Wall clock time and date at job start Mon Mar 30 2020 02:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34782 * 119.99882 * 2 1 4 4 N 1.34769 * 119.99890 * 0.02562 * 3 2 1 5 5 O 1.21582 * 119.99974 * 179.97438 * 3 2 1 6 6 C 1.39129 * 120.00041 * 179.97438 * 2 1 3 7 7 C 1.38654 * 120.28360 * 90.27960 * 6 2 1 8 8 C 1.38212 * 120.03350 * 180.27706 * 7 6 2 9 9 C 1.38871 * 120.61719 * 359.71791 * 8 7 6 10 10 C 1.36462 * 120.57511 * 359.97438 * 9 8 7 11 11 C 1.40731 * 119.94689 * 0.02562 * 10 9 8 12 12 C 1.41073 * 120.30267 * 180.02562 * 11 10 9 13 13 H 1.08008 * 119.99662 * 154.62360 * 12 11 10 14 14 C 1.39942 * 119.99842 * 334.62466 * 12 11 10 15 15 N 1.30856 * 120.00285 * 334.58360 * 14 12 11 16 16 Si 1.86800 * 119.99781 * 154.58658 * 14 12 11 17 17 H 1.48496 * 109.47431 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.47154 * 300.00106 * 16 14 12 19 19 H 1.48498 * 109.47296 * 59.99728 * 16 14 12 20 20 H 1.09005 * 109.46504 * 269.99806 * 1 2 3 21 21 H 1.08998 * 109.47487 * 29.99610 * 1 2 3 22 22 H 1.08994 * 109.47029 * 150.00409 * 1 2 3 23 23 H 0.97007 * 120.00451 * 359.97438 * 4 3 2 24 24 H 0.97003 * 119.99858 * 179.97438 * 4 3 2 25 25 H 1.08003 * 119.98023 * 359.97438 * 7 6 2 26 26 H 1.07999 * 119.69385 * 179.74127 * 8 7 6 27 27 H 1.07998 * 119.71383 * 180.02562 * 9 8 7 28 28 H 1.07998 * 120.02782 * 180.02562 * 10 9 8 29 29 H 0.96998 * 120.00052 * 354.18707 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 7 1.4650 2.3344 0.0005 5 8 3.3547 1.1673 0.0005 6 6 2.1606 -1.2049 0.0005 7 6 2.5153 -1.8080 -1.1965 8 6 3.2013 -3.0079 -1.1900 9 6 3.5473 -3.6182 0.0085 10 6 3.2163 -3.0435 1.2011 11 6 2.5178 -1.8220 1.2224 12 6 2.1723 -1.2209 2.4510 13 1 2.0232 -0.1526 2.5065 14 6 2.0229 -2.0089 3.5979 15 7 1.7079 -3.2740 3.4860 16 14 2.2730 -1.2545 5.2884 17 1 2.0579 -2.2910 6.3297 18 1 3.6564 -0.7253 5.3945 19 1 1.3031 -0.1474 5.4849 20 1 -0.3632 0.0000 1.0277 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5137 23 1 0.4949 2.3344 0.0005 24 1 1.9500 3.1744 0.0009 25 1 2.2511 -1.3424 -2.1345 26 1 3.4712 -3.4749 -2.1256 27 1 4.0838 -4.5555 -0.0035 28 1 3.4902 -3.5257 2.1278 29 1 1.4955 -3.6458 2.6157 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214555787.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:56 Heat of formation + Delta-G solvation = -8.782629 kcal Electronic energy + Delta-G solvation = -14975.107584 eV Core-core repulsion = 12476.977537 eV Total energy + Delta-G solvation = -2498.130047 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.60265 -37.43154 -34.57382 -33.88327 -32.87337 -29.32621 -28.82001 -26.12225 -24.97517 -21.85423 -20.97878 -19.25824 -18.02469 -17.48869 -16.42290 -15.27382 -15.12853 -14.57988 -14.05250 -13.47941 -13.34533 -12.81107 -12.54249 -12.27991 -12.02398 -11.87908 -11.30535 -10.91979 -10.64669 -10.40714 -10.02515 -9.60544 -9.44010 -9.15757 -9.03830 -7.83770 -7.62856 -7.57653 -7.17736 -4.44695 2.70100 2.81835 3.15001 3.27849 3.37398 3.61618 3.94162 4.00307 4.54649 4.80317 5.44778 5.54017 5.89240 6.11226 6.17256 6.25547 6.49271 6.91720 6.98295 7.08675 7.24888 7.38018 7.45311 7.76363 7.80303 7.90329 8.00192 8.15486 8.33506 8.55172 8.77542 8.85918 9.41279 10.01813 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.021977 B = 0.013938 C = 0.009901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.771393 B = 2008.449905 C = 2827.251747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.550 5.550 3 C 0.702 3.298 4 N -0.877 5.877 5 O -0.588 6.588 6 C 0.014 3.986 7 C -0.063 4.063 8 C -0.252 4.252 9 C -0.080 4.080 10 C -0.210 4.210 11 C 0.109 3.891 12 C -0.501 4.501 13 H 0.073 0.927 14 C 0.039 3.961 15 N -0.794 5.794 16 Si 1.063 2.937 17 H -0.273 1.273 18 H -0.274 1.274 19 H -0.277 1.277 20 H 0.054 0.946 21 H 0.053 0.947 22 H 0.068 0.932 23 H 0.391 0.609 24 H 0.406 0.594 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.059 5.245 -2.785 7.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.281 5.281 3 C 0.403 3.597 4 N -0.447 5.447 5 O -0.465 6.465 6 C -0.078 4.078 7 C -0.083 4.083 8 C -0.272 4.272 9 C -0.099 4.099 10 C -0.230 4.230 11 C 0.104 3.896 12 C -0.529 4.529 13 H 0.091 0.909 14 C -0.183 4.183 15 N -0.416 5.416 16 Si 0.886 3.114 17 H -0.198 1.198 18 H -0.199 1.199 19 H -0.202 1.202 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.087 0.913 23 H 0.220 0.780 24 H 0.236 0.764 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.125 0.875 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.262 4.643 -1.158 6.408 hybrid contribution -0.394 0.745 -1.713 1.909 sum -4.656 5.388 -2.871 7.678 Atomic orbital electron populations 1.21642 0.80928 1.01345 1.01484 1.43503 1.04997 1.03320 1.76312 1.16077 0.85366 0.80645 0.77653 1.43140 1.10208 1.07294 1.84014 1.90916 1.11749 1.86064 1.57732 1.17068 1.08460 0.89624 0.92617 1.20680 0.97105 0.95031 0.95493 1.20148 1.11601 0.99151 0.96341 1.20396 0.98460 0.97885 0.93141 1.20844 1.05847 0.99456 0.96823 1.17756 0.88605 0.91069 0.92138 1.20375 1.42056 0.96958 0.93485 0.90862 1.27018 0.91575 0.94216 1.05491 1.70475 1.26113 1.13698 1.31359 0.83671 0.78129 0.76051 0.73522 1.19797 1.19921 1.20235 0.92742 0.92811 0.91319 0.77989 0.76368 0.89321 0.89037 0.89097 0.87461 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.47 10.19 59.85 0.61 2.08 15 2 N -0.55 -11.86 2.13 -125.75 -0.27 -12.13 15 3 C 0.70 15.24 8.28 -86.92 -0.72 14.52 15 4 N -0.88 -13.22 8.74 27.63 0.24 -12.98 15 5 O -0.59 -15.65 17.15 5.29 0.09 -15.56 15 6 C 0.01 0.35 4.46 -83.17 -0.37 -0.02 15 7 C -0.06 -1.49 9.96 -39.44 -0.39 -1.89 15 8 C -0.25 -5.78 10.04 -39.36 -0.39 -6.18 15 9 C -0.08 -1.90 9.97 -39.99 -0.40 -2.30 15 10 C -0.21 -5.48 7.89 -39.28 -0.31 -5.79 15 11 C 0.11 2.93 5.31 -106.65 -0.57 2.37 15 12 C -0.50 -13.49 8.61 -37.87 -0.33 -13.81 15 13 H 0.07 2.02 7.45 -52.48 -0.39 1.62 15 14 C 0.04 0.99 4.94 -17.33 -0.09 0.91 15 15 N -0.79 -20.76 12.31 55.55 0.68 -20.08 15 16 Si 1.06 22.05 30.00 -169.99 -5.10 16.95 15 17 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 15 19 H -0.28 -5.43 7.11 56.52 0.40 -5.03 15 20 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 21 H 0.05 0.65 6.36 -51.93 -0.33 0.32 15 22 H 0.07 1.10 8.05 -51.93 -0.42 0.69 15 23 H 0.39 4.58 6.56 -40.82 -0.27 4.31 15 24 H 0.41 5.30 8.93 -40.82 -0.36 4.94 15 25 H 0.09 1.91 8.06 -52.48 -0.42 1.48 15 26 H 0.09 1.84 8.06 -52.49 -0.42 1.42 15 27 H 0.09 1.89 8.06 -52.49 -0.42 1.46 15 28 H 0.11 2.85 6.48 -52.49 -0.34 2.51 15 29 H 0.30 7.99 6.68 -40.82 -0.27 7.72 15 LS Contribution 254.13 15.07 3.83 3.83 Total: -1.00 -32.19 254.13 -6.35 -38.54 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -2.87 Total: 11.55 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -2.96 Total: -10.11 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.66 Total: -45.19 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.09 Total: -15.56 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.10 Total: 16.95 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.19 -6.35 -38.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214555787.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.758 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds