Wall clock time and date at job start Mon Mar 30 2020 02:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34782 * 119.99882 * 2 1 4 4 N 1.34769 * 119.99890 * 0.02562 * 3 2 1 5 5 O 1.21582 * 119.99974 * 179.97438 * 3 2 1 6 6 C 1.39129 * 120.00041 * 179.97438 * 2 1 3 7 7 C 1.38654 * 120.28360 * 90.27960 * 6 2 1 8 8 C 1.38212 * 120.03350 * 180.27706 * 7 6 2 9 9 C 1.38871 * 120.61719 * 359.71791 * 8 7 6 10 10 C 1.36462 * 120.57511 * 359.97438 * 9 8 7 11 11 C 1.40731 * 119.94689 * 0.02562 * 10 9 8 12 12 C 1.41073 * 120.30267 * 180.02562 * 11 10 9 13 13 H 1.08008 * 119.99662 * 154.62360 * 12 11 10 14 14 C 1.39942 * 119.99842 * 334.62466 * 12 11 10 15 15 N 1.30856 * 120.00285 * 334.58360 * 14 12 11 16 16 Si 1.86800 * 119.99781 * 154.58658 * 14 12 11 17 17 H 1.48496 * 109.47431 * 179.97438 * 16 14 12 18 18 H 1.48499 * 109.47154 * 300.00106 * 16 14 12 19 19 H 1.48498 * 109.47296 * 59.99728 * 16 14 12 20 20 H 1.09005 * 109.46504 * 269.99806 * 1 2 3 21 21 H 1.08998 * 109.47487 * 29.99610 * 1 2 3 22 22 H 1.08994 * 109.47029 * 150.00409 * 1 2 3 23 23 H 0.97007 * 120.00451 * 359.97438 * 4 3 2 24 24 H 0.97003 * 119.99858 * 179.97438 * 4 3 2 25 25 H 1.08003 * 119.98023 * 359.97438 * 7 6 2 26 26 H 1.07999 * 119.69385 * 179.74127 * 8 7 6 27 27 H 1.07998 * 119.71383 * 180.02562 * 9 8 7 28 28 H 1.07998 * 120.02782 * 180.02562 * 10 9 8 29 29 H 0.96998 * 120.00052 * 354.18707 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 7 1.4650 2.3344 0.0005 5 8 3.3547 1.1673 0.0005 6 6 2.1606 -1.2049 0.0005 7 6 2.5153 -1.8080 -1.1965 8 6 3.2013 -3.0079 -1.1900 9 6 3.5473 -3.6182 0.0085 10 6 3.2163 -3.0435 1.2011 11 6 2.5178 -1.8220 1.2224 12 6 2.1723 -1.2209 2.4510 13 1 2.0232 -0.1526 2.5065 14 6 2.0229 -2.0089 3.5979 15 7 1.7079 -3.2740 3.4860 16 14 2.2730 -1.2545 5.2884 17 1 2.0579 -2.2910 6.3297 18 1 3.6564 -0.7253 5.3945 19 1 1.3031 -0.1474 5.4849 20 1 -0.3632 0.0000 1.0277 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3633 -0.8900 -0.5137 23 1 0.4949 2.3344 0.0005 24 1 1.9500 3.1744 0.0009 25 1 2.2511 -1.3424 -2.1345 26 1 3.4712 -3.4749 -2.1256 27 1 4.0838 -4.5555 -0.0035 28 1 3.4902 -3.5257 2.1278 29 1 1.4955 -3.6458 2.6157 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214555787.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:55 Heat of formation + Delta-G solvation = -30.687685 kcal Electronic energy + Delta-G solvation = -14976.057459 eV Core-core repulsion = 12476.977537 eV Total energy + Delta-G solvation = -2499.079921 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.30111 -39.27209 -36.32144 -35.77435 -34.39195 -31.23994 -30.59064 -27.67873 -26.84682 -23.60868 -22.88774 -20.96260 -19.83951 -19.10524 -18.02178 -16.95669 -16.86758 -16.36547 -15.72312 -15.29539 -15.04992 -14.57020 -14.22648 -13.97801 -13.82680 -13.30294 -13.12466 -12.68123 -12.43683 -12.00624 -11.87704 -11.47048 -11.24996 -10.93059 -10.65111 -9.58437 -9.52037 -9.46244 -9.13091 -6.44832 0.81494 0.92350 1.46041 1.60337 1.76174 2.05802 2.27626 2.29609 2.65656 3.38667 3.58971 4.29190 4.31218 4.41412 4.56999 4.74196 4.84749 4.97577 5.14828 5.32116 5.48551 5.74257 5.78652 5.88301 5.96515 6.05577 6.14968 6.25551 6.44409 6.82844 6.92777 7.09602 7.79423 8.02314 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.021977 B = 0.013938 C = 0.009901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.771393 B = 2008.449905 C = 2827.251747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.557 5.557 3 C 0.694 3.306 4 N -0.845 5.845 5 O -0.646 6.646 6 C 0.007 3.993 7 C -0.076 4.076 8 C -0.244 4.244 9 C -0.085 4.085 10 C -0.233 4.233 11 C 0.077 3.923 12 C -0.528 4.528 13 H 0.058 0.942 14 C 0.007 3.993 15 N -0.809 5.809 16 Si 1.109 2.891 17 H -0.265 1.265 18 H -0.275 1.275 19 H -0.257 1.257 20 H 0.048 0.952 21 H 0.102 0.898 22 H 0.070 0.930 23 H 0.411 0.589 24 H 0.419 0.581 25 H 0.111 0.889 26 H 0.126 0.874 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.916 6.100 -3.543 9.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.288 5.288 3 C 0.395 3.605 4 N -0.417 5.417 5 O -0.528 6.528 6 C -0.085 4.085 7 C -0.096 4.096 8 C -0.263 4.263 9 C -0.103 4.103 10 C -0.253 4.253 11 C 0.073 3.927 12 C -0.556 4.556 13 H 0.076 0.924 14 C -0.210 4.210 15 N -0.432 5.432 16 Si 0.927 3.073 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.181 1.181 20 H 0.067 0.933 21 H 0.120 0.880 22 H 0.089 0.911 23 H 0.244 0.756 24 H 0.251 0.749 25 H 0.129 0.871 26 H 0.144 0.856 27 H 0.137 0.863 28 H 0.109 0.891 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.194 5.528 -1.941 7.830 hybrid contribution -0.142 0.481 -1.657 1.732 sum -5.336 6.009 -3.599 8.805 Atomic orbital electron populations 1.21871 0.77929 1.03916 1.01936 1.43647 1.06770 1.02386 1.76031 1.16334 0.84860 0.81909 0.77447 1.42759 1.11199 1.05774 1.81937 1.90869 1.14441 1.87077 1.60365 1.17378 1.08017 0.90633 0.92520 1.21029 0.97092 0.95480 0.95986 1.20605 1.09713 0.98611 0.97411 1.20723 0.98139 0.98860 0.92605 1.20865 1.07162 1.00029 0.97280 1.18143 0.89354 0.91968 0.93231 1.20373 1.44386 0.96245 0.94634 0.92357 1.28248 0.90297 0.94000 1.08447 1.70572 1.27902 1.14329 1.30387 0.83100 0.78350 0.76076 0.69801 1.18907 1.20045 1.18091 0.93331 0.87983 0.91089 0.75614 0.74852 0.87092 0.85594 0.86315 0.89110 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.62 10.19 127.77 1.30 3.93 15 2 N -0.56 -23.50 2.13 -670.01 -1.43 -24.92 15 3 C 0.69 29.42 8.28 179.06 1.48 30.90 15 4 N -0.85 -23.38 8.74 -184.76 -1.61 -25.00 15 5 O -0.65 -34.56 17.15 -3.98 -0.07 -34.63 15 6 C 0.01 0.35 4.46 38.88 0.17 0.52 15 7 C -0.08 -3.49 9.96 22.36 0.22 -3.27 15 8 C -0.24 -10.67 10.04 22.42 0.22 -10.45 15 9 C -0.09 -3.95 9.97 22.01 0.22 -3.73 15 10 C -0.23 -12.44 7.89 22.46 0.18 -12.26 15 11 C 0.08 4.25 5.31 -21.18 -0.11 4.14 15 12 C -0.53 -29.18 8.61 23.38 0.20 -28.98 15 13 H 0.06 3.29 7.45 -2.91 -0.02 3.27 15 14 C 0.01 0.37 4.94 85.25 0.42 0.79 15 15 N -0.81 -43.39 12.31 21.83 0.27 -43.12 15 16 Si 1.11 44.64 30.00 68.60 2.06 46.70 15 17 H -0.26 -10.21 7.11 99.48 0.71 -9.50 15 18 H -0.28 -11.03 7.11 99.48 0.71 -10.33 15 19 H -0.26 -9.40 7.11 99.48 0.71 -8.70 15 20 H 0.05 1.56 8.14 -2.38 -0.02 1.54 15 21 H 0.10 2.09 6.36 -2.39 -0.02 2.08 15 22 H 0.07 2.15 8.05 -2.39 -0.02 2.13 15 23 H 0.41 8.14 6.56 -92.70 -0.61 7.53 15 24 H 0.42 9.90 8.93 -92.71 -0.83 9.07 15 25 H 0.11 4.50 8.06 -2.91 -0.02 4.48 15 26 H 0.13 4.60 8.06 -2.91 -0.02 4.58 15 27 H 0.12 4.74 8.06 -2.91 -0.02 4.71 15 28 H 0.09 5.02 6.48 -2.91 -0.02 5.01 15 29 H 0.29 15.84 6.68 -92.71 -0.62 15.22 15 Total: -1.00 -71.70 254.13 3.43 -68.27 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: -0.10 Total: 31.10 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: 4.31 Total: -18.40 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -2.77 Total: -93.04 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.07 Total: -34.63 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.06 Total: 46.70 kcal Total: -71.70 3.43 -68.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214555787.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.581 kcal (2) G-P(sol) polarization free energy of solvation -71.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds