Wall clock time and date at job start Mon Mar 30 2020 02:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34772 * 120.00048 * 2 1 4 4 N 1.34776 * 120.00424 * 354.69031 * 3 2 1 5 5 O 1.21589 * 119.99756 * 174.68480 * 3 2 1 6 6 C 1.39956 * 119.99690 * 180.02562 * 2 1 3 7 7 C 1.39293 * 119.94735 * 293.52760 * 6 2 1 8 8 C 1.38487 * 120.43196 * 180.02562 * 7 6 2 9 9 C 1.37681 * 120.31815 * 359.95178 * 8 7 6 10 10 C 1.40740 * 119.88708 * 0.07032 * 9 8 7 11 11 C 1.41404 * 120.21250 * 179.97438 * 10 9 8 12 12 H 1.08006 * 120.00018 * 145.99697 * 11 10 9 13 13 C 1.39929 * 120.00240 * 326.00686 * 11 10 9 14 14 N 1.30836 * 119.99979 * 358.98684 * 13 11 10 15 15 Si 1.86799 * 120.00425 * 178.98571 * 13 11 10 16 16 H 1.48498 * 109.46806 * 59.99801 * 15 13 11 17 17 H 1.48493 * 109.47678 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47031 * 300.00284 * 15 13 11 19 19 C 1.38233 * 119.95002 * 113.55372 * 6 2 1 20 20 H 1.09005 * 109.47477 * 270.00235 * 1 2 3 21 21 H 1.09003 * 109.47107 * 30.00142 * 1 2 3 22 22 H 1.08998 * 109.47688 * 150.00147 * 1 2 3 23 23 H 0.97000 * 119.99382 * 359.97438 * 4 3 2 24 24 H 0.97000 * 120.00451 * 180.02562 * 4 3 2 25 25 H 1.08002 * 119.78010 * 0.02562 * 7 6 2 26 26 H 1.07998 * 119.84020 * 179.97438 * 8 7 6 27 27 H 1.08002 * 120.05303 * 180.02562 * 9 8 7 28 28 H 0.97001 * 119.99886 * 179.97438 * 14 13 11 29 29 H 1.08001 * 120.15574 * 359.72125 * 19 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 7 1.4694 2.3319 -0.1080 5 8 3.3508 1.1694 0.0975 6 6 2.1647 -1.2121 -0.0005 7 6 2.0951 -2.0557 1.1057 8 6 2.7838 -3.2571 1.1161 9 6 3.5448 -3.6314 0.0315 10 6 3.6250 -2.7891 -1.0932 11 6 4.4049 -3.1665 -2.2107 12 1 4.0895 -2.8926 -3.2067 13 6 5.5853 -3.8949 -2.0262 14 7 5.9777 -4.2098 -0.8184 15 14 6.6009 -4.4179 -3.5042 16 1 7.0362 -3.2140 -4.2566 17 1 7.7946 -5.1713 -3.0431 18 1 5.7793 -5.2837 -4.3879 19 6 2.9242 -1.5700 -1.0986 20 1 -0.3634 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3634 -0.8899 -0.5138 23 1 0.5026 2.3300 -0.1861 24 1 1.9544 3.1719 -0.1084 25 1 1.5001 -1.7709 1.9609 26 1 2.7234 -3.9037 1.9790 27 1 4.0798 -4.5695 0.0440 28 1 6.7958 -4.7151 -0.6906 29 1 2.9756 -0.9185 -1.9585 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214555861.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:58 Heat of formation + Delta-G solvation = -2.646071 kcal Electronic energy + Delta-G solvation = -14501.210259 eV Core-core repulsion = 12003.346313 eV Total energy + Delta-G solvation = -2497.863946 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.80818 -37.29429 -34.95947 -33.57825 -32.73214 -29.80310 -28.59025 -26.20084 -25.19603 -22.00094 -20.71116 -19.47331 -18.10453 -16.98327 -16.44873 -15.43415 -15.05683 -14.72296 -14.42188 -13.57120 -13.18915 -12.93617 -12.76978 -12.34314 -12.10704 -11.61621 -11.12112 -11.03906 -10.59237 -10.38162 -10.01973 -9.68928 -9.56108 -9.37413 -9.12947 -8.38733 -7.39353 -7.07684 -6.57157 -4.33944 2.79283 2.90508 3.13247 3.15898 3.24639 3.30821 3.67971 4.03337 4.49932 4.75793 5.26033 5.56680 5.65407 5.80745 6.27698 6.40687 6.68948 6.92599 6.99374 7.09681 7.16165 7.25887 7.35930 7.73036 7.86291 8.02823 8.11669 8.25361 8.36281 8.68183 8.95226 8.98719 9.13097 10.36798 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.038593 B = 0.008048 C = 0.007280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.345562 B = 3478.311564 C = 3845.164628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.580 5.580 3 C 0.702 3.298 4 N -0.874 5.874 5 O -0.574 6.574 6 C 0.159 3.841 7 C -0.227 4.227 8 C -0.105 4.105 9 C -0.148 4.148 10 C 0.113 3.887 11 C -0.465 4.465 12 H 0.074 0.926 13 C 0.072 3.928 14 N -0.811 5.811 15 Si 0.915 3.085 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.266 1.266 19 C -0.191 4.191 20 H 0.051 0.949 21 H 0.060 0.940 22 H 0.075 0.925 23 H 0.392 0.608 24 H 0.409 0.591 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.126 0.874 28 H 0.278 0.722 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.388 5.650 0.352 10.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.314 5.314 3 C 0.402 3.598 4 N -0.444 5.444 5 O -0.450 6.450 6 C 0.069 3.931 7 C -0.248 4.248 8 C -0.124 4.124 9 C -0.168 4.168 10 C 0.110 3.890 11 C -0.496 4.496 12 H 0.093 0.907 13 C -0.143 4.143 14 N -0.438 5.438 15 Si 0.740 3.260 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.212 4.212 20 H 0.070 0.930 21 H 0.079 0.921 22 H 0.094 0.906 23 H 0.221 0.779 24 H 0.240 0.760 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.143 0.857 28 H 0.089 0.911 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.389 5.359 0.544 9.970 hybrid contribution 0.169 0.275 -0.567 0.653 sum -8.220 5.635 -0.024 9.966 Atomic orbital electron populations 1.21682 0.80207 1.02519 1.01275 1.44419 1.05664 1.04072 1.77202 1.15968 0.85353 0.80566 0.77939 1.43145 1.10803 1.07487 1.83009 1.91007 1.11812 1.85791 1.56359 1.17028 0.97085 0.84110 0.94841 1.20370 1.08777 0.98344 0.97274 1.20587 0.98137 0.95757 0.97877 1.21532 1.00023 1.00819 0.94421 1.17494 0.89240 0.88950 0.93306 1.19443 1.05422 1.30665 0.94112 0.90742 1.25835 0.97917 0.93676 0.96884 1.69755 1.21605 1.30508 1.21936 0.86266 0.78939 0.79304 0.81503 1.19143 1.20424 1.19060 1.21096 1.05280 0.97466 0.97369 0.93016 0.92110 0.90578 0.77885 0.75957 0.89340 0.88857 0.85668 0.91068 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.13 10.21 59.85 0.61 1.74 15 2 N -0.58 -11.15 2.92 -126.29 -0.37 -11.52 15 3 C 0.70 13.82 8.39 -86.92 -0.73 13.09 15 4 N -0.87 -11.30 8.76 27.63 0.24 -11.06 15 5 O -0.57 -14.53 16.90 5.29 0.09 -14.44 15 6 C 0.16 3.74 4.76 -83.76 -0.40 3.35 15 7 C -0.23 -5.23 9.84 -39.10 -0.38 -5.61 15 8 C -0.10 -2.50 10.02 -39.69 -0.40 -2.89 15 9 C -0.15 -3.95 8.64 -38.84 -0.34 -4.28 15 10 C 0.11 3.14 5.53 -106.85 -0.59 2.55 15 11 C -0.47 -12.86 9.05 -37.74 -0.34 -13.21 15 12 H 0.07 1.97 7.85 -52.48 -0.41 1.56 15 13 C 0.07 1.89 5.37 -17.34 -0.09 1.80 15 14 N -0.81 -21.93 10.74 55.55 0.60 -21.34 15 15 Si 0.91 19.61 29.56 -169.99 -5.02 14.58 15 16 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 17 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 19 C -0.19 -5.02 9.21 -38.69 -0.36 -5.37 15 20 H 0.05 0.60 8.14 -51.93 -0.42 0.17 15 21 H 0.06 0.57 6.17 -51.93 -0.32 0.25 15 22 H 0.08 0.99 8.05 -51.93 -0.42 0.58 15 23 H 0.39 3.63 6.48 -40.82 -0.26 3.37 15 24 H 0.41 4.58 8.93 -40.82 -0.36 4.22 15 25 H 0.09 1.83 8.06 -52.49 -0.42 1.40 15 26 H 0.09 1.96 8.06 -52.49 -0.42 1.53 15 27 H 0.13 3.41 6.27 -52.49 -0.33 3.08 15 28 H 0.28 6.90 8.30 -40.82 -0.34 6.56 15 29 H 0.09 2.43 8.06 -52.49 -0.42 2.01 15 LS Contribution 255.57 15.07 3.85 3.85 Total: -1.00 -33.33 255.57 -6.56 -39.89 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -2.93 Total: 8.87 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -3.02 Total: -8.84 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.47 Total: -43.91 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.09 Total: -14.44 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -33.33 -6.56 -39.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214555861.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.247 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds