Wall clock time and date at job start Mon Mar 30 2020 03:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47440 * 48.32302 * 3 2 1 5 5 H 1.08999 * 110.54185 * 303.60426 * 4 3 2 6 6 C 1.51439 * 110.61017 * 180.57814 * 4 3 2 7 7 C 1.50699 * 126.41388 * 61.51853 * 6 4 3 8 8 N 1.27568 * 107.16667 * 241.20032 * 6 4 3 9 9 N 1.39149 * 113.16291 * 0.47114 * 8 6 4 10 10 C 1.46500 * 124.43780 * 179.76837 * 9 8 6 11 11 C 1.50696 * 109.47324 * 269.69713 * 10 9 8 12 12 H 1.07999 * 119.99822 * 0.02562 * 11 10 9 13 13 C 1.37884 * 120.00126 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99707 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 119.99956 * 0.27447 * 13 11 10 16 16 H 1.48503 * 109.47407 * 269.72718 * 15 13 11 17 17 H 1.48505 * 109.47281 * 29.72474 * 15 13 11 18 18 H 1.48501 * 109.47274 * 149.72572 * 15 13 11 19 19 C 1.34946 * 111.12326 * 359.49787 * 9 8 6 20 20 O 1.21300 * 127.50073 * 180.24583 * 19 9 8 21 21 H 4.44645 * 5.63360 * 180.02562 * 4 1 2 22 22 H 1.09002 * 109.47552 * 288.31753 * 3 2 1 23 23 H 1.09008 * 109.46835 * 168.32081 * 3 2 1 24 24 H 1.08995 * 109.47159 * 90.00444 * 7 6 4 25 25 H 1.09004 * 109.46880 * 209.99876 * 7 6 4 26 26 H 1.08999 * 109.47488 * 329.99375 * 7 6 4 27 27 H 1.08996 * 109.47197 * 149.69451 * 10 9 8 28 28 H 1.09004 * 109.46923 * 29.70147 * 10 9 8 29 29 H 0.97005 * 119.99656 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -0.9582 -1.0774 5 1 2.7518 -1.9584 -0.9221 6 6 4.6705 -0.9882 -1.0903 7 6 5.5664 -1.4215 0.0414 8 7 5.0453 -0.5844 -2.2409 9 7 3.9838 -0.2496 -3.0760 10 6 4.1324 0.2460 -4.4466 11 6 4.2139 1.7507 -4.4306 12 1 4.1608 2.2844 -3.4933 13 6 4.3562 2.4460 -5.6128 14 7 4.4279 3.7591 -5.5987 15 14 4.4404 1.5233 -7.2347 16 1 5.8558 1.2020 -7.5487 17 1 3.6588 0.2649 -7.1295 18 1 3.8733 2.3692 -8.3155 19 6 2.7994 -0.4468 -2.4600 20 8 1.6906 -0.2560 -2.9132 21 1 -1.0498 -0.0001 -0.0004 22 1 3.0095 -0.3222 0.9756 23 1 3.0088 1.0073 -0.2080 24 1 5.7603 -2.4911 -0.0379 25 1 6.5088 -0.8765 -0.0122 26 1 5.0781 -1.2102 0.9927 27 1 3.2730 -0.0650 -5.0406 28 1 5.0433 -0.1626 -4.8839 29 1 4.5284 4.2483 -6.4304 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899346831.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:17 Heat of formation + Delta-G solvation = 45.805343 kcal Electronic energy + Delta-G solvation = -14437.218083 eV Core-core repulsion = 11941.455148 eV Total energy + Delta-G solvation = -2495.762935 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.33045 -38.50213 -36.41903 -35.17116 -33.93460 -31.51654 -31.02716 -28.41730 -26.71094 -24.23380 -21.91394 -20.63518 -19.32776 -18.96202 -17.85119 -17.11400 -16.45474 -16.41134 -15.73992 -14.98262 -14.68857 -14.48547 -14.35991 -14.03494 -13.92851 -13.57086 -13.27687 -13.10831 -12.72553 -12.51218 -12.09956 -11.93139 -11.75918 -11.23470 -11.01365 -10.92841 -10.59816 -9.54051 -8.44231 -6.53003 0.64603 1.27910 1.31718 1.41873 1.52806 1.74255 1.87738 1.92908 2.23650 2.80112 2.92136 3.03171 3.61948 3.79379 3.97684 4.30179 4.52708 4.59647 4.63112 4.72097 4.87760 4.98732 5.10585 5.21465 5.25021 5.29721 5.59286 6.07243 6.45884 6.72215 6.75517 6.97073 7.12037 8.73032 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.030101 B = 0.008758 C = 0.007665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.975086 B = 3196.345569 C = 3652.178753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.222 4.222 3 C 0.024 3.976 4 C -0.124 4.124 5 H 0.162 0.838 6 C 0.106 3.894 7 C -0.072 4.072 8 N -0.269 5.269 9 N -0.464 5.464 10 C 0.248 3.752 11 C -0.550 4.550 12 H 0.022 0.978 13 C 0.016 3.984 14 N -0.939 5.939 15 Si 0.953 3.047 16 H -0.250 1.250 17 H -0.253 1.253 18 H -0.273 1.273 19 C 0.473 3.527 20 O -0.544 6.544 21 H 0.242 0.758 22 H 0.159 0.841 23 H 0.068 0.932 24 H 0.113 0.887 25 H 0.086 0.914 26 H 0.121 0.879 27 H 0.037 0.963 28 H 0.054 0.946 29 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.546 -13.569 13.404 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.222 4.222 3 C -0.013 4.013 4 C -0.148 4.148 5 H 0.179 0.821 6 C -0.087 4.087 7 C -0.130 4.130 8 N -0.075 5.075 9 N -0.281 5.281 10 C 0.127 3.873 11 C -0.589 4.589 12 H 0.041 0.959 13 C -0.183 4.183 14 N -0.578 5.578 15 Si 0.774 3.226 16 H -0.174 1.174 17 H -0.176 1.176 18 H -0.198 1.198 19 C 0.261 3.739 20 O -0.420 6.420 21 H 0.258 0.742 22 H 0.176 0.824 23 H 0.086 0.914 24 H 0.132 0.868 25 H 0.104 0.896 26 H 0.139 0.861 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.725 -13.031 12.221 17.880 hybrid contribution -1.080 0.472 -0.867 1.463 sum -0.354 -12.559 11.354 16.934 Atomic orbital electron populations 1.25622 0.96960 0.99210 0.99587 1.23309 0.95334 1.01982 1.01607 1.18424 0.84850 0.98400 0.99611 1.21834 0.96138 1.04456 0.92362 0.82065 1.26260 0.93064 0.94991 0.94414 1.20668 0.96981 1.03718 0.91619 1.74619 1.15649 1.12932 1.04306 1.49945 1.03220 1.60264 1.14655 1.19377 0.97923 0.93200 0.76801 1.21387 1.52368 0.91103 0.94010 0.95913 1.25878 0.93181 0.95771 1.03438 1.70036 1.50227 1.08178 1.29369 0.85640 0.80261 0.79119 0.77538 1.17410 1.17644 1.19774 1.22156 0.84341 0.77821 0.89590 1.90664 1.23955 1.54048 1.73338 0.74175 0.82362 0.91404 0.86834 0.89553 0.86070 0.94533 0.92793 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.53 19.25 74.32 1.43 -4.10 15 2 C -0.22 -6.68 12.33 31.12 0.38 -6.30 15 3 C 0.02 0.62 5.24 28.79 0.15 0.77 15 4 C -0.12 -3.58 3.04 -11.74 -0.04 -3.62 15 5 H 0.16 3.61 8.14 -2.39 -0.02 3.59 15 6 C 0.11 2.75 6.93 46.83 0.32 3.08 15 7 C -0.07 -0.86 10.49 71.24 0.75 -0.12 15 8 N -0.27 -10.37 12.02 -40.85 -0.49 -10.86 15 9 N -0.46 -21.95 3.52 -465.40 -1.64 -23.59 15 10 C 0.25 13.18 5.06 85.63 0.43 13.62 15 11 C -0.55 -34.45 9.94 25.60 0.25 -34.19 15 12 H 0.02 1.60 8.06 -2.91 -0.02 1.58 15 13 C 0.02 1.00 5.47 84.66 0.46 1.46 15 14 N -0.94 -60.53 13.96 21.45 0.30 -60.23 15 15 Si 0.95 45.04 27.47 68.60 1.88 46.92 15 16 H -0.25 -10.92 7.11 99.48 0.71 -10.21 15 17 H -0.25 -11.37 6.53 99.48 0.65 -10.72 15 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 15 19 C 0.47 21.13 7.57 87.94 0.67 21.80 15 20 O -0.54 -28.44 17.07 -3.09 -0.05 -28.49 15 21 H 0.24 4.86 7.80 -4.43 -0.03 4.82 15 22 H 0.16 2.12 7.58 -2.39 -0.02 2.10 15 23 H 0.07 2.07 8.14 -2.38 -0.02 2.05 15 24 H 0.11 0.85 8.14 -2.39 -0.02 0.83 15 25 H 0.09 1.12 8.14 -2.39 -0.02 1.10 15 26 H 0.12 0.61 7.57 -2.39 -0.02 0.59 15 27 H 0.04 1.99 7.08 -2.39 -0.02 1.97 15 28 H 0.05 2.68 7.58 -2.39 -0.02 2.66 15 29 H 0.27 16.15 8.31 -92.70 -0.77 15.38 15 Total: -1.00 -85.75 266.66 5.90 -79.84 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 1.09 Total: 4.00 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 4.82 Total: -7.60 kcal Atomic # 7 Polarization: -92.85 SS G_CDS: -1.83 Total: -94.68 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.05 Total: -28.49 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal Total: -85.75 5.90 -79.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899346831.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.649 kcal (2) G-P(sol) polarization free energy of solvation -85.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds