Wall clock time and date at job start Mon Mar 30 2020 02:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00020 * 2 1 4 4 C 1.50706 * 109.46949 * 89.99910 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47353 * 89.99430 * 8 6 4 10 10 H 1.48494 * 109.47031 * 209.99977 * 8 6 4 11 11 H 1.48504 * 109.46680 * 329.99678 * 8 6 4 12 12 C 1.38327 * 120.00135 * 179.97438 * 2 1 3 13 13 C 1.39479 * 119.51081 * 184.73179 * 12 2 1 14 14 C 1.36753 * 119.41179 * 179.78963 * 13 12 2 15 15 C 1.40654 * 118.46610 * 0.47630 * 14 13 12 16 16 C 1.46782 * 120.50419 * 179.77156 * 15 14 13 17 17 O 1.21297 * 120.00211 * 179.97438 * 16 15 14 18 18 C 1.39889 * 118.99424 * 359.74161 * 15 14 13 19 19 N 1.31594 * 120.47518 * 0.02865 * 18 15 14 20 20 H 1.09001 * 109.47412 * 89.99916 * 1 2 3 21 21 H 1.09000 * 109.47567 * 210.00198 * 1 2 3 22 22 H 1.09002 * 109.47279 * 329.99646 * 1 2 3 23 23 H 1.09000 * 109.47175 * 329.99936 * 3 2 1 24 24 H 1.09001 * 109.47297 * 209.99443 * 3 2 1 25 25 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 26 26 H 1.07996 * 120.29458 * 0.02562 * 13 12 2 27 27 H 1.07999 * 120.76685 * 180.21580 * 14 13 12 28 28 H 1.08002 * 119.99820 * 359.97103 * 16 15 14 29 29 H 1.07998 * 119.76095 * 180.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0938 1.0983 2.2417 6 6 3.1268 2.8775 1.6727 7 7 3.3456 3.2573 2.9127 8 14 3.7338 3.9287 0.2530 9 1 2.6824 4.9077 -0.1230 10 1 4.9620 4.6549 0.6645 11 1 4.0396 3.0591 -0.9114 12 6 2.1566 -1.1979 0.0005 13 6 3.5478 -1.1880 0.1007 14 6 4.2292 -2.3737 0.1054 15 6 3.4956 -3.5689 -0.0021 16 6 4.1819 -4.8664 -0.0067 17 8 3.5403 -5.8916 -0.0993 18 6 2.1020 -3.5024 -0.1038 19 7 1.4873 -2.3389 -0.0996 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 1.6084 2.0284 -0.5138 24 1 3.1499 1.1384 -0.5137 25 1 3.8224 4.0833 3.0899 26 1 4.0817 -0.2525 0.1777 27 1 5.3061 -2.3916 0.1854 28 1 5.2582 -4.9083 0.0723 29 1 1.5265 -4.4126 -0.1865 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087717451.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:17 Heat of formation + Delta-G solvation = 11.857310 kcal Electronic energy + Delta-G solvation = -14234.407813 eV Core-core repulsion = 11737.172781 eV Total energy + Delta-G solvation = -2497.235032 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.03074 -38.35786 -36.08451 -32.88052 -32.20219 -30.22760 -28.70005 -25.97665 -24.30919 -22.50672 -21.78461 -20.25271 -17.16610 -17.04956 -16.60156 -15.85297 -14.79598 -14.67688 -14.33688 -14.16706 -13.80180 -13.52750 -12.87008 -12.60988 -12.51738 -12.06056 -11.81275 -11.62105 -11.07967 -10.75389 -10.41467 -9.81597 -9.73480 -9.57814 -9.21415 -8.91633 -8.81055 -6.98851 -6.29593 -4.32394 1.08182 1.81312 2.83719 3.10924 3.18363 3.20116 3.56564 4.18327 4.35635 4.58674 4.88615 5.01643 5.15144 5.45349 5.46814 5.77818 5.87201 5.96073 6.16792 6.25607 6.33393 6.43398 6.49944 6.64994 6.95615 7.31025 7.43612 7.69628 7.94695 8.24145 8.54059 8.76780 9.27976 10.82965 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.039331 B = 0.007335 C = 0.006710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.743616 B = 3816.366339 C = 4171.851737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.569 5.569 3 C 0.217 3.783 4 C -0.544 4.544 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.888 5.888 8 Si 0.872 3.128 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.264 1.264 12 C 0.442 3.558 13 C -0.237 4.237 14 C 0.007 3.993 15 C -0.341 4.341 16 C 0.398 3.602 17 O -0.491 6.491 18 C 0.216 3.784 19 N -0.568 5.568 20 H 0.043 0.957 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.034 0.966 24 H 0.037 0.963 25 H 0.268 0.732 26 H 0.147 0.853 27 H 0.133 0.867 28 H 0.092 0.908 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.199 -7.212 -6.945 10.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.273 5.273 3 C 0.096 3.904 4 C -0.582 4.582 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.525 5.525 8 Si 0.699 3.301 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.189 1.189 12 C 0.203 3.797 13 C -0.262 4.262 14 C -0.018 4.018 15 C -0.349 4.349 16 C 0.259 3.741 17 O -0.367 6.367 18 C 0.053 3.947 19 N -0.287 5.287 20 H 0.062 0.938 21 H 0.089 0.911 22 H 0.090 0.910 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.164 0.836 27 H 0.151 0.849 28 H 0.109 0.891 29 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.086 -7.250 -6.938 10.036 hybrid contribution 1.307 0.941 -0.394 1.658 sum 1.221 -6.309 -7.333 9.750 Atomic orbital electron populations 1.21557 0.79519 1.02946 1.00535 1.46779 1.06005 1.03467 1.71055 1.19899 0.92182 0.79736 0.98616 1.21362 1.37801 1.07952 0.91077 0.90340 1.24878 0.95173 0.97082 0.95598 1.69889 1.40570 1.23382 1.18699 0.86910 0.79157 0.81197 0.82856 1.19844 1.20703 1.18861 1.18710 0.88711 0.86197 0.86061 1.21345 0.93604 1.00243 1.10994 1.21160 0.99659 0.90934 0.90032 1.21284 0.96262 0.96238 1.21088 1.23553 0.94280 0.86471 0.69768 1.90479 1.71114 1.37237 1.37857 1.22664 0.90967 0.94491 0.86540 1.67328 1.40067 0.97449 1.23859 0.93828 0.91071 0.91047 0.94799 0.94510 0.92229 0.83579 0.84884 0.89141 0.82634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.69 10.41 59.84 0.62 2.31 15 2 N -0.57 -11.47 2.95 -183.14 -0.54 -12.02 15 3 C 0.22 4.72 3.85 -5.19 -0.02 4.70 15 4 C -0.54 -14.15 9.88 -34.44 -0.34 -14.49 15 5 H 0.08 2.32 8.06 -52.49 -0.42 1.89 15 6 C 0.08 2.04 5.47 -17.82 -0.10 1.94 15 7 N -0.89 -25.49 13.96 55.43 0.77 -24.72 15 8 Si 0.87 19.35 27.47 -169.99 -4.67 14.68 15 9 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 11 H -0.26 -5.51 6.54 56.52 0.37 -5.14 15 12 C 0.44 8.66 7.36 -155.33 -1.14 7.52 15 13 C -0.24 -4.30 9.11 -39.66 -0.36 -4.66 15 14 C 0.01 0.11 9.88 -39.21 -0.39 -0.28 15 15 C -0.34 -5.09 5.89 -104.91 -0.62 -5.71 15 16 C 0.40 5.15 11.46 34.18 0.39 5.54 15 17 O -0.49 -7.91 17.18 5.54 0.10 -7.82 15 18 C 0.22 3.55 10.77 -17.04 -0.18 3.36 15 19 N -0.57 -10.54 9.12 -12.07 -0.11 -10.65 15 20 H 0.04 0.67 8.14 -51.93 -0.42 0.24 15 21 H 0.07 1.21 7.43 -51.93 -0.39 0.82 15 22 H 0.07 1.21 8.07 -51.93 -0.42 0.80 15 23 H 0.03 0.71 7.50 -51.93 -0.39 0.32 15 24 H 0.04 0.79 5.40 -51.93 -0.28 0.51 15 25 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 26 H 0.15 2.77 6.16 -52.49 -0.32 2.45 15 27 H 0.13 1.47 8.06 -52.49 -0.42 1.05 15 28 H 0.09 0.82 8.06 -52.49 -0.42 0.40 15 29 H 0.16 2.31 7.65 -52.49 -0.40 1.91 15 LS Contribution 258.34 15.07 3.89 3.89 Total: -1.00 -30.02 258.34 -5.75 -35.77 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -3.06 Total: 0.63 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.14 Total: 0.23 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.12 Total: -47.38 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.10 Total: -7.82 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.67 Total: 14.68 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.02 -5.75 -35.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087717451.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.625 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds