Wall clock time and date at job start Mon Mar 30 2020 03:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46794 * 256.82883 * 3 2 1 5 5 C 1.36936 * 120.00125 * 263.91686 * 4 3 2 6 6 H 1.08001 * 120.00521 * 199.38239 * 5 4 3 7 7 C 1.38820 * 120.00033 * 19.37861 * 5 4 3 8 8 N 1.31612 * 119.99653 * 22.29957 * 7 5 4 9 9 Si 1.86798 * 119.99884 * 202.30407 * 7 5 4 10 10 H 1.48493 * 109.47516 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47169 * 120.00198 * 9 7 5 12 12 H 1.48501 * 109.46752 * 239.99312 * 9 7 5 13 13 C 1.46500 * 120.00268 * 83.91853 * 4 3 2 14 14 C 1.50701 * 109.47234 * 89.99730 * 13 4 3 15 15 C 1.34325 * 126.44507 * 90.02587 * 14 13 4 16 16 N 1.34470 * 107.66936 * 179.97438 * 15 14 13 17 17 C 1.30249 * 108.70412 * 359.97438 * 16 15 14 18 18 C 1.50703 * 125.62420 * 179.97438 * 17 16 15 19 19 O 1.33970 * 108.76090 * 0.02562 * 17 16 15 20 20 H 4.40643 * 5.51369 * 179.97438 * 4 1 2 21 21 H 1.08998 * 109.47064 * 136.83099 * 3 2 1 22 22 H 1.08994 * 109.47082 * 16.82509 * 3 2 1 23 23 H 0.97008 * 120.00105 * 180.02562 * 8 7 5 24 24 H 1.08996 * 109.46894 * 329.99629 * 13 4 3 25 25 H 1.09005 * 109.47249 * 209.99757 * 13 4 3 26 26 H 1.08004 * 126.16378 * 359.96024 * 15 14 13 27 27 H 1.08999 * 109.47528 * 270.03312 * 18 17 16 28 28 H 1.08998 * 109.46367 * 30.03015 * 18 17 16 29 29 H 1.08994 * 109.47193 * 150.02673 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.3156 1.3449 5 6 3.4803 1.6015 1.6640 6 1 4.1185 1.7940 2.5137 7 6 3.0109 2.6578 0.8952 8 7 1.9264 2.5088 0.1645 9 14 3.9185 4.2905 0.8978 10 1 5.0980 4.1998 1.7954 11 1 4.3684 4.6089 -0.4811 12 1 3.0100 5.3609 1.3815 13 6 3.2520 -0.7451 2.3485 14 6 4.6246 -1.3622 2.2684 15 6 5.7168 -0.9692 2.9444 16 7 6.7299 -1.7791 2.5894 17 6 6.2877 -2.6465 1.7242 18 6 7.1049 -3.7335 1.0748 19 8 4.9868 -2.4125 1.5058 20 1 -1.0501 0.0001 -0.0002 21 1 3.0090 0.7503 -0.7031 22 1 3.0098 -0.9828 -0.2974 23 1 1.5986 3.2468 -0.3731 24 1 2.4984 -1.5095 2.1594 25 1 3.1006 -0.3236 3.3423 26 1 5.7715 -0.1502 3.6463 27 1 7.5454 -3.3551 0.1524 28 1 7.8976 -4.0469 1.7541 29 1 6.4629 -4.5847 0.8484 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930314511.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:12 Heat of formation + Delta-G solvation = 82.753697 kcal Electronic energy + Delta-G solvation = -14501.185655 eV Core-core repulsion = 12007.024921 eV Total energy + Delta-G solvation = -2494.160734 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.11776 -38.07892 -35.59927 -34.03507 -33.51266 -32.38246 -29.80056 -27.98018 -26.55515 -23.87642 -22.86660 -21.78660 -19.37755 -18.42770 -17.74589 -17.57183 -16.87091 -15.79118 -15.60728 -15.47546 -14.81119 -14.56529 -13.91235 -13.78230 -13.50117 -13.30399 -13.17321 -12.83295 -12.60862 -12.27035 -12.14807 -12.00870 -11.48830 -10.85798 -10.83490 -10.40389 -9.56347 -9.08091 -7.90015 -5.35869 0.61413 1.44115 1.49137 1.57831 1.78193 1.89853 2.32020 2.48946 2.56194 3.22181 3.32108 3.76633 4.00944 4.08422 4.26633 4.30572 4.68739 4.69300 4.77799 4.81736 4.88497 5.12140 5.17205 5.20882 5.54718 5.59286 5.63944 6.19573 6.85694 7.00426 7.32018 7.69405 8.13019 9.11257 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.027007 B = 0.009530 C = 0.007703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.527971 B = 2937.317633 C = 3634.096952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.139 4.139 3 C 0.272 3.728 4 N -0.587 5.587 5 C -0.278 4.278 6 H 0.078 0.922 7 C -0.036 4.036 8 N -0.906 5.906 9 Si 0.958 3.042 10 H -0.270 1.270 11 H -0.293 1.293 12 H -0.293 1.293 13 C 0.225 3.775 14 C -0.048 4.048 15 C -0.056 4.056 16 N -0.515 5.515 17 C 0.167 3.833 18 C -0.050 4.050 19 O -0.215 6.215 20 H 0.226 0.774 21 H 0.065 0.935 22 H 0.055 0.945 23 H 0.249 0.751 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.184 0.816 27 H 0.102 0.898 28 H 0.112 0.888 29 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.186 -10.251 1.243 11.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.142 4.142 3 C 0.147 3.853 4 N -0.305 5.305 5 C -0.407 4.407 6 H 0.096 0.904 7 C -0.233 4.233 8 N -0.550 5.550 9 Si 0.787 3.213 10 H -0.194 1.194 11 H -0.219 1.219 12 H -0.220 1.220 13 C 0.098 3.902 14 C -0.104 4.104 15 C -0.194 4.194 16 N -0.246 5.246 17 C -0.040 4.040 18 C -0.107 4.107 19 O -0.102 6.102 20 H 0.242 0.758 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.086 0.914 25 H 0.116 0.884 26 H 0.201 0.799 27 H 0.121 0.879 28 H 0.130 0.870 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.719 -10.114 1.329 11.695 hybrid contribution -0.675 1.422 -0.293 1.601 sum 5.044 -8.692 1.037 10.103 Atomic orbital electron populations 1.25027 0.96305 1.06310 1.02089 1.24370 0.95827 0.95458 0.98558 1.17569 0.83394 0.97142 0.87157 1.44207 1.74033 1.04294 1.08012 1.19456 1.24551 0.82676 1.14045 0.90375 1.25566 0.96627 1.00537 1.00598 1.70291 1.20305 1.32047 1.32342 0.85368 0.78544 0.80284 0.77135 1.19425 1.21949 1.22036 1.19364 0.86336 0.89929 0.94612 1.25344 1.01753 0.88989 0.94316 1.23119 0.88399 1.02466 1.05443 1.70345 1.32412 1.06823 1.15005 1.27340 0.80297 0.99775 0.96622 1.20465 0.97525 0.91697 1.01023 1.84404 1.28314 1.42500 1.54994 0.75767 0.91733 0.92728 0.94125 0.91423 0.88358 0.79938 0.87917 0.86972 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -12.15 19.25 74.32 1.43 -10.71 15 2 C -0.14 -6.69 11.50 31.13 0.36 -6.33 15 3 C 0.27 13.06 5.41 84.58 0.46 13.52 15 4 N -0.59 -28.19 2.47 -716.90 -1.77 -29.96 15 5 C -0.28 -14.56 9.63 84.04 0.81 -13.75 15 6 H 0.08 3.98 7.92 -2.91 -0.02 3.96 15 7 C -0.04 -1.93 4.82 84.87 0.41 -1.52 15 8 N -0.91 -51.07 9.61 21.65 0.21 -50.86 15 9 Si 0.96 44.00 29.61 68.60 2.03 46.03 15 10 H -0.27 -11.96 7.11 99.48 0.71 -11.26 15 11 H -0.29 -13.56 7.11 99.48 0.71 -12.85 15 12 H -0.29 -13.52 7.11 99.48 0.71 -12.81 15 13 C 0.23 8.97 6.22 85.63 0.53 9.50 15 14 C -0.05 -1.85 6.97 24.79 0.17 -1.67 15 15 C -0.06 -2.12 11.80 83.39 0.98 -1.13 15 16 N -0.52 -18.78 11.29 -303.84 -3.43 -22.21 15 17 C 0.17 5.28 8.34 88.34 0.74 6.02 15 18 C -0.05 -0.92 10.51 71.24 0.75 -0.17 15 19 O -0.21 -7.81 10.78 -3.76 -0.04 -7.85 15 20 H 0.23 7.80 7.80 -4.41 -0.03 7.76 15 21 H 0.06 3.43 6.59 -2.39 -0.02 3.42 15 22 H 0.05 2.37 8.12 -2.39 -0.02 2.35 15 23 H 0.25 13.82 8.31 -92.70 -0.77 13.05 15 24 H 0.07 2.54 8.07 -2.39 -0.02 2.52 15 25 H 0.10 3.68 8.04 -2.38 -0.02 3.66 15 26 H 0.18 6.37 8.06 -2.91 -0.02 6.35 15 27 H 0.10 1.61 8.14 -2.39 -0.02 1.60 15 28 H 0.11 1.67 8.14 -2.39 -0.02 1.65 15 29 H 0.11 1.47 8.14 -2.39 -0.02 1.45 15 Total: -1.00 -65.02 266.87 4.77 -60.25 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 1.14 Total: 10.84 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 6.64 Total: -6.24 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -4.99 Total: -103.04 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: -0.04 Total: -7.85 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -65.02 4.77 -60.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930314511.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.003 kcal (2) G-P(sol) polarization free energy of solvation -65.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds