Wall clock time and date at job start Mon Mar 30 2020 03:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38669 * 120.74580 * 2 1 4 4 C 1.38547 * 119.36638 * 179.97438 * 3 2 1 5 5 N 1.31530 * 120.91528 * 359.97438 * 4 3 2 6 6 C 1.32788 * 121.62702 * 359.76968 * 5 4 3 7 7 C 1.48003 * 119.73556 * 180.24424 * 6 5 4 8 8 O 1.21562 * 120.00531 * 186.01845 * 7 6 5 9 9 N 1.34782 * 119.99531 * 6.02144 * 7 6 5 10 10 C 1.36786 * 119.99824 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00243 * 359.97438 * 10 9 7 12 12 C 1.39105 * 119.99906 * 179.97438 * 10 9 7 13 13 N 1.31322 * 120.00206 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00279 * 359.97438 * 12 10 9 15 15 H 1.48494 * 109.47575 * 89.99587 * 14 12 10 16 16 H 1.48497 * 109.47301 * 210.00376 * 14 12 10 17 17 H 1.48510 * 109.46988 * 329.99725 * 14 12 10 18 18 C 1.38538 * 120.75508 * 179.97438 * 2 1 3 19 19 C 1.50701 * 120.47202 * 0.02562 * 18 2 1 20 20 H 1.09001 * 109.47375 * 270.02292 * 1 2 3 21 21 H 1.08993 * 109.47226 * 30.02513 * 1 2 3 22 22 H 1.09005 * 109.46630 * 150.02904 * 1 2 3 23 23 H 1.07993 * 120.31802 * 359.97438 * 3 2 1 24 24 H 1.08000 * 119.54418 * 179.97438 * 4 3 2 25 25 H 0.96995 * 120.00391 * 359.97438 * 9 7 6 26 26 H 0.97001 * 120.00627 * 179.97438 * 13 12 10 27 27 H 1.08996 * 109.47736 * 96.66255 * 19 18 2 28 28 H 1.09003 * 109.46759 * 216.66692 * 19 18 2 29 29 H 1.09002 * 109.46698 * 336.66211 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2159 1.1918 0.0000 4 6 3.6010 1.1584 0.0005 5 7 4.2494 0.0141 0.0016 6 6 3.6089 -1.1491 0.0066 7 6 4.3807 -2.4120 0.0131 8 8 3.8044 -3.4772 -0.0926 9 7 5.7225 -2.3811 0.1362 10 6 6.4358 -3.5482 0.1416 11 1 5.9239 -4.4945 0.0477 12 6 7.8207 -3.5163 0.2682 13 7 8.5056 -4.6368 0.2739 14 14 8.7064 -1.8797 0.4300 15 1 8.8155 -1.5155 1.8654 16 1 10.0659 -1.9923 -0.1568 17 1 7.9420 -0.8298 -0.2903 18 6 2.2155 -1.1905 0.0005 19 6 1.4901 -2.5115 0.0005 20 1 -0.3634 0.0004 1.0277 21 1 -0.3633 0.8897 -0.5142 22 1 -0.3633 -0.8903 -0.5134 23 1 1.6934 2.1369 -0.0004 24 1 4.1560 2.0849 0.0001 25 1 6.1824 -1.5313 0.2202 26 1 9.4714 -4.6146 0.3617 27 1 1.4200 -2.8877 -1.0201 28 1 2.0376 -3.2266 0.6146 29 1 0.4879 -2.3756 0.4073 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953047107.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:00 Heat of formation + Delta-G solvation = -27.680319 kcal Electronic energy + Delta-G solvation = -14456.645911 eV Core-core repulsion = 11957.696399 eV Total energy + Delta-G solvation = -2498.949512 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.64485 -39.69226 -36.38196 -35.40821 -33.81931 -33.14415 -29.26137 -28.31300 -27.00379 -24.36582 -22.60074 -21.31269 -20.50733 -18.37597 -17.46036 -16.96014 -16.33846 -16.21907 -15.79071 -15.13681 -14.86188 -14.56434 -14.24201 -13.76150 -13.66644 -13.59195 -13.50839 -13.07817 -12.89660 -12.50391 -12.37294 -12.04387 -11.61387 -10.80350 -10.36688 -10.32126 -10.14961 -9.88042 -8.54637 -6.09255 -0.22324 0.29796 1.27105 1.28836 1.39617 1.90314 2.14293 2.71671 2.81498 3.18848 3.41541 3.83290 3.90632 4.01774 4.02932 4.53906 4.58238 4.72227 4.81350 4.83323 4.85559 5.06079 5.23066 5.30007 5.44488 5.48566 5.77565 5.90832 6.43488 6.71435 6.92214 7.28501 7.81042 8.61422 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.042752 B = 0.008408 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.787461 B = 3329.345437 C = 3959.196962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.054 4.054 3 C -0.146 4.146 4 C 0.085 3.915 5 N -0.502 5.502 6 C 0.067 3.933 7 C 0.481 3.519 8 O -0.604 6.604 9 N -0.560 5.560 10 C -0.332 4.332 11 H 0.069 0.931 12 C -0.001 4.001 13 N -0.912 5.912 14 Si 0.953 3.047 15 H -0.254 1.254 16 H -0.261 1.261 17 H -0.245 1.245 18 C -0.100 4.100 19 C -0.108 4.108 20 H 0.091 0.909 21 H 0.098 0.902 22 H 0.074 0.926 23 H 0.183 0.817 24 H 0.193 0.807 25 H 0.392 0.608 26 H 0.285 0.715 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.137 16.992 0.257 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.062 4.062 3 C -0.165 4.165 4 C -0.075 4.075 5 N -0.215 5.215 6 C -0.069 4.069 7 C 0.269 3.731 8 O -0.491 6.491 9 N -0.198 5.198 10 C -0.462 4.462 11 H 0.087 0.913 12 C -0.203 4.203 13 N -0.551 5.551 14 Si 0.773 3.227 15 H -0.178 1.178 16 H -0.185 1.185 17 H -0.169 1.169 18 C -0.104 4.104 19 C -0.164 4.164 20 H 0.110 0.890 21 H 0.117 0.883 22 H 0.093 0.907 23 H 0.201 0.799 24 H 0.210 0.790 25 H 0.229 0.771 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.360 16.103 0.198 20.300 hybrid contribution 0.338 0.074 0.032 0.348 sum -12.022 16.177 0.230 20.156 Atomic orbital electron populations 1.20929 0.87019 1.04726 1.04162 1.20669 0.98872 0.91168 0.95447 1.22625 0.94868 0.99808 0.99220 1.23417 0.93254 0.95605 0.95203 1.67536 1.42488 0.98747 1.12703 1.20930 0.92141 0.91462 1.02370 1.18097 0.82293 0.88381 0.84319 1.90552 1.69326 1.32095 1.57078 1.41969 1.06226 1.08317 1.63248 1.19163 0.90655 0.86513 1.49819 0.91334 1.26039 0.96291 1.02428 0.95536 1.69715 1.08807 1.28923 1.47682 0.85517 0.78956 0.77855 0.80372 1.17810 1.18486 1.16893 1.20934 0.92515 0.98249 0.98669 1.20906 0.99718 0.93035 1.02761 0.89046 0.88316 0.90673 0.79938 0.79028 0.77126 0.90496 0.91803 0.91645 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.28 71.24 0.66 -0.97 15 2 C -0.05 -1.28 5.91 -19.69 -0.12 -1.40 15 3 C -0.15 -2.89 9.82 22.45 0.22 -2.67 15 4 C 0.08 2.15 11.18 84.81 0.95 3.09 15 5 N -0.50 -18.58 9.56 -184.95 -1.77 -20.35 15 6 C 0.07 2.83 6.75 41.87 0.28 3.11 15 7 C 0.48 25.40 7.70 86.83 0.67 26.07 15 8 O -0.60 -35.13 12.88 -3.91 -0.05 -35.18 15 9 N -0.56 -30.53 5.07 -309.51 -1.57 -32.10 15 10 C -0.33 -20.57 10.16 84.13 0.85 -19.71 15 11 H 0.07 4.87 7.38 -2.91 -0.02 4.85 15 12 C 0.00 -0.08 5.50 84.98 0.47 0.39 15 13 N -0.91 -55.34 13.95 21.69 0.30 -55.04 15 14 Si 0.95 41.85 27.74 68.60 1.90 43.75 15 15 H -0.25 -10.56 7.11 99.48 0.71 -9.85 15 16 H -0.26 -10.82 7.11 99.48 0.71 -10.11 15 17 H -0.24 -10.07 6.52 99.48 0.65 -9.42 15 18 C -0.10 -3.44 5.93 -19.51 -0.12 -3.55 15 19 C -0.11 -3.64 8.17 71.24 0.58 -3.05 15 20 H 0.09 1.10 8.14 -2.39 -0.02 1.08 15 21 H 0.10 0.91 8.10 -2.39 -0.02 0.89 15 22 H 0.07 1.13 6.68 -2.38 -0.02 1.11 15 23 H 0.18 1.81 8.06 -2.91 -0.02 1.78 15 24 H 0.19 3.23 8.06 -2.91 -0.02 3.21 15 25 H 0.39 19.40 5.10 -92.71 -0.47 18.92 15 26 H 0.29 15.65 8.31 -92.71 -0.77 14.88 15 27 H 0.06 2.22 8.14 -2.39 -0.02 2.20 15 28 H 0.06 2.75 5.83 -2.39 -0.01 2.74 15 29 H 0.09 2.25 6.45 -2.39 -0.02 2.23 15 Total: -1.00 -77.01 250.57 3.92 -73.10 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.65 Total: 24.51 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 4.45 Total: 1.30 kcal Atomic # 7 Polarization: -104.45 SS G_CDS: -3.03 Total: -107.48 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.05 Total: -35.18 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.90 Total: 43.75 kcal Total: -77.01 3.92 -73.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953047107.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.416 kcal (2) G-P(sol) polarization free energy of solvation -77.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds