Wall clock time and date at job start Mon Mar 30 2020 03:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46794 * 256.82883 * 3 2 1 5 5 C 1.36936 * 120.00125 * 263.91686 * 4 3 2 6 6 H 1.08001 * 120.00521 * 199.38239 * 5 4 3 7 7 C 1.38820 * 120.00033 * 19.37861 * 5 4 3 8 8 N 1.31612 * 119.99653 * 22.29957 * 7 5 4 9 9 Si 1.86798 * 119.99884 * 202.30407 * 7 5 4 10 10 H 1.48493 * 109.47516 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47169 * 120.00198 * 9 7 5 12 12 H 1.48501 * 109.46752 * 239.99312 * 9 7 5 13 13 C 1.46500 * 120.00268 * 83.91853 * 4 3 2 14 14 C 1.50701 * 109.47234 * 89.99730 * 13 4 3 15 15 C 1.34325 * 126.44507 * 90.02587 * 14 13 4 16 16 N 1.34470 * 107.66936 * 179.97438 * 15 14 13 17 17 C 1.30249 * 108.70412 * 359.97438 * 16 15 14 18 18 C 1.50703 * 125.62420 * 179.97438 * 17 16 15 19 19 O 1.33970 * 108.76090 * 0.02562 * 17 16 15 20 20 H 4.40643 * 5.51369 * 179.97438 * 4 1 2 21 21 H 1.08998 * 109.47064 * 136.83099 * 3 2 1 22 22 H 1.08994 * 109.47082 * 16.82509 * 3 2 1 23 23 H 0.97008 * 120.00105 * 180.02562 * 8 7 5 24 24 H 1.08996 * 109.46894 * 329.99629 * 13 4 3 25 25 H 1.09005 * 109.47249 * 209.99757 * 13 4 3 26 26 H 1.08004 * 126.16378 * 359.96024 * 15 14 13 27 27 H 1.08999 * 109.47528 * 270.03312 * 18 17 16 28 28 H 1.08998 * 109.46367 * 30.03015 * 18 17 16 29 29 H 1.08994 * 109.47193 * 150.02673 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.3156 1.3449 5 6 3.4803 1.6015 1.6640 6 1 4.1185 1.7940 2.5137 7 6 3.0109 2.6578 0.8952 8 7 1.9264 2.5088 0.1645 9 14 3.9185 4.2905 0.8978 10 1 5.0980 4.1998 1.7954 11 1 4.3684 4.6089 -0.4811 12 1 3.0100 5.3609 1.3815 13 6 3.2520 -0.7451 2.3485 14 6 4.6246 -1.3622 2.2684 15 6 5.7168 -0.9692 2.9444 16 7 6.7299 -1.7791 2.5894 17 6 6.2877 -2.6465 1.7242 18 6 7.1049 -3.7335 1.0748 19 8 4.9868 -2.4125 1.5058 20 1 -1.0501 0.0001 -0.0002 21 1 3.0090 0.7503 -0.7031 22 1 3.0098 -0.9828 -0.2974 23 1 1.5986 3.2468 -0.3731 24 1 2.4984 -1.5095 2.1594 25 1 3.1006 -0.3236 3.3423 26 1 5.7715 -0.1502 3.6463 27 1 7.5454 -3.3551 0.1524 28 1 7.8976 -4.0469 1.7541 29 1 6.4629 -4.5847 0.8484 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930314511.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:12 Heat of formation + Delta-G solvation = 102.969251 kcal Electronic energy + Delta-G solvation = -14500.309043 eV Core-core repulsion = 12007.024921 eV Total energy + Delta-G solvation = -2493.284122 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.69109 -36.27118 -34.16594 -32.44147 -31.64254 -30.92671 -28.32287 -26.09892 -25.00609 -22.17705 -21.37325 -20.31801 -17.52089 -16.73828 -16.29182 -16.02248 -15.03180 -14.21447 -13.94006 -13.69457 -13.40400 -12.92407 -12.88280 -12.50196 -12.19717 -11.63825 -11.41719 -11.07295 -10.80527 -10.72059 -10.32114 -10.12619 -10.00528 -9.04405 -8.91888 -8.55119 -8.08621 -7.18419 -5.89943 -3.35025 2.03744 3.19215 3.25273 3.33250 3.41442 3.44206 4.11741 4.32028 4.46551 4.51786 5.20816 5.32978 5.47353 5.54799 5.56887 5.64531 5.75734 5.84086 6.01253 6.31465 6.45204 6.62826 6.68038 6.90076 7.09636 7.33190 7.66890 8.13574 8.27598 8.96631 9.11873 9.61733 10.06832 11.13015 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.027007 B = 0.009530 C = 0.007703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.527971 B = 2937.317633 C = 3634.096952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.099 4.099 3 C 0.267 3.733 4 N -0.572 5.572 5 C -0.277 4.277 6 H 0.078 0.922 7 C 0.011 3.989 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.290 1.290 13 C 0.221 3.779 14 C -0.029 4.029 15 C -0.052 4.052 16 N -0.487 5.487 17 C 0.153 3.847 18 C -0.049 4.049 19 O -0.204 6.204 20 H 0.192 0.808 21 H 0.094 0.906 22 H 0.039 0.961 23 H 0.256 0.744 24 H 0.059 0.941 25 H 0.091 0.909 26 H 0.176 0.824 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.538 -9.210 1.105 10.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.102 4.102 3 C 0.142 3.858 4 N -0.290 5.290 5 C -0.405 4.405 6 H 0.095 0.905 7 C -0.189 4.189 8 N -0.523 5.523 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.217 1.217 13 C 0.091 3.909 14 C -0.086 4.086 15 C -0.191 4.191 16 N -0.217 5.217 17 C -0.054 4.054 18 C -0.106 4.106 19 O -0.090 6.090 20 H 0.209 0.791 21 H 0.111 0.889 22 H 0.057 0.943 23 H 0.066 0.934 24 H 0.077 0.923 25 H 0.109 0.891 26 H 0.193 0.807 27 H 0.104 0.896 28 H 0.111 0.889 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.051 -9.055 1.162 10.433 hybrid contribution -0.523 1.237 -0.263 1.368 sum 4.527 -7.819 0.899 9.079 Atomic orbital electron populations 1.24189 0.95317 1.07944 1.03679 1.24077 0.95107 0.93955 0.97030 1.17738 0.83092 0.97417 0.87591 1.44078 1.73583 1.04076 1.07227 1.19211 1.25359 0.81559 1.14415 0.90465 1.24946 0.95895 0.97894 1.00184 1.70156 1.19086 1.31723 1.31328 0.86266 0.79588 0.83541 0.77643 1.20071 1.21398 1.21670 1.19351 0.85711 0.90651 0.95176 1.25788 1.02065 0.87809 0.92950 1.22906 0.88262 1.02366 1.05560 1.70295 1.32283 1.05748 1.13417 1.26051 0.80951 1.00036 0.98313 1.20083 0.97407 0.92755 1.00402 1.84415 1.27154 1.42588 1.54893 0.79077 0.88858 0.94300 0.93362 0.92254 0.89121 0.80650 0.89639 0.88877 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.56 19.25 29.55 0.57 -5.99 15 2 C -0.10 -2.39 11.50 -37.12 -0.43 -2.81 15 3 C 0.27 6.34 5.41 -6.83 -0.04 6.30 15 4 N -0.57 -13.74 2.47 -177.95 -0.44 -14.18 15 5 C -0.28 -7.25 9.63 -15.06 -0.14 -7.39 15 6 H 0.08 1.98 7.92 -52.49 -0.42 1.56 15 7 C 0.01 0.30 4.82 -17.43 -0.08 0.21 15 8 N -0.88 -24.57 9.61 55.49 0.53 -24.04 15 9 Si 0.90 21.23 29.61 -169.99 -5.03 16.20 15 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 13 C 0.22 4.44 6.22 -5.19 -0.03 4.41 15 14 C -0.03 -0.58 6.97 -35.69 -0.25 -0.83 15 15 C -0.05 -1.00 11.80 -17.78 -0.21 -1.21 15 16 N -0.49 -9.22 11.29 -11.10 -0.13 -9.35 15 17 C 0.15 2.59 8.34 -12.95 -0.11 2.48 15 18 C -0.05 -0.53 10.51 36.01 0.38 -0.15 15 19 O -0.20 -3.86 10.78 5.35 0.06 -3.80 15 20 H 0.19 3.57 7.80 -54.09 -0.42 3.14 15 21 H 0.09 2.42 6.59 -51.93 -0.34 2.08 15 22 H 0.04 0.84 8.12 -51.93 -0.42 0.42 15 23 H 0.26 7.00 8.31 -40.82 -0.34 6.66 15 24 H 0.06 1.13 8.07 -51.93 -0.42 0.71 15 25 H 0.09 1.72 8.04 -51.93 -0.42 1.30 15 26 H 0.18 3.10 8.06 -52.48 -0.42 2.68 15 27 H 0.09 0.83 8.14 -51.93 -0.42 0.40 15 28 H 0.09 0.87 8.14 -51.93 -0.42 0.44 15 29 H 0.08 0.73 8.14 -51.93 -0.42 0.30 15 LS Contribution 266.87 15.07 4.02 4.02 Total: -1.00 -30.79 266.87 -4.59 -35.39 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -3.26 Total: 0.74 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -0.34 Total: -4.97 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: -0.03 Total: -47.57 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: 0.06 Total: -3.80 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.79 -4.59 -35.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930314511.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.356 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds