Wall clock time and date at job start Mon Mar 30 2020 02:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00020 * 2 1 4 4 C 1.50706 * 109.46949 * 89.99910 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47353 * 89.99430 * 8 6 4 10 10 H 1.48494 * 109.47031 * 209.99977 * 8 6 4 11 11 H 1.48504 * 109.46680 * 329.99678 * 8 6 4 12 12 C 1.38327 * 120.00135 * 179.97438 * 2 1 3 13 13 C 1.39479 * 119.51081 * 184.73179 * 12 2 1 14 14 C 1.36753 * 119.41179 * 179.78963 * 13 12 2 15 15 C 1.40654 * 118.46610 * 0.47630 * 14 13 12 16 16 C 1.46782 * 120.50419 * 179.77156 * 15 14 13 17 17 O 1.21297 * 120.00211 * 179.97438 * 16 15 14 18 18 C 1.39889 * 118.99424 * 359.74161 * 15 14 13 19 19 N 1.31594 * 120.47518 * 0.02865 * 18 15 14 20 20 H 1.09001 * 109.47412 * 89.99916 * 1 2 3 21 21 H 1.09000 * 109.47567 * 210.00198 * 1 2 3 22 22 H 1.09002 * 109.47279 * 329.99646 * 1 2 3 23 23 H 1.09000 * 109.47175 * 329.99936 * 3 2 1 24 24 H 1.09001 * 109.47297 * 209.99443 * 3 2 1 25 25 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 26 26 H 1.07996 * 120.29458 * 0.02562 * 13 12 2 27 27 H 1.07999 * 120.76685 * 180.21580 * 14 13 12 28 28 H 1.08002 * 119.99820 * 359.97103 * 16 15 14 29 29 H 1.07998 * 119.76095 * 180.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0938 1.0983 2.2417 6 6 3.1268 2.8775 1.6727 7 7 3.3456 3.2573 2.9127 8 14 3.7338 3.9287 0.2530 9 1 2.6824 4.9077 -0.1230 10 1 4.9620 4.6549 0.6645 11 1 4.0396 3.0591 -0.9114 12 6 2.1566 -1.1979 0.0005 13 6 3.5478 -1.1880 0.1007 14 6 4.2292 -2.3737 0.1054 15 6 3.4956 -3.5689 -0.0021 16 6 4.1819 -4.8664 -0.0067 17 8 3.5403 -5.8916 -0.0993 18 6 2.1020 -3.5024 -0.1038 19 7 1.4873 -2.3389 -0.0996 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 1.6084 2.0284 -0.5138 24 1 3.1499 1.1384 -0.5137 25 1 3.8224 4.0833 3.0899 26 1 4.0817 -0.2525 0.1777 27 1 5.3061 -2.3916 0.1854 28 1 5.2582 -4.9083 0.0723 29 1 1.5265 -4.4126 -0.1865 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087717451.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:17 Heat of formation + Delta-G solvation = -7.344021 kcal Electronic energy + Delta-G solvation = -14235.240445 eV Core-core repulsion = 11737.172781 eV Total energy + Delta-G solvation = -2498.067664 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.34338 -39.56769 -37.54698 -34.76553 -33.60524 -31.57069 -30.43792 -27.36347 -25.79476 -23.99565 -23.13641 -21.60716 -19.12043 -18.46260 -17.88665 -17.17846 -16.40562 -15.95943 -15.73896 -15.58112 -15.20602 -14.95269 -14.43028 -14.08916 -13.88904 -13.52191 -13.29588 -13.19814 -12.72324 -12.43728 -12.04562 -11.75444 -10.95269 -10.90549 -10.82843 -10.68810 -10.18203 -8.44201 -8.32588 -6.41612 -0.14884 0.51980 1.39053 1.39724 1.49952 1.69082 2.13107 2.31767 3.00272 3.05101 3.55021 3.63182 3.99838 4.12070 4.23142 4.45945 4.58922 4.69273 4.75097 4.80195 4.91259 4.98675 5.12686 5.27780 5.39178 5.66712 5.87575 6.28791 6.51551 6.63111 6.65584 7.13476 7.26269 8.83409 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.039331 B = 0.007335 C = 0.006710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.743616 B = 3816.366339 C = 4171.851737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.589 5.589 3 C 0.228 3.772 4 C -0.542 4.542 5 H 0.025 0.975 6 C 0.018 3.982 7 N -0.943 5.943 8 Si 0.947 3.053 9 H -0.265 1.265 10 H -0.282 1.282 11 H -0.238 1.238 12 C 0.416 3.584 13 C -0.262 4.262 14 C 0.026 3.974 15 C -0.334 4.334 16 C 0.410 3.590 17 O -0.521 6.521 18 C 0.197 3.803 19 N -0.582 5.582 20 H 0.064 0.936 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.269 0.731 26 H 0.134 0.866 27 H 0.179 0.821 28 H 0.151 0.849 29 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 -8.047 -8.862 12.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.295 5.295 3 C 0.106 3.894 4 C -0.581 4.581 5 H 0.044 0.956 6 C -0.181 4.181 7 N -0.582 5.582 8 Si 0.769 3.231 9 H -0.190 1.190 10 H -0.208 1.208 11 H -0.161 1.161 12 C 0.180 3.820 13 C -0.287 4.287 14 C 0.001 3.999 15 C -0.341 4.341 16 C 0.273 3.727 17 O -0.398 6.398 18 C 0.036 3.964 19 N -0.301 5.301 20 H 0.082 0.918 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.152 0.848 27 H 0.196 0.804 28 H 0.167 0.833 29 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.533 -8.140 -8.872 12.138 hybrid contribution 0.808 0.997 0.286 1.315 sum 2.341 -7.143 -8.585 11.411 Atomic orbital electron populations 1.21583 0.78525 1.02435 1.01670 1.46723 1.06723 1.03205 1.72847 1.19637 0.93140 0.80964 0.95667 1.21506 1.37150 1.07301 0.92120 0.95642 1.25834 0.95251 0.98530 0.98497 1.70059 1.42246 1.24321 1.21559 0.85732 0.78420 0.79300 0.79660 1.18997 1.20798 1.16081 1.18960 0.89513 0.86304 0.87267 1.21424 0.93258 1.01184 1.12848 1.21601 1.01767 0.89350 0.87187 1.21698 0.95716 0.97784 1.18928 1.24171 0.96201 0.84504 0.67789 1.90495 1.72257 1.38021 1.39035 1.23023 0.92395 0.94186 0.86819 1.67282 1.40768 0.97803 1.24232 0.91766 0.91487 0.91624 0.93512 0.93477 0.92149 0.84830 0.80351 0.83314 0.81596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.51 10.41 127.77 1.33 4.84 15 2 N -0.59 -23.93 2.95 -733.32 -2.17 -26.10 15 3 C 0.23 9.86 3.85 85.63 0.33 10.19 15 4 C -0.54 -29.05 9.88 25.60 0.25 -28.80 15 5 H 0.03 1.59 8.06 -2.91 -0.02 1.56 15 6 C 0.02 0.96 5.47 84.66 0.46 1.42 15 7 N -0.94 -55.79 13.96 21.45 0.30 -55.49 15 8 Si 0.95 39.43 27.47 68.60 1.88 41.32 15 9 H -0.27 -10.67 7.11 99.48 0.71 -9.96 15 10 H -0.28 -11.73 7.11 99.48 0.71 -11.03 15 11 H -0.24 -8.83 6.54 99.48 0.65 -8.18 15 12 C 0.42 16.30 7.36 133.30 0.98 17.28 15 13 C -0.26 -9.25 9.11 22.22 0.20 -9.04 15 14 C 0.03 0.68 9.88 22.51 0.22 0.90 15 15 C -0.33 -8.98 5.89 -20.05 -0.12 -9.10 15 16 C 0.41 8.87 11.46 70.06 0.80 9.67 15 17 O -0.52 -15.22 17.18 -3.08 -0.05 -15.27 15 18 C 0.20 6.24 10.77 85.13 0.92 7.15 15 19 N -0.58 -21.45 9.12 -192.11 -1.75 -23.20 15 20 H 0.06 1.92 8.14 -2.39 -0.02 1.91 15 21 H 0.07 2.34 7.43 -2.39 -0.02 2.32 15 22 H 0.06 2.29 8.07 -2.39 -0.02 2.27 15 23 H 0.05 1.90 7.50 -2.39 -0.02 1.88 15 24 H 0.05 1.95 5.40 -2.39 -0.01 1.94 15 25 H 0.27 14.83 8.31 -92.70 -0.77 14.06 15 26 H 0.13 5.00 6.16 -2.91 -0.02 4.98 15 27 H 0.18 3.01 8.06 -2.91 -0.02 2.98 15 28 H 0.15 1.69 8.06 -2.91 -0.02 1.67 15 29 H 0.17 4.77 7.65 -2.91 -0.02 4.74 15 Total: -1.00 -67.76 258.34 4.69 -63.07 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 1.10 Total: 11.15 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 5.38 Total: 4.52 kcal Atomic # 7 Polarization: -101.17 SS G_CDS: -3.62 Total: -104.79 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.05 Total: -15.27 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 1.88 Total: 41.32 kcal Total: -67.76 4.69 -63.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087717451.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.726 kcal (2) G-P(sol) polarization free energy of solvation -67.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds