Wall clock time and date at job start Mon Mar 30 2020 02:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34774 * 119.99663 * 2 1 4 4 O 1.21595 * 119.99719 * 185.32204 * 3 2 1 5 5 N 1.34772 * 120.00331 * 5.31643 * 3 2 1 6 6 C 1.37165 * 120.00386 * 180.02562 * 5 3 2 7 7 H 1.08001 * 119.99830 * 359.97438 * 6 5 3 8 8 C 1.38882 * 120.00469 * 180.02562 * 6 5 3 9 9 N 1.31466 * 119.99687 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00238 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46768 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46995 * 120.00053 * 10 8 6 13 13 H 1.48503 * 109.47106 * 240.00271 * 10 8 6 14 14 C 1.39902 * 120.00201 * 179.97438 * 2 1 3 15 15 C 1.38884 * 120.06622 * 114.54838 * 14 2 1 16 16 C 1.38117 * 119.92328 * 179.97438 * 15 14 2 17 17 C 1.38276 * 120.07400 * 359.97438 * 16 15 14 18 18 C 1.38285 * 120.14468 * 0.28127 * 17 16 15 19 19 C 1.38120 * 120.06771 * 359.48828 * 18 17 16 20 20 H 1.08992 * 109.47047 * 270.00149 * 1 2 3 21 21 H 1.08995 * 109.46830 * 30.01000 * 1 2 3 22 22 H 1.09001 * 109.46345 * 149.99857 * 1 2 3 23 23 H 0.97004 * 120.00254 * 0.02562 * 5 3 2 24 24 H 0.97009 * 119.99744 * 179.97438 * 9 8 6 25 25 H 1.07993 * 120.03752 * 0.02562 * 15 14 2 26 26 H 1.07996 * 119.95798 * 180.02562 * 16 15 14 27 27 H 1.07997 * 119.93118 * 179.97438 * 17 16 15 28 28 H 1.08000 * 119.96827 * 179.72118 * 18 17 16 29 29 H 1.07999 * 120.03459 * 180.24238 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3509 1.1695 -0.0977 5 7 1.4694 2.3319 0.1081 6 6 2.1551 3.5198 0.1076 7 1 3.2316 3.5219 0.0209 8 6 1.4652 4.7200 0.2196 9 7 0.1549 4.7174 0.3266 10 14 2.3991 6.3378 0.2181 11 1 3.8537 6.0695 0.0862 12 1 1.9442 7.1709 -0.9239 13 1 2.1417 7.0591 1.4905 14 6 2.1647 -1.2116 0.0005 15 6 2.9450 -1.5649 -1.0926 16 6 3.6348 -2.7615 -1.0887 17 6 3.5495 -3.6070 0.0021 18 6 2.7692 -3.2605 1.0899 19 6 2.0806 -2.0631 1.0943 20 1 -0.3633 0.0000 1.0276 21 1 -0.3633 0.8899 -0.5140 22 1 -0.3632 -0.8900 -0.5139 23 1 0.5025 2.3301 0.1864 24 1 -0.3269 5.5557 0.4052 25 1 3.0131 -0.9045 -1.9443 26 1 4.2422 -3.0366 -1.9383 27 1 4.0895 -4.5422 0.0025 28 1 2.7010 -3.9251 1.9385 29 1 1.4745 -1.7913 1.9458 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217264188.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:02 Heat of formation + Delta-G solvation = 8.792592 kcal Electronic energy + Delta-G solvation = -14406.229842 eV Core-core repulsion = 11908.861914 eV Total energy + Delta-G solvation = -2497.367928 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.79450 -37.99023 -34.75357 -33.96101 -31.28186 -30.63601 -29.41491 -26.18906 -24.83603 -22.34265 -21.99093 -19.29765 -18.16699 -16.72513 -16.61311 -15.56735 -15.25161 -14.60364 -14.04720 -13.79845 -13.37430 -13.12060 -12.88877 -12.54253 -12.23750 -12.04656 -11.49004 -11.26100 -11.09147 -10.91773 -10.29620 -10.14792 -9.58154 -8.94640 -8.78821 -8.63656 -7.99934 -7.77951 -6.34320 -3.76198 1.60810 1.68881 3.22072 3.29687 3.35854 3.56847 4.03205 4.25116 4.31429 5.17787 5.19516 5.34318 5.36820 5.44835 5.65296 5.70108 5.76004 5.91486 5.95671 6.07046 6.29745 6.60658 6.75495 6.86962 7.02693 7.38243 7.60748 7.76177 8.32640 8.70339 9.22706 9.62132 10.12929 10.85248 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.056301 B = 0.006741 C = 0.006341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.203131 B = 4152.556235 C = 4414.531909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.606 5.606 3 C 0.655 3.345 4 O -0.612 6.612 5 N -0.581 5.581 6 C -0.286 4.286 7 H 0.103 0.897 8 C 0.018 3.982 9 N -0.910 5.910 10 Si 0.931 3.069 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.282 1.282 14 C 0.186 3.814 15 C -0.106 4.106 16 C -0.113 4.113 17 C -0.136 4.136 18 C -0.115 4.115 19 C -0.131 4.131 20 H 0.050 0.950 21 H 0.075 0.925 22 H 0.065 0.935 23 H 0.393 0.607 24 H 0.269 0.731 25 H 0.122 0.878 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.629 -12.747 -0.503 12.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.342 5.342 3 C 0.358 3.642 4 O -0.494 6.494 5 N -0.222 5.222 6 C -0.416 4.416 7 H 0.121 0.879 8 C -0.183 4.183 9 N -0.553 5.553 10 Si 0.759 3.241 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.093 3.907 15 C -0.126 4.126 16 C -0.132 4.132 17 C -0.154 4.154 18 C -0.133 4.133 19 C -0.152 4.152 20 H 0.069 0.931 21 H 0.094 0.906 22 H 0.083 0.917 23 H 0.228 0.772 24 H 0.079 0.921 25 H 0.140 0.860 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.077 -12.461 -0.555 12.474 hybrid contribution -0.288 0.926 0.111 0.976 sum -0.212 -11.536 -0.444 11.546 Atomic orbital electron populations 1.21668 0.79682 1.02823 1.01494 1.44557 1.05668 1.03363 1.80567 1.15818 0.85390 0.80000 0.82997 1.90767 1.12049 1.85640 1.60933 1.41146 1.09337 1.03060 1.68698 1.19649 0.93424 0.81525 1.46991 0.87924 1.25177 0.95730 0.99403 0.97942 1.69643 1.06152 1.27885 1.51586 0.85770 0.79580 0.81185 0.77613 1.19315 1.20861 1.20857 1.17367 0.94619 0.85776 0.92924 1.21344 0.97324 0.95961 0.97954 1.20988 0.99391 0.94247 0.98551 1.21040 1.00159 0.99867 0.94373 1.20916 0.97576 0.96424 0.98409 1.21266 1.01406 0.95359 0.97122 0.93138 0.90616 0.91656 0.77199 0.92123 0.85985 0.86203 0.86456 0.86236 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 9.95 59.85 0.60 1.98 15 2 N -0.61 -12.30 2.93 -126.24 -0.37 -12.67 15 3 C 0.66 16.67 8.10 -86.92 -0.70 15.96 15 4 O -0.61 -17.69 15.41 5.28 0.08 -17.61 15 5 N -0.58 -15.35 5.13 -15.34 -0.08 -15.42 15 6 C -0.29 -8.20 9.68 -14.93 -0.14 -8.34 15 7 H 0.10 3.08 7.16 -52.49 -0.38 2.71 15 8 C 0.02 0.49 5.50 -17.47 -0.10 0.39 15 9 N -0.91 -25.18 13.05 55.49 0.72 -24.46 15 10 Si 0.93 21.49 29.55 -169.99 -5.02 16.46 15 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 14 C 0.19 3.46 4.88 -83.70 -0.41 3.05 15 15 C -0.11 -1.87 9.21 -39.39 -0.36 -2.23 15 16 C -0.11 -1.63 10.04 -39.61 -0.40 -2.03 15 17 C -0.14 -1.76 10.04 -39.55 -0.40 -2.16 15 18 C -0.11 -1.53 10.04 -39.61 -0.40 -1.93 15 19 C -0.13 -2.09 9.82 -39.39 -0.39 -2.47 15 20 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.08 1.26 6.60 -51.93 -0.34 0.92 15 22 H 0.06 0.86 8.05 -51.93 -0.42 0.44 15 23 H 0.39 9.83 5.77 -40.82 -0.24 9.60 15 24 H 0.27 7.02 8.31 -40.82 -0.34 6.69 15 25 H 0.12 2.26 8.06 -52.49 -0.42 1.84 15 26 H 0.12 1.41 8.06 -52.49 -0.42 0.99 15 27 H 0.12 1.17 8.06 -52.49 -0.42 0.74 15 28 H 0.12 1.25 8.06 -52.49 -0.42 0.83 15 29 H 0.12 1.77 8.06 -52.49 -0.42 1.34 15 LS Contribution 258.98 15.07 3.90 3.90 Total: -1.00 -32.48 258.98 -6.51 -38.99 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -3.04 Total: 8.59 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -2.70 Total: 2.22 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.28 Total: -52.55 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.08 Total: -17.61 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.48 -6.51 -38.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264188.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.780 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds