 1.0299 -3.5102 -0.6534 19 6 2.1256 -3.7589 0.3851 20 1 -0.4850 0.8368 -0.0735 21 1 -0.4027 -3.1564 1.5297 22 1 -0.2751 -1.3854 1.4045 23 1 0.2831 -0.3875 3.6572 24 1 1.3802 0.0943 6.1730 25 1 2.9630 -3.4284 5.1319 26 1 0.1111 -4.0896 -0.5641 27 1 1.3439 -3.2807 -1.6716 28 1 3.1608 -3.6931 0.0501 29 1 1.9276 -4.5019 1.1575 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703478926.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:22 Heat of formation + Delta-G solvation = 49.253683 kcal Electronic energy + Delta-G solvation = -14635.532189 eV Core-core repulsion = 12139.918785 eV Total energy + Delta-G solvation = -2495.613404 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.07357 -39.38668 -38.43583 -34.33616 -33.45478 -31.44016 -28.17759 -27.40011 -24.65383 -22.95248 -22.25936 -21.30641 -20.70653 -18.40535 -17.60724 -16.82844 -16.54846 -16.15373 -15.87126 -15.48546 -15.00657 -14.89193 -14.27688 -13.68931 -13.59299 -13.26003 -12.91330 -12.67020 -12.33554 -12.20022 -11.86264 -11.49963 -11.17895 -10.71558 -10.54289 -10.33008 -10.11740 -9.45977 -8.22383 -6.24335 0.52374 1.29572 1.36749 1.43811 1.53179 1.72122 2.37265 2.44425 2.87251 3.56181 3.65410 3.85901 4.07293 4.19262 4.34673 4.55543 4.60426 4.62756 4.76950 4.96156 5.00984 5.05813 5.18732 5.37010 5.53006 5.69371 5.81353 6.15816 6.31083 6.67975 6.73778 6.87300 7.33780 8.80150 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.023755 B = 0.011330 C = 0.008642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.440964 B = 2470.613314 C = 3239.252908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.045 3.955 3 Si 0.938 3.062 4 H -0.280 1.280 5 H -0.264 1.264 6 H -0.283 1.283 7 C -0.510 4.510 8 H 0.040 0.960 9 C 0.010 3.990 10 C 0.150 3.850 11 N -0.328 5.328 12 C 0.129 3.871 13 C -0.375 4.375 14 C 0.430 3.570 15 O -0.529 6.529 16 C 0.075 3.925 17 N -0.327 5.327 18 C -0.189 4.189 19 C -0.178 4.178 20 H 0.274 0.726 21 H 0.065 0.935 22 H 0.143 0.857 23 H 0.209 0.791 24 H 0.146 0.854 25 H 0.195 0.805 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.442 0.850 5.808 6.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.157 4.157 3 Si 0.764 3.236 4 H -0.206 1.206 5 H -0.188 1.188 6 H -0.209 1.209 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.009 3.991 10 C 0.031 3.969 11 N -0.103 5.103 12 C -0.026 4.026 13 C -0.388 4.388 14 C 0.293 3.707 15 O -0.406 6.406 16 C -0.112 4.112 17 N -0.147 5.147 18 C -0.227 4.227 19 C -0.215 4.215 20 H 0.084 0.916 21 H 0.083 0.917 22 H 0.160 0.840 23 H 0.226 0.774 24 H 0.162 0.838 25 H 0.212 0.788 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.266 -0.163 5.253 5.723 hybrid contribution 0.572 1.168 -0.051 1.301 sum -1.694 1.004 5.202 5.563 Atomic orbital electron populations 1.69708 1.06420 1.28332 1.48561 1.25371 0.95477 1.01070 0.93740 0.85863 0.79066 0.80310 0.78336 1.20617 1.18819 1.20873 1.20623 0.96658 0.91807 1.45600 0.94216 1.19187 0.96706 0.88920 0.94241 1.21947 0.92813 1.05705 0.76463 1.48933 1.32256 1.14067 1.15029 1.23785 0.96939 0.94062 0.87860 1.21642 1.12550 1.02237 1.02390 1.23466 0.77194 0.89077 0.80929 1.90471 1.34613 1.72334 1.43216 1.24370 0.98266 0.95511 0.93064 1.77079 1.09973 1.14935 1.12727 1.23039 0.99023 1.05463 0.95216 1.22729 0.95173 1.01754 1.01883 0.91605 0.91722 0.84017 0.77447 0.83816 0.78815 0.89694 0.90875 0.91854 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -42.60 10.93 21.45 0.23 -42.37 15 2 C 0.04 2.17 5.10 84.65 0.43 2.60 15 3 Si 0.94 39.19 29.58 68.60 2.03 41.22 15 4 H -0.28 -11.76 7.11 99.48 0.71 -11.05 15 5 H -0.26 -10.24 7.11 99.48 0.71 -9.53 15 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 7 C -0.51 -26.27 9.00 25.60 0.23 -26.04 15 8 H 0.04 2.17 7.89 -2.91 -0.02 2.14 15 9 C 0.01 0.48 1.94 -52.93 -0.10 0.38 15 10 C 0.15 6.27 6.17 86.38 0.53 6.80 15 11 N -0.33 -12.88 3.63 -346.04 -1.26 -14.14 15 12 C 0.13 4.20 11.46 84.39 0.97 5.17 15 13 C -0.38 -11.95 6.12 -20.21 -0.12 -12.08 15 14 C 0.43 11.50 11.68 70.02 0.82 12.32 15 15 O -0.53 -17.93 17.74 -3.11 -0.06 -17.99 15 16 C 0.07 2.66 11.84 85.73 1.01 3.67 15 17 N -0.33 -13.12 10.87 -56.13 -0.61 -13.73 15 18 C -0.19 -8.10 9.88 30.59 0.30 -7.79 15 19 C -0.18 -7.76 9.17 30.60 0.28 -7.47 15 20 H 0.27 12.24 8.32 -92.71 -0.77 11.47 15 21 H 0.06 2.53 7.94 -2.39 -0.02 2.51 15 22 H 0.14 6.14 5.16 -2.39 -0.01 6.12 15 23 H 0.21 5.24 8.06 -2.91 -0.02 5.22 15 24 H 0.15 2.40 8.06 -2.91 -0.02 2.38 15 25 H 0.20 6.02 8.06 -2.91 -0.02 5.99 15 26 H 0.08 3.28 8.08 -2.39 -0.02 3.26 15 27 H 0.07 3.20 8.14 -2.39 -0.02 3.18 15 28 H 0.06 2.83 8.14 -2.38 -0.02 2.81 15 29 H 0.09 3.69 7.40 -2.39 -0.02 3.67 15 Total: -1.00 -58.72 261.67 5.84 -52.88 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 1.15 Total: 16.56 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 4.35 Total: -22.43 kcal Atomic # 7 Polarization: -68.60 SS G_CDS: -1.63 Total: -70.24 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.06 Total: -17.99 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -58.72 5.84 -52.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703478926.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.134 kcal (2) G-P(sol) polarization free energy of solvation -58.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds