Wall clock time and date at job start Mon Mar 30 2020 02:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00089 * 2 1 4 4 H 1.48504 * 109.47282 * 240.00487 * 3 2 1 5 5 H 1.48496 * 109.47233 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47189 * 120.00391 * 3 2 1 7 7 C 1.37878 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99679 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00425 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47229 * 179.97438 * 9 7 2 11 11 O 1.21422 * 120.00252 * 0.02562 * 10 9 7 12 12 C 1.41486 * 120.00230 * 179.97438 * 10 9 7 13 13 C 1.38056 * 126.97020 * 0.02562 * 12 10 9 14 14 N 1.32986 * 107.55863 * 179.97438 * 13 12 10 15 15 C 1.31492 * 109.93628 * 359.94782 * 14 13 12 16 16 N 1.34163 * 109.25066 * 0.14621 * 15 14 13 17 17 C 1.47006 * 111.37227 * 179.73959 * 16 15 14 18 18 C 1.54395 * 105.47389 * 17.08160 * 17 16 15 19 19 C 1.51706 * 140.81265 * 180.15077 * 15 14 13 20 20 H 0.97001 * 120.00165 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.47060 * 60.00274 * 9 7 2 22 22 H 1.09000 * 109.46747 * 300.00253 * 9 7 2 23 23 H 1.08000 * 126.21932 * 359.91079 * 13 12 10 24 24 H 1.08997 * 110.25005 * 136.08577 * 17 16 15 25 25 H 1.09001 * 110.24881 * 257.99739 * 17 16 15 26 26 H 1.09004 * 110.98518 * 216.26365 * 18 17 16 27 27 H 1.08998 * 110.98444 * 92.45449 * 18 17 16 28 28 H 1.08999 * 110.47503 * 282.13179 * 19 15 14 29 29 H 1.08993 * 110.48109 * 44.75854 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0018 11 8 3.4240 -3.4228 -0.0022 12 6 1.7587 -4.9786 -0.0015 13 6 0.4420 -5.3937 -0.0006 14 7 0.4407 -6.7236 -0.0012 15 6 1.6764 -7.1732 -0.0035 16 7 2.5251 -6.1342 -0.0013 17 6 3.9242 -6.5853 0.0024 18 6 3.8809 -8.0655 -0.4347 19 6 2.4536 -8.4760 -0.0079 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5568 -0.8904 22 1 0.6247 -2.5571 0.8897 23 1 -0.4286 -4.7547 0.0014 24 1 4.5112 -6.0000 -0.7053 25 1 4.3459 -6.4986 1.0039 26 1 4.6309 -8.6515 0.0966 27 1 4.0076 -8.1578 -1.5133 28 1 2.4655 -8.9163 0.9891 29 1 2.0258 -9.1729 -0.7285 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719123514.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:28 Heat of formation + Delta-G solvation = 2.902138 kcal Electronic energy + Delta-G solvation = -14353.341626 eV Core-core repulsion = 11855.718268 eV Total energy + Delta-G solvation = -2497.623357 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.55610 -39.94059 -37.40761 -35.14437 -32.98634 -31.76318 -29.63210 -28.54692 -25.84053 -23.69983 -23.00340 -21.08272 -20.22927 -18.59503 -17.82086 -17.26604 -16.79973 -16.05389 -15.76156 -15.64765 -14.75350 -14.72903 -14.57194 -14.21592 -14.06071 -13.27548 -13.19262 -12.87894 -12.59852 -12.52962 -12.11167 -12.00362 -11.49927 -11.26267 -10.74842 -10.64389 -10.52258 -9.49368 -8.26270 -6.35369 -0.02949 1.38168 1.41077 1.49448 1.58510 1.65234 2.17531 2.38965 2.79525 3.08285 3.33057 3.57149 3.78026 3.89411 4.27955 4.30517 4.43097 4.52670 4.60396 4.83120 4.94923 5.03360 5.09311 5.23855 5.24245 5.53133 5.68605 5.91207 6.08085 6.66828 6.75377 6.91690 7.33130 8.85640 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.057787 B = 0.006646 C = 0.006009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.424643 B = 4212.020215 C = 4658.545493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.055 0.945 9 C -0.007 4.007 10 C 0.424 3.576 11 O -0.512 6.512 12 C -0.133 4.133 13 C 0.074 3.926 14 N -0.518 5.518 15 C 0.208 3.792 16 N -0.455 5.455 17 C 0.084 3.916 18 C -0.108 4.108 19 C -0.039 4.039 20 H 0.268 0.732 21 H 0.048 0.952 22 H 0.049 0.951 23 H 0.197 0.803 24 H 0.082 0.918 25 H 0.099 0.901 26 H 0.145 0.855 27 H 0.098 0.902 28 H 0.124 0.876 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.128 -17.849 -0.191 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.073 0.927 9 C -0.044 4.044 10 C 0.308 3.692 11 O -0.392 6.392 12 C -0.245 4.245 13 C -0.082 4.082 14 N -0.238 5.238 15 C -0.054 4.054 16 N -0.136 5.136 17 C -0.036 4.036 18 C -0.146 4.146 19 C -0.077 4.077 20 H 0.077 0.923 21 H 0.066 0.934 22 H 0.066 0.934 23 H 0.214 0.786 24 H 0.101 0.899 25 H 0.117 0.883 26 H 0.163 0.837 27 H 0.117 0.883 28 H 0.142 0.858 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.166 -17.964 -0.190 18.994 hybrid contribution 0.630 1.985 0.028 2.083 sum 6.796 -15.980 -0.162 17.365 Atomic orbital electron populations 1.70028 1.07190 1.28257 1.50665 1.25806 0.95863 1.02778 0.94301 0.85508 0.78389 0.78269 0.78909 1.19685 1.19775 1.19692 1.21342 0.93636 0.91462 1.51968 0.92687 1.19294 0.94763 0.91273 0.99079 1.21042 0.90113 0.88451 0.69634 1.90369 1.19997 1.88422 1.40462 1.20876 0.92719 0.88538 1.22335 1.23443 0.94851 0.91131 0.98798 1.69720 1.20763 1.10296 1.22992 1.25852 0.86113 0.93479 0.99979 1.46758 1.10460 1.05953 1.50424 1.22912 0.77780 0.98438 1.04504 1.22885 0.97011 0.90279 1.04436 1.21142 0.91631 0.88452 1.06512 0.92271 0.93386 0.93365 0.78606 0.89909 0.88267 0.83724 0.88328 0.85762 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.94 13.29 21.45 0.28 -54.66 15 2 C 0.01 0.68 5.46 84.66 0.46 1.14 15 3 Si 0.96 45.72 29.54 68.60 2.03 47.74 15 4 H -0.27 -12.61 7.11 99.48 0.71 -11.90 15 5 H -0.27 -12.23 7.11 99.48 0.71 -11.53 15 6 H -0.27 -12.61 7.11 99.48 0.71 -11.90 15 7 C -0.55 -32.86 8.92 25.60 0.23 -32.63 15 8 H 0.05 3.42 6.75 -2.91 -0.02 3.40 15 9 C -0.01 -0.36 4.77 29.10 0.14 -0.22 15 10 C 0.42 20.92 6.94 26.48 0.18 21.10 15 11 O -0.51 -27.36 16.09 -3.47 -0.06 -27.41 15 12 C -0.13 -5.50 6.90 38.82 0.27 -5.23 15 13 C 0.07 2.82 11.37 84.47 0.96 3.79 15 14 N -0.52 -18.18 11.20 -185.38 -2.08 -20.26 15 15 C 0.21 6.00 8.55 138.44 1.18 7.19 15 16 N -0.45 -15.07 3.61 -500.28 -1.81 -16.88 15 17 C 0.08 1.90 7.69 86.76 0.67 2.57 15 18 C -0.11 -1.17 7.18 31.59 0.23 -0.94 15 19 C -0.04 -0.54 6.86 30.69 0.21 -0.33 15 20 H 0.27 14.97 8.31 -92.71 -0.77 14.20 15 21 H 0.05 2.63 8.14 -2.38 -0.02 2.61 15 22 H 0.05 2.64 8.14 -2.39 -0.02 2.62 15 23 H 0.20 6.91 7.96 -2.91 -0.02 6.89 15 24 H 0.08 2.10 8.14 -2.39 -0.02 2.08 15 25 H 0.10 2.07 8.14 -2.39 -0.02 2.05 15 26 H 0.14 0.44 8.14 -2.39 -0.02 0.42 15 27 H 0.10 0.93 8.14 -2.39 -0.02 0.91 15 28 H 0.12 1.21 8.14 -2.39 -0.02 1.19 15 29 H 0.12 1.25 8.14 -2.39 -0.02 1.23 15 Total: -1.00 -76.82 257.84 4.05 -72.76 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: 1.15 Total: 2.28 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 4.53 Total: -3.58 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -3.60 Total: -91.79 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.06 Total: -27.41 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -76.82 4.05 -72.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719123514.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.667 kcal (2) G-P(sol) polarization free energy of solvation -76.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds