Wall clock time and date at job start Mon Mar 30 2020 02:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35275 * 116.99891 * 2 1 4 4 N 1.32563 * 120.68356 * 0.03025 * 3 2 1 5 5 C 1.31870 * 120.98674 * 179.97438 * 4 3 2 6 6 N 1.32052 * 122.46161 * 0.02562 * 5 4 3 7 7 C 1.32017 * 121.24854 * 359.95962 * 6 5 4 8 8 C 1.50697 * 120.58013 * 179.97438 * 7 6 5 9 9 C 1.53001 * 117.49945 * 8.79231 * 8 7 6 10 10 C 1.52996 * 117.50084 * 300.12631 * 8 7 6 11 11 C 1.40920 * 118.83457 * 0.03928 * 7 6 5 12 12 C 1.41173 * 121.08327 * 180.25356 * 11 7 6 13 13 H 1.08008 * 119.99957 * 322.45054 * 12 11 7 14 14 C 1.39955 * 120.00416 * 142.45129 * 12 11 7 15 15 N 1.30857 * 119.99499 * 339.46796 * 14 12 11 16 16 Si 1.86801 * 120.00353 * 159.46675 * 14 12 11 17 17 H 1.48505 * 109.46861 * 60.00039 * 16 14 12 18 18 H 1.48491 * 109.47205 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47080 * 300.00401 * 16 14 12 20 20 H 1.08994 * 109.46909 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.46796 * 299.99680 * 1 2 3 22 22 H 1.08999 * 109.47387 * 59.99608 * 1 2 3 23 23 H 1.08000 * 118.77194 * 179.97438 * 5 4 3 24 24 H 1.09000 * 115.54860 * 154.45761 * 8 7 6 25 25 H 1.08994 * 117.49735 * 359.97438 * 9 8 7 26 26 H 1.08999 * 117.49883 * 145.02222 * 9 8 7 27 27 H 1.08993 * 117.50338 * 214.98088 * 10 8 7 28 28 H 1.09000 * 117.49506 * 359.97438 * 10 8 7 29 29 H 0.97006 * 119.99292 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0431 1.2053 0.0000 4 7 1.3344 2.3256 0.0006 5 6 1.9269 3.5037 0.0011 6 7 3.2407 3.6364 0.0006 7 6 4.0355 2.5823 0.0002 8 6 5.5330 2.7511 -0.0010 9 6 6.0848 4.1631 0.2056 10 6 6.1577 3.5068 -1.1754 11 6 3.4589 1.2964 -0.0003 12 6 4.2639 0.1367 0.0047 13 1 5.1834 0.1151 -0.5615 14 6 3.8705 -0.9851 0.7433 15 7 3.0132 -0.8554 1.7234 16 14 4.5692 -2.6676 0.3300 17 1 6.0465 -2.6402 0.4787 18 1 3.9971 -3.6812 1.2521 19 1 4.2190 -3.0188 -1.0698 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.3147 4.3934 0.0012 24 1 6.0998 1.9222 0.4229 25 1 5.3648 4.9699 0.3420 26 1 7.0150 4.2631 0.7649 27 1 7.1358 3.1754 -1.5241 28 1 5.4856 3.8814 -1.9475 29 1 2.7403 -1.6330 2.2350 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214553133.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:47 Heat of formation + Delta-G solvation = 7.437772 kcal Electronic energy + Delta-G solvation = -14921.808596 eV Core-core repulsion = 12424.381919 eV Total energy + Delta-G solvation = -2497.426678 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.31720 -38.96428 -37.47870 -35.77098 -33.08820 -32.28873 -28.23062 -27.58529 -24.96954 -23.93690 -23.04084 -21.56838 -19.43076 -18.92219 -17.73427 -16.98973 -16.61910 -16.38151 -15.25967 -15.17545 -15.07575 -14.61606 -14.26372 -13.63482 -13.17623 -12.78855 -12.73344 -12.47153 -12.33980 -12.20988 -12.16925 -11.59162 -11.31364 -11.09203 -10.89199 -10.20902 -9.78938 -9.27579 -8.67162 -6.34781 0.64724 0.86681 1.42332 1.51432 1.54797 2.24114 2.62674 2.82219 3.12726 3.64829 3.76106 3.81157 4.10169 4.20737 4.44750 4.49768 4.50842 4.70233 4.77050 4.86717 4.96137 5.10894 5.22753 5.30265 5.38765 5.47881 5.83039 6.24848 6.34171 6.65342 6.81958 7.09248 7.83794 8.33569 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.023141 B = 0.014054 C = 0.009341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.687522 B = 1991.896876 C = 2996.774390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.289 6.289 3 C 0.266 3.734 4 N -0.576 5.576 5 C 0.170 3.830 6 N -0.520 5.520 7 C 0.071 3.929 8 C -0.100 4.100 9 C -0.154 4.154 10 C -0.154 4.154 11 C -0.006 4.006 12 C -0.464 4.464 13 H 0.092 0.908 14 C 0.047 3.953 15 N -0.795 5.795 16 Si 0.978 3.022 17 H -0.254 1.254 18 H -0.271 1.271 19 H -0.265 1.265 20 H 0.107 0.893 21 H 0.037 0.963 22 H 0.046 0.954 23 H 0.193 0.807 24 H 0.112 0.888 25 H 0.089 0.911 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.077 0.923 29 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.359 -0.010 -2.296 3.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.193 6.193 3 C 0.075 3.925 4 N -0.307 5.307 5 C -0.114 4.114 6 N -0.236 5.236 7 C -0.073 4.073 8 C -0.119 4.119 9 C -0.191 4.191 10 C -0.192 4.192 11 C -0.013 4.013 12 C -0.494 4.494 13 H 0.110 0.890 14 C -0.171 4.171 15 N -0.419 5.419 16 Si 0.799 3.201 17 H -0.178 1.178 18 H -0.196 1.196 19 H -0.189 1.189 20 H 0.126 0.874 21 H 0.056 0.944 22 H 0.065 0.935 23 H 0.210 0.790 24 H 0.130 0.870 25 H 0.107 0.893 26 H 0.132 0.868 27 H 0.136 0.864 28 H 0.095 0.905 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.739 0.419 -2.086 2.748 hybrid contribution -0.143 -1.279 0.108 1.292 sum 1.597 -0.860 -1.978 2.684 Atomic orbital electron populations 1.22751 0.79180 1.02821 1.00597 1.86270 1.21164 1.24384 1.87445 1.20687 0.89969 0.84012 0.97848 1.67477 1.42795 0.99668 1.20780 1.23923 0.88552 0.93352 1.05572 1.67411 1.06014 1.35003 1.15204 1.20876 0.94940 0.87027 1.04478 1.20523 0.88728 0.96923 1.05724 1.22921 1.02367 0.94560 0.99251 1.22934 1.01930 1.03135 0.91224 1.18516 0.90151 0.95692 0.96963 1.19384 1.07446 0.96509 1.26022 0.89037 1.26582 0.93956 1.04153 0.92449 1.69773 1.24972 1.34099 1.13038 0.85304 0.79587 0.76046 0.79176 1.17810 1.19574 1.18943 0.87428 0.94393 0.93527 0.79025 0.87012 0.89282 0.86767 0.86425 0.90474 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.69 10.41 113.37 1.18 2.87 15 2 O -0.29 -14.65 7.45 -85.59 -0.64 -15.29 15 3 C 0.27 14.32 7.03 85.48 0.60 14.92 15 4 N -0.58 -29.27 9.37 -311.20 -2.92 -32.19 15 5 C 0.17 8.04 12.26 180.78 2.22 10.26 15 6 N -0.52 -25.15 9.47 -186.25 -1.76 -26.91 15 7 C 0.07 3.56 6.55 43.19 0.28 3.84 15 8 C -0.10 -4.11 5.47 -11.54 -0.06 -4.17 15 9 C -0.15 -5.13 10.04 30.62 0.31 -4.83 15 10 C -0.15 -5.12 10.24 30.62 0.31 -4.81 15 11 C -0.01 -0.32 5.40 -21.00 -0.11 -0.44 15 12 C -0.46 -24.05 7.91 23.41 0.19 -23.87 15 13 H 0.09 4.47 7.50 -2.91 -0.02 4.45 15 14 C 0.05 2.33 4.48 85.25 0.38 2.71 15 15 N -0.79 -41.09 11.19 21.83 0.24 -40.84 15 16 Si 0.98 37.34 29.61 68.60 2.03 39.37 15 17 H -0.25 -9.15 7.11 99.48 0.71 -8.44 15 18 H -0.27 -9.90 7.11 99.48 0.71 -9.20 15 19 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 20 H 0.11 3.50 8.14 -2.39 -0.02 3.48 15 21 H 0.04 1.53 8.12 -2.39 -0.02 1.51 15 22 H 0.05 1.77 8.12 -2.39 -0.02 1.75 15 23 H 0.19 7.53 8.06 -2.91 -0.02 7.50 15 24 H 0.11 4.61 7.33 -2.39 -0.02 4.59 15 25 H 0.09 3.19 7.62 -2.39 -0.02 3.18 15 26 H 0.11 3.10 8.14 -2.39 -0.02 3.08 15 27 H 0.12 3.15 8.14 -2.39 -0.02 3.13 15 28 H 0.08 2.72 8.14 -2.39 -0.02 2.70 15 29 H 0.29 13.64 8.30 -92.70 -0.77 12.87 15 Total: -1.00 -61.54 255.81 3.40 -58.14 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 1.15 Total: 21.22 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: 5.29 Total: -3.50 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -4.44 Total: -99.94 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.64 Total: -15.29 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Total: -61.54 3.40 -58.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214553133.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.577 kcal (2) G-P(sol) polarization free energy of solvation -61.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds