Wall clock time and date at job start Mon Mar 30 2020 02:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47199 * 286.12972 * 3 2 1 5 5 C 1.37101 * 119.99650 * 263.87352 * 4 3 2 6 6 H 1.07996 * 119.99709 * 200.29563 * 5 4 3 7 7 C 1.38953 * 120.00134 * 20.29502 * 5 4 3 8 8 N 1.31407 * 120.00128 * 21.38631 * 7 5 4 9 9 Si 1.86799 * 119.99624 * 201.38977 * 7 5 4 10 10 H 1.48500 * 109.47432 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47180 * 120.00040 * 9 7 5 12 12 H 1.48500 * 109.47012 * 239.99784 * 9 7 5 13 13 C 1.34774 * 120.00126 * 83.86543 * 4 3 2 14 14 O 1.21294 * 119.99493 * 180.02562 * 13 4 3 15 15 C 1.50696 * 119.99901 * 0.02562 * 13 4 3 16 16 H 1.08999 * 115.56675 * 34.29335 * 15 13 4 17 17 C 1.53006 * 117.49661 * 248.60488 * 15 13 4 18 18 C 1.52998 * 60.02976 * 252.52414 * 17 15 13 19 19 C 1.52995 * 138.58710 * 229.10073 * 18 17 15 20 20 C 1.52996 * 138.59218 * 130.88570 * 18 17 15 21 21 H 1.08998 * 109.47132 * 166.13219 * 3 2 1 22 22 H 1.09001 * 109.47502 * 46.12842 * 3 2 1 23 23 H 0.96999 * 119.99684 * 180.02562 * 8 7 5 24 24 H 1.08999 * 117.49869 * 145.02330 * 17 15 13 25 25 H 1.08997 * 117.49697 * 0.02562 * 17 15 13 26 26 H 1.09000 * 117.49878 * 336.59217 * 19 18 17 27 27 H 1.09004 * 117.50342 * 121.61543 * 19 18 17 28 28 H 1.09004 * 117.49637 * 238.38368 * 20 18 17 29 29 H 1.08997 * 117.49706 * 23.37123 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0965 -0.3829 1.3269 5 6 3.4441 0.5836 2.2351 6 1 4.0945 0.3389 3.0618 7 6 2.9595 1.8780 2.0919 8 7 1.8763 2.0993 1.3815 9 14 3.8479 3.3036 2.9092 10 1 5.0312 2.7921 3.6464 11 1 4.2900 4.2709 1.8727 12 1 2.9286 3.9809 3.8585 13 6 3.2042 -1.6857 1.6548 14 8 3.6082 -2.0030 2.7535 15 6 2.8225 -2.7479 0.6563 16 1 3.0291 -2.5089 -0.3869 17 6 1.5769 -3.5843 0.9561 18 6 2.9672 -4.2090 1.0891 19 6 3.7056 -5.4714 0.6397 20 6 3.7632 -5.0318 2.1040 21 1 2.9709 0.9985 -0.2463 22 1 2.9717 -0.7114 -0.7408 23 1 1.5383 3.0030 1.2813 24 1 0.9641 -3.8956 0.1101 25 1 1.0333 -3.3659 1.8753 26 1 3.1039 -6.3483 0.4007 27 1 4.6060 -5.3410 0.0393 28 1 4.7014 -4.6121 2.4670 29 1 3.1994 -5.6191 2.8287 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292649713.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:04 Heat of formation + Delta-G solvation = 65.819605 kcal Electronic energy + Delta-G solvation = -14640.695947 eV Core-core repulsion = 12145.800895 eV Total energy + Delta-G solvation = -2494.895051 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.21003 -37.14907 -35.57766 -34.22823 -32.31679 -31.58151 -27.45670 -25.43245 -22.81520 -22.10402 -19.78864 -18.24450 -17.74000 -16.51004 -16.26997 -14.81909 -14.71465 -14.64136 -14.00118 -13.36774 -13.27843 -12.92711 -12.00500 -11.91012 -11.61513 -11.35005 -11.20297 -11.19168 -11.12806 -10.55859 -10.38863 -10.31045 -9.77497 -9.67496 -9.57239 -9.22365 -8.51149 -7.99924 -6.49036 -3.99363 3.08029 3.22736 3.28792 3.45920 3.67334 3.98147 4.02992 4.16528 4.25740 4.65346 4.89511 4.92219 5.14668 5.24237 5.45103 5.65334 5.79035 5.85684 5.94980 6.00279 6.04400 6.19029 6.21587 6.40208 6.46960 6.50464 7.48214 7.95270 8.30869 8.80198 9.02521 9.21876 9.78886 10.57343 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.035486 B = 0.009394 C = 0.007851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.856827 B = 2979.900086 C = 3565.634732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.248 3.752 3 C 0.223 3.777 4 N -0.442 5.442 5 C -0.313 4.313 6 H 0.107 0.893 7 C 0.032 3.968 8 N -0.876 5.876 9 Si 0.926 3.074 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.283 1.283 13 C 0.485 3.515 14 O -0.566 6.566 15 C -0.128 4.128 16 H 0.114 0.886 17 C -0.104 4.104 18 C -0.200 4.200 19 C -0.136 4.136 20 C -0.113 4.113 21 H 0.123 0.877 22 H 0.084 0.916 23 H 0.272 0.728 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 -7.234 -5.181 9.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.153 5.153 2 C -0.071 4.071 3 C 0.095 3.905 4 N -0.162 5.162 5 C -0.440 4.440 6 H 0.125 0.875 7 C -0.172 4.172 8 N -0.514 5.514 9 Si 0.752 3.248 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.209 1.209 13 C 0.273 3.727 14 O -0.448 6.448 15 C -0.149 4.149 16 H 0.132 0.868 17 C -0.142 4.142 18 C -0.201 4.201 19 C -0.173 4.173 20 C -0.150 4.150 21 H 0.140 0.860 22 H 0.102 0.898 23 H 0.083 0.917 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.303 -7.195 -4.658 8.875 hybrid contribution 0.561 1.079 0.293 1.251 sum 2.864 -6.116 -4.365 8.041 Atomic orbital electron populations 1.80870 1.13580 1.11640 1.09175 1.29236 0.95318 0.90576 0.91943 1.18677 0.81782 1.03461 0.86531 1.43570 1.56711 1.04420 1.11464 1.19731 1.27759 0.87548 1.08987 0.87508 1.25293 0.94840 0.99316 0.97735 1.69861 1.18088 1.22424 1.41046 0.85871 0.79609 0.80425 0.78875 1.19104 1.20463 1.20916 1.19280 0.83437 0.82516 0.87473 1.90532 1.49891 1.81120 1.23216 1.22070 1.03228 0.90132 0.99512 0.86839 1.22572 0.88850 0.99892 1.02848 1.21113 0.99760 0.91936 1.07297 1.22703 1.00971 0.95218 0.98418 1.22490 1.01134 1.00079 0.91301 0.85970 0.89809 0.91719 0.88474 0.88541 0.88975 0.88891 0.88303 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.29 18.54 42.15 0.78 -10.50 15 2 C 0.25 5.51 13.34 -20.76 -0.28 5.23 15 3 C 0.22 4.46 4.91 -6.83 -0.03 4.43 15 4 N -0.44 -10.45 2.60 -117.93 -0.31 -10.76 15 5 C -0.31 -8.14 9.27 -14.93 -0.14 -8.28 15 6 H 0.11 2.94 7.43 -52.49 -0.39 2.55 15 7 C 0.03 0.79 4.84 -17.47 -0.08 0.71 15 8 N -0.88 -22.35 9.59 55.50 0.53 -21.82 15 9 Si 0.93 19.71 29.60 -169.99 -5.03 14.68 15 10 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 13 C 0.48 11.27 7.34 -10.99 -0.08 11.19 15 14 O -0.57 -15.06 15.92 5.55 0.09 -14.98 15 15 C -0.13 -2.35 5.17 -91.73 -0.47 -2.82 15 16 H 0.11 1.76 6.53 -51.93 -0.34 1.42 15 17 C -0.10 -1.77 10.23 -26.73 -0.27 -2.05 15 18 C -0.20 -3.33 5.06 -154.48 -0.78 -4.11 15 19 C -0.14 -1.77 10.53 -26.73 -0.28 -2.05 15 20 C -0.11 -1.74 10.16 -26.73 -0.27 -2.02 15 21 H 0.12 2.47 6.63 -51.93 -0.34 2.13 15 22 H 0.08 1.29 6.27 -51.93 -0.33 0.96 15 23 H 0.27 6.72 8.31 -40.82 -0.34 6.38 15 24 H 0.10 1.40 8.14 -51.93 -0.42 0.98 15 25 H 0.10 1.81 8.14 -51.93 -0.42 1.39 15 26 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 27 H 0.09 1.10 8.14 -51.93 -0.42 0.67 15 28 H 0.10 1.62 8.14 -51.93 -0.42 1.20 15 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 LS Contribution 262.45 15.07 3.96 3.96 Total: -1.00 -30.74 262.45 -5.75 -36.48 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -3.07 Total: 2.70 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -2.70 Total: 0.24 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: 1.01 Total: -43.08 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: 0.09 Total: -14.98 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.74 -5.75 -36.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292649713.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.303 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds