Wall clock time and date at job start Mon Mar 30 2020 02:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35275 * 116.99891 * 2 1 4 4 N 1.32563 * 120.68356 * 0.03025 * 3 2 1 5 5 C 1.31870 * 120.98674 * 179.97438 * 4 3 2 6 6 N 1.32052 * 122.46161 * 0.02562 * 5 4 3 7 7 C 1.32017 * 121.24854 * 359.95962 * 6 5 4 8 8 C 1.50697 * 120.58013 * 179.97438 * 7 6 5 9 9 C 1.53001 * 117.49945 * 8.79231 * 8 7 6 10 10 C 1.52996 * 117.50084 * 300.12631 * 8 7 6 11 11 C 1.40920 * 118.83457 * 0.03928 * 7 6 5 12 12 C 1.41173 * 121.08327 * 180.25356 * 11 7 6 13 13 H 1.08008 * 119.99957 * 322.45054 * 12 11 7 14 14 C 1.39955 * 120.00416 * 142.45129 * 12 11 7 15 15 N 1.30857 * 119.99499 * 339.46796 * 14 12 11 16 16 Si 1.86801 * 120.00353 * 159.46675 * 14 12 11 17 17 H 1.48505 * 109.46861 * 60.00039 * 16 14 12 18 18 H 1.48491 * 109.47205 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47080 * 300.00401 * 16 14 12 20 20 H 1.08994 * 109.46909 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46796 * 299.99680 * 1 2 3 22 22 H 1.08999 * 109.47387 * 59.99608 * 1 2 3 23 23 H 1.08000 * 118.77194 * 179.97438 * 5 4 3 24 24 H 1.09000 * 115.54860 * 154.45761 * 8 7 6 25 25 H 1.08994 * 117.49735 * 359.97438 * 9 8 7 26 26 H 1.08999 * 117.49883 * 145.02222 * 9 8 7 27 27 H 1.08993 * 117.50338 * 214.98088 * 10 8 7 28 28 H 1.09000 * 117.49506 * 359.97438 * 10 8 7 29 29 H 0.97006 * 119.99292 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0431 1.2053 0.0000 4 7 1.3344 2.3256 0.0006 5 6 1.9269 3.5037 0.0011 6 7 3.2407 3.6364 0.0006 7 6 4.0355 2.5823 0.0002 8 6 5.5330 2.7511 -0.0010 9 6 6.0848 4.1631 0.2056 10 6 6.1577 3.5068 -1.1754 11 6 3.4589 1.2964 -0.0003 12 6 4.2639 0.1367 0.0047 13 1 5.1834 0.1151 -0.5615 14 6 3.8705 -0.9851 0.7433 15 7 3.0132 -0.8554 1.7234 16 14 4.5692 -2.6676 0.3300 17 1 6.0465 -2.6402 0.4787 18 1 3.9971 -3.6812 1.2521 19 1 4.2190 -3.0188 -1.0698 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.3147 4.3934 0.0012 24 1 6.0998 1.9222 0.4229 25 1 5.3648 4.9699 0.3420 26 1 7.0150 4.2631 0.7649 27 1 7.1358 3.1754 -1.5241 28 1 5.4856 3.8814 -1.9475 29 1 2.7403 -1.6330 2.2350 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214553133.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:47 Heat of formation + Delta-G solvation = 24.814224 kcal Electronic energy + Delta-G solvation = -14921.055097 eV Core-core repulsion = 12424.381919 eV Total energy + Delta-G solvation = -2496.673178 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.46235 -37.20086 -35.84203 -33.93738 -31.23481 -30.41642 -26.53928 -25.72467 -23.22299 -22.09180 -21.59842 -19.83367 -17.55441 -17.10406 -15.94335 -15.20614 -14.98470 -14.62647 -13.59948 -13.45185 -13.35826 -12.82291 -12.57280 -11.87609 -11.41861 -11.08254 -11.06060 -10.89099 -10.77341 -10.61167 -10.54079 -9.93009 -9.70221 -9.38311 -9.04965 -8.42064 -7.88380 -7.37943 -6.85585 -4.44263 2.51555 2.78003 3.06212 3.07657 3.14889 3.91840 4.38107 4.60484 4.72506 5.41620 5.47410 5.57994 5.72696 5.75360 5.97776 6.04059 6.11195 6.23195 6.31810 6.43872 6.56090 6.79588 6.84126 7.00439 7.09005 7.15703 7.66442 8.12210 8.22337 8.53547 8.68813 8.97768 9.75166 10.12519 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.023141 B = 0.014054 C = 0.009341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.687522 B = 1991.896876 C = 2996.774390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.271 6.271 3 C 0.291 3.709 4 N -0.569 5.569 5 C 0.177 3.823 6 N -0.513 5.513 7 C 0.075 3.925 8 C -0.064 4.064 9 C -0.173 4.173 10 C -0.176 4.176 11 C 0.032 3.968 12 C -0.442 4.442 13 H 0.088 0.912 14 C 0.084 3.916 15 N -0.761 5.761 16 Si 0.909 3.091 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.263 1.263 20 H 0.075 0.925 21 H 0.044 0.956 22 H 0.040 0.960 23 H 0.161 0.839 24 H 0.116 0.884 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.288 0.188 -1.905 2.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.174 6.174 3 C 0.098 3.902 4 N -0.299 5.299 5 C -0.106 4.106 6 N -0.230 5.230 7 C -0.069 4.069 8 C -0.083 4.083 9 C -0.210 4.210 10 C -0.214 4.214 11 C 0.024 3.976 12 C -0.472 4.472 13 H 0.106 0.894 14 C -0.138 4.138 15 N -0.384 5.384 16 Si 0.734 3.266 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.187 1.187 20 H 0.093 0.907 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.178 0.822 24 H 0.133 0.867 25 H 0.118 0.882 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.679 0.612 -1.695 1.926 hybrid contribution 0.240 -1.458 -0.016 1.478 sum 0.919 -0.846 -1.712 2.119 Atomic orbital electron populations 1.22528 0.81289 1.00685 1.00706 1.86324 1.18936 1.24668 1.87489 1.20414 0.89431 0.83380 0.96935 1.67427 1.42675 0.99476 1.20336 1.23162 0.88008 0.92595 1.06864 1.67292 1.05834 1.35251 1.14578 1.20216 0.92911 0.87352 1.06392 1.20477 0.90765 0.95006 1.02031 1.22854 1.01859 0.97324 0.98975 1.22872 1.01257 1.05294 0.91991 1.18055 0.89486 0.94425 0.95626 1.19176 1.06996 0.95780 1.25246 0.89418 1.25782 0.93885 1.00904 0.93189 1.69715 1.23620 1.32924 1.12110 0.86340 0.79792 0.80769 0.79736 1.19032 1.20384 1.18746 0.90657 0.93707 0.94112 0.82216 0.86653 0.88161 0.89873 0.89615 0.89472 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.90 10.41 101.05 1.05 1.95 15 2 O -0.27 -6.79 7.45 -17.52 -0.13 -6.92 15 3 C 0.29 7.70 7.03 -15.85 -0.11 7.59 15 4 N -0.57 -14.34 9.37 -14.02 -0.13 -14.47 15 5 C 0.18 4.23 12.26 -91.87 -1.13 3.10 15 6 N -0.51 -12.47 9.47 -10.22 -0.10 -12.57 15 7 C 0.08 1.87 6.55 -81.50 -0.53 1.33 15 8 C -0.06 -1.34 5.47 -91.77 -0.50 -1.84 15 9 C -0.17 -3.09 10.04 -26.69 -0.27 -3.35 15 10 C -0.18 -3.13 10.24 -26.69 -0.27 -3.40 15 11 C 0.03 0.84 5.40 -106.38 -0.57 0.26 15 12 C -0.44 -11.33 7.91 -37.83 -0.30 -11.63 15 13 H 0.09 2.12 7.50 -52.48 -0.39 1.73 15 14 C 0.08 2.07 4.48 -17.32 -0.08 1.99 15 15 N -0.76 -19.47 11.19 55.55 0.62 -18.85 15 16 Si 0.91 18.42 29.61 -169.99 -5.03 13.38 15 17 H -0.27 -5.23 7.11 56.52 0.40 -4.82 15 18 H -0.28 -5.52 7.11 56.52 0.40 -5.12 15 19 H -0.26 -5.36 7.11 56.52 0.40 -4.95 15 20 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 21 H 0.04 0.90 8.12 -51.93 -0.42 0.48 15 22 H 0.04 0.78 8.12 -51.93 -0.42 0.36 15 23 H 0.16 3.24 8.06 -52.49 -0.42 2.82 15 24 H 0.12 2.40 7.33 -51.93 -0.38 2.02 15 25 H 0.10 1.89 7.62 -51.93 -0.40 1.49 15 26 H 0.08 1.28 8.14 -51.93 -0.42 0.85 15 27 H 0.09 1.30 8.14 -51.93 -0.42 0.88 15 28 H 0.09 1.61 8.14 -51.93 -0.42 1.19 15 29 H 0.28 6.67 8.30 -40.82 -0.34 6.33 15 LS Contribution 255.81 15.07 3.86 3.86 Total: -1.00 -28.57 255.81 -6.89 -35.46 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -3.26 Total: 4.11 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -2.71 Total: -3.99 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.39 Total: -45.89 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.13 Total: -6.92 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.57 -6.89 -35.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214553133.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.270 kcal (2) G-P(sol) polarization free energy of solvation -28.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds