Wall clock time and date at job start Mon Mar 30 2020 02:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34777 * 120.00009 * 2 1 4 4 N 1.34775 * 119.99933 * 4.97599 * 3 2 1 5 5 O 1.21580 * 120.00011 * 184.98030 * 3 2 1 6 6 C 1.39238 * 120.00116 * 179.97438 * 2 1 3 7 7 C 1.39473 * 119.83782 * 293.59984 * 6 2 1 8 8 C 1.36374 * 120.17535 * 180.29654 * 7 6 2 9 9 C 1.40878 * 119.82318 * 359.47817 * 8 7 6 10 10 C 1.41153 * 120.16307 * 180.25959 * 9 8 7 11 11 H 1.08007 * 119.99852 * 195.41916 * 10 9 8 12 12 C 1.39886 * 120.00384 * 15.41240 * 10 9 8 13 13 N 1.30885 * 119.99950 * 30.48824 * 12 10 9 14 14 Si 1.86795 * 120.00313 * 210.48196 * 12 10 9 15 15 H 1.48503 * 109.46892 * 95.00318 * 14 12 10 16 16 H 1.48504 * 109.47325 * 214.99856 * 14 12 10 17 17 H 1.48494 * 109.47401 * 335.00099 * 14 12 10 18 18 C 1.40866 * 119.66967 * 0.51714 * 9 8 7 19 19 C 1.36379 * 119.83029 * 359.73130 * 18 9 8 20 20 H 1.08995 * 109.47581 * 270.00544 * 1 2 3 21 21 H 1.08998 * 109.47031 * 30.00360 * 1 2 3 22 22 H 1.09000 * 109.46885 * 150.00297 * 1 2 3 23 23 H 0.97003 * 120.00270 * 0.02562 * 4 3 2 24 24 H 0.97001 * 119.99938 * 179.97438 * 4 3 2 25 25 H 1.08008 * 119.91486 * 0.02562 * 7 6 2 26 26 H 1.07998 * 120.09522 * 179.69850 * 8 7 6 27 27 H 0.96994 * 120.00166 * 180.02562 * 13 12 10 28 28 H 1.08001 * 120.08472 * 179.71532 * 18 9 8 29 29 H 1.08003 * 119.91660 * 179.97438 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 7 1.4688 2.3322 0.1012 5 8 3.3512 1.1692 -0.0914 6 6 2.1612 -1.2058 0.0005 7 6 2.0887 -2.0485 1.1096 8 6 2.7727 -3.2283 1.1199 9 6 3.5451 -3.6002 0.0020 10 6 4.2515 -4.8222 0.0028 11 1 5.0289 -4.9971 -0.7262 12 6 3.9447 -5.8069 0.9479 13 7 2.7249 -5.9126 1.4104 14 14 5.2758 -6.9710 1.5497 15 1 5.8603 -6.4455 2.8097 16 1 4.6861 -8.3109 1.7988 17 1 6.3393 -7.0819 0.5193 18 6 3.6133 -2.7438 -1.1144 19 6 2.9279 -1.5648 -1.1080 20 1 -0.3634 0.0001 1.0276 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3633 -0.8900 -0.5138 23 1 0.5015 2.3306 0.1745 24 1 1.9538 3.1722 0.1016 25 1 1.4929 -1.7639 1.9643 26 1 2.7195 -3.8775 1.9813 27 1 2.5122 -6.5951 2.0660 28 1 4.2071 -3.0202 -1.9732 29 1 2.9796 -0.9070 -1.9630 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214555948.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:00 Heat of formation + Delta-G solvation = -27.140345 kcal Electronic energy + Delta-G solvation = -14422.539661 eV Core-core repulsion = 11923.613564 eV Total energy + Delta-G solvation = -2498.926097 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.27311 -39.17171 -36.62045 -35.40281 -34.17851 -31.45851 -30.98858 -27.94803 -26.58126 -23.44173 -22.78326 -20.96921 -19.37303 -19.16921 -18.03814 -17.24269 -16.62598 -16.52462 -15.78094 -15.20273 -14.89627 -14.54636 -13.99061 -13.95919 -13.83254 -13.24237 -13.13861 -12.84391 -12.53164 -12.33799 -11.77002 -11.47630 -11.26363 -10.97112 -10.64244 -9.82734 -9.48278 -9.13780 -8.79497 -6.29610 0.85319 1.15638 1.38315 1.50231 1.53869 2.04182 2.18591 2.22562 2.59926 3.46767 3.73196 4.31196 4.39407 4.41912 4.62763 4.85738 4.93025 5.10387 5.20421 5.35225 5.44040 5.63104 5.78407 6.02619 6.05928 6.13976 6.23861 6.38976 6.63309 6.87327 6.99341 7.10044 7.76996 8.17585 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.058155 B = 0.006897 C = 0.006607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.355379 B = 4058.536587 C = 4236.920601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.567 5.567 3 C 0.692 3.308 4 N -0.843 5.843 5 O -0.643 6.643 6 C -0.001 4.001 7 C -0.088 4.088 8 C -0.200 4.200 9 C 0.086 3.914 10 C -0.493 4.493 11 H 0.078 0.922 12 C 0.047 3.953 13 N -0.794 5.794 14 Si 0.978 3.022 15 H -0.263 1.263 16 H -0.261 1.261 17 H -0.258 1.258 18 C -0.250 4.250 19 C -0.066 4.066 20 H 0.068 0.932 21 H 0.099 0.901 22 H 0.069 0.931 23 H 0.413 0.587 24 H 0.420 0.580 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.295 0.705 28 H 0.097 0.903 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.888 7.510 0.859 10.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.299 5.299 3 C 0.392 3.608 4 N -0.414 5.414 5 O -0.524 6.524 6 C -0.093 4.093 7 C -0.108 4.108 8 C -0.220 4.220 9 C 0.083 3.917 10 C -0.521 4.521 11 H 0.096 0.904 12 C -0.172 4.172 13 N -0.417 5.417 14 Si 0.798 3.202 15 H -0.188 1.188 16 H -0.185 1.185 17 H -0.182 1.182 18 C -0.270 4.270 19 C -0.086 4.086 20 H 0.087 0.913 21 H 0.117 0.883 22 H 0.087 0.913 23 H 0.245 0.755 24 H 0.253 0.747 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.106 0.894 28 H 0.115 0.885 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.358 7.227 0.924 9.669 hybrid contribution 0.241 -0.234 0.155 0.370 sum -6.116 6.993 1.079 9.353 Atomic orbital electron populations 1.22019 0.77334 1.04206 1.02930 1.43962 1.07172 1.02410 1.76314 1.16337 0.84822 0.81894 0.77748 1.42775 1.11724 1.05903 1.81003 1.90908 1.14697 1.86956 1.59825 1.16703 1.07326 0.89028 0.96292 1.20587 0.99423 0.94775 0.96001 1.20868 1.04209 0.97603 0.99315 1.17948 0.90109 0.92894 0.90730 1.19841 1.17739 0.99416 1.15057 0.90392 1.26818 0.97469 0.98957 0.93997 1.69929 1.20137 1.29603 1.22026 0.85255 0.78600 0.76910 0.79406 1.18757 1.18499 1.18185 1.20674 1.08868 0.98273 0.99213 1.20442 0.96731 0.95083 0.96326 0.91319 0.88271 0.91260 0.75466 0.74732 0.87368 0.87419 0.89361 0.88511 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.86 9.96 127.77 1.27 3.13 15 2 N -0.57 -20.85 2.90 -671.09 -1.95 -22.80 15 3 C 0.69 25.55 8.42 179.05 1.51 27.06 15 4 N -0.84 -18.86 8.72 -184.75 -1.61 -20.47 15 5 O -0.64 -31.13 16.69 -3.97 -0.07 -31.20 15 6 C 0.00 -0.07 4.85 38.56 0.19 0.12 15 7 C -0.09 -4.26 9.76 22.13 0.22 -4.04 15 8 C -0.20 -10.80 8.76 22.48 0.20 -10.60 15 9 C 0.09 4.82 5.64 -21.27 -0.12 4.70 15 10 C -0.49 -27.04 8.98 23.39 0.21 -26.83 15 11 H 0.08 4.17 8.00 -2.91 -0.02 4.14 15 12 C 0.05 2.35 4.92 85.23 0.42 2.77 15 13 N -0.79 -40.16 11.20 21.82 0.24 -39.92 15 14 Si 0.98 37.48 29.65 68.60 2.03 39.51 15 15 H -0.26 -9.90 7.11 99.48 0.71 -9.20 15 16 H -0.26 -9.23 7.11 99.48 0.71 -8.53 15 17 H -0.26 -9.77 7.11 99.48 0.71 -9.07 15 18 C -0.25 -13.37 9.74 22.48 0.22 -13.15 15 19 C -0.07 -3.31 9.18 22.14 0.20 -3.10 15 20 H 0.07 1.43 8.14 -2.39 -0.02 1.41 15 21 H 0.10 1.56 6.58 -2.39 -0.02 1.54 15 22 H 0.07 1.80 8.05 -2.39 -0.02 1.78 15 23 H 0.41 5.93 6.69 -92.71 -0.62 5.31 15 24 H 0.42 7.93 8.93 -92.71 -0.83 7.11 15 25 H 0.11 4.63 8.06 -2.91 -0.02 4.61 15 26 H 0.11 5.90 5.99 -2.91 -0.02 5.89 15 27 H 0.30 13.20 8.30 -92.71 -0.77 12.43 15 28 H 0.10 4.91 8.06 -2.91 -0.02 4.89 15 29 H 0.09 4.41 8.06 -2.91 -0.02 4.38 15 Total: -1.00 -70.81 255.54 2.70 -68.10 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: -0.26 Total: 26.71 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 4.31 Total: -19.95 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -3.31 Total: -83.18 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.07 Total: -31.20 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -70.81 2.70 -68.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214555948.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.963 kcal (2) G-P(sol) polarization free energy of solvation -70.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds