Wall clock time and date at job start Mon Mar 30 2020 02:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34772 * 120.00048 * 2 1 4 4 N 1.34776 * 120.00424 * 354.69031 * 3 2 1 5 5 O 1.21589 * 119.99756 * 174.68480 * 3 2 1 6 6 C 1.39956 * 119.99690 * 180.02562 * 2 1 3 7 7 C 1.39293 * 119.94735 * 293.52760 * 6 2 1 8 8 C 1.38487 * 120.43196 * 180.02562 * 7 6 2 9 9 C 1.37681 * 120.31815 * 359.95178 * 8 7 6 10 10 C 1.40740 * 119.88708 * 0.07032 * 9 8 7 11 11 C 1.41404 * 120.21250 * 179.97438 * 10 9 8 12 12 H 1.08006 * 120.00018 * 145.99697 * 11 10 9 13 13 C 1.39929 * 120.00240 * 326.00686 * 11 10 9 14 14 N 1.30836 * 119.99979 * 358.98684 * 13 11 10 15 15 Si 1.86799 * 120.00425 * 178.98571 * 13 11 10 16 16 H 1.48498 * 109.46806 * 59.99801 * 15 13 11 17 17 H 1.48493 * 109.47678 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47031 * 300.00284 * 15 13 11 19 19 C 1.38233 * 119.95002 * 113.55372 * 6 2 1 20 20 H 1.09005 * 109.47477 * 270.00235 * 1 2 3 21 21 H 1.09003 * 109.47107 * 30.00142 * 1 2 3 22 22 H 1.08998 * 109.47688 * 150.00147 * 1 2 3 23 23 H 0.97000 * 119.99382 * 359.97438 * 4 3 2 24 24 H 0.97000 * 120.00451 * 180.02562 * 4 3 2 25 25 H 1.08002 * 119.78010 * 0.02562 * 7 6 2 26 26 H 1.07998 * 119.84020 * 179.97438 * 8 7 6 27 27 H 1.08002 * 120.05303 * 180.02562 * 9 8 7 28 28 H 0.97001 * 119.99886 * 179.97438 * 14 13 11 29 29 H 1.08001 * 120.15574 * 359.72125 * 19 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 7 1.4694 2.3319 -0.1080 5 8 3.3508 1.1694 0.0975 6 6 2.1647 -1.2121 -0.0005 7 6 2.0951 -2.0557 1.1057 8 6 2.7838 -3.2571 1.1161 9 6 3.5448 -3.6314 0.0315 10 6 3.6250 -2.7891 -1.0932 11 6 4.4049 -3.1665 -2.2107 12 1 4.0895 -2.8926 -3.2067 13 6 5.5853 -3.8949 -2.0262 14 7 5.9777 -4.2098 -0.8184 15 14 6.6009 -4.4179 -3.5042 16 1 7.0362 -3.2140 -4.2566 17 1 7.7946 -5.1713 -3.0431 18 1 5.7793 -5.2837 -4.3879 19 6 2.9242 -1.5700 -1.0986 20 1 -0.3634 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3634 -0.8899 -0.5138 23 1 0.5026 2.3300 -0.1861 24 1 1.9544 3.1719 -0.1084 25 1 1.5001 -1.7709 1.9609 26 1 2.7234 -3.9037 1.9790 27 1 4.0798 -4.5695 0.0440 28 1 6.7958 -4.7151 -0.6906 29 1 2.9756 -0.9185 -1.9585 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214555861.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:58 Heat of formation + Delta-G solvation = -26.520279 kcal Electronic energy + Delta-G solvation = -14502.245523 eV Core-core repulsion = 12003.346313 eV Total energy + Delta-G solvation = -2498.899209 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.36749 -39.14391 -36.63147 -35.32783 -34.26572 -31.77728 -30.30426 -27.54151 -27.17438 -23.71251 -22.64680 -21.13284 -19.63003 -18.61412 -17.96339 -17.28366 -16.66168 -16.41202 -16.18317 -15.18381 -14.94083 -14.67460 -14.10466 -14.00504 -13.54525 -13.35874 -12.90817 -12.84305 -12.47639 -12.21155 -11.87168 -11.52981 -11.34240 -11.06655 -10.71976 -9.98449 -9.36782 -8.94291 -8.53203 -6.41473 0.91112 0.96802 1.37506 1.49918 1.51454 1.88735 2.14818 2.23906 2.76170 3.37090 3.65443 4.26921 4.41985 4.56515 4.60602 4.81767 4.96540 5.04291 5.13808 5.33024 5.37206 5.61510 5.84579 5.99354 6.00033 6.07796 6.15130 6.39748 6.67716 6.93820 6.96954 7.00153 7.66877 8.42607 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.038593 B = 0.008048 C = 0.007280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.345562 B = 3478.311564 C = 3845.164628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.585 5.585 3 C 0.695 3.305 4 N -0.839 5.839 5 O -0.641 6.641 6 C 0.166 3.834 7 C -0.223 4.223 8 C -0.102 4.102 9 C -0.173 4.173 10 C 0.082 3.918 11 C -0.505 4.505 12 H 0.071 0.929 13 C 0.028 3.972 14 N -0.843 5.843 15 Si 0.989 3.011 16 H -0.267 1.267 17 H -0.266 1.266 18 H -0.255 1.255 19 C -0.216 4.216 20 H 0.076 0.924 21 H 0.101 0.899 22 H 0.074 0.926 23 H 0.414 0.586 24 H 0.421 0.579 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.111 0.889 28 H 0.285 0.715 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.889 6.451 0.688 12.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.318 5.318 3 C 0.395 3.605 4 N -0.411 5.411 5 O -0.521 6.521 6 C 0.075 3.925 7 C -0.243 4.243 8 C -0.121 4.121 9 C -0.193 4.193 10 C 0.080 3.920 11 C -0.536 4.536 12 H 0.089 0.911 13 C -0.184 4.184 14 N -0.470 5.470 15 Si 0.810 3.190 16 H -0.192 1.192 17 H -0.191 1.191 18 H -0.179 1.179 19 C -0.237 4.237 20 H 0.094 0.906 21 H 0.119 0.881 22 H 0.093 0.907 23 H 0.248 0.752 24 H 0.254 0.746 25 H 0.140 0.860 26 H 0.142 0.858 27 H 0.129 0.871 28 H 0.096 0.904 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.994 6.205 0.887 11.797 hybrid contribution 0.479 0.132 -0.584 0.767 sum -9.515 6.337 0.303 11.436 Atomic orbital electron populations 1.22069 0.76208 1.04615 1.03510 1.44504 1.07922 1.02499 1.76901 1.16245 0.84721 0.81917 0.77647 1.42756 1.11891 1.05776 1.80694 1.90967 1.14927 1.86911 1.59318 1.17120 0.95970 0.85634 0.93778 1.20730 1.08195 0.97609 0.97806 1.20931 0.96823 0.96503 0.97832 1.21487 1.01630 1.00638 0.95524 1.17853 0.90058 0.89930 0.94176 1.19721 1.06955 1.32725 0.94155 0.91095 1.26748 0.98513 0.93024 1.00073 1.69833 1.22287 1.30974 1.23926 0.85152 0.77424 0.78912 0.77527 1.19159 1.19063 1.17873 1.21128 1.06980 0.97285 0.98332 0.90594 0.88066 0.90679 0.75230 0.74571 0.86046 0.85799 0.87149 0.90414 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.72 10.21 127.77 1.31 3.02 15 2 N -0.59 -21.37 2.92 -671.73 -1.96 -23.33 15 3 C 0.69 26.33 8.39 179.06 1.50 27.83 15 4 N -0.84 -19.09 8.76 -184.75 -1.62 -20.71 15 5 O -0.64 -32.66 16.90 -4.00 -0.07 -32.73 15 6 C 0.17 7.75 4.76 38.10 0.18 7.93 15 7 C -0.22 -9.91 9.84 22.58 0.22 -9.68 15 8 C -0.10 -4.81 10.02 22.20 0.22 -4.59 15 9 C -0.17 -9.47 8.64 22.75 0.20 -9.28 15 10 C 0.08 4.77 5.53 -21.31 -0.12 4.65 15 11 C -0.50 -29.16 9.05 23.46 0.21 -28.94 15 12 H 0.07 3.95 7.85 -2.91 -0.02 3.93 15 13 C 0.03 1.53 5.37 85.25 0.46 1.99 15 14 N -0.84 -46.87 10.74 21.82 0.23 -46.63 15 15 Si 0.99 40.84 29.56 68.60 2.03 42.87 15 16 H -0.27 -10.93 7.11 99.48 0.71 -10.23 15 17 H -0.27 -10.33 7.11 99.48 0.71 -9.63 15 18 H -0.25 -9.97 7.11 99.48 0.71 -9.26 15 19 C -0.22 -11.72 9.21 22.85 0.21 -11.51 15 20 H 0.08 1.39 8.14 -2.38 -0.02 1.37 15 21 H 0.10 1.41 6.17 -2.39 -0.01 1.40 15 22 H 0.07 1.73 8.05 -2.39 -0.02 1.71 15 23 H 0.41 5.80 6.48 -92.71 -0.60 5.20 15 24 H 0.42 8.23 8.93 -92.71 -0.83 7.41 15 25 H 0.12 4.57 8.06 -2.91 -0.02 4.55 15 26 H 0.12 4.97 8.06 -2.91 -0.02 4.94 15 27 H 0.11 6.27 6.27 -2.91 -0.02 6.25 15 28 H 0.29 14.41 8.30 -92.71 -0.77 13.64 15 29 H 0.08 4.32 8.06 -2.91 -0.02 4.30 15 Total: -1.00 -76.29 255.57 2.76 -73.52 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.24 Total: 25.59 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 4.39 Total: -18.58 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -3.35 Total: -90.68 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.07 Total: -32.73 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -76.29 2.76 -73.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214555861.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.003 kcal (2) G-P(sol) polarization free energy of solvation -76.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds