Wall clock time and date at job start Mon Mar 30 2020 02:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.34774 * 119.99663 * 2 1 4 4 O 1.21595 * 119.99719 * 185.32204 * 3 2 1 5 5 N 1.34772 * 120.00331 * 5.31643 * 3 2 1 6 6 C 1.37165 * 120.00386 * 180.02562 * 5 3 2 7 7 H 1.08001 * 119.99830 * 359.97438 * 6 5 3 8 8 C 1.38882 * 120.00469 * 180.02562 * 6 5 3 9 9 N 1.31466 * 119.99687 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00238 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46768 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46995 * 120.00053 * 10 8 6 13 13 H 1.48503 * 109.47106 * 240.00271 * 10 8 6 14 14 C 1.39902 * 120.00201 * 179.97438 * 2 1 3 15 15 C 1.38884 * 120.06622 * 114.54838 * 14 2 1 16 16 C 1.38117 * 119.92328 * 179.97438 * 15 14 2 17 17 C 1.38276 * 120.07400 * 359.97438 * 16 15 14 18 18 C 1.38285 * 120.14468 * 0.28127 * 17 16 15 19 19 C 1.38120 * 120.06771 * 359.48828 * 18 17 16 20 20 H 1.08992 * 109.47047 * 270.00149 * 1 2 3 21 21 H 1.08995 * 109.46830 * 30.01000 * 1 2 3 22 22 H 1.09001 * 109.46345 * 149.99857 * 1 2 3 23 23 H 0.97004 * 120.00254 * 0.02562 * 5 3 2 24 24 H 0.97009 * 119.99744 * 179.97438 * 9 8 6 25 25 H 1.07993 * 120.03752 * 0.02562 * 15 14 2 26 26 H 1.07996 * 119.95798 * 180.02562 * 16 15 14 27 27 H 1.07997 * 119.93118 * 179.97438 * 17 16 15 28 28 H 1.08000 * 119.96827 * 179.72118 * 18 17 16 29 29 H 1.07999 * 120.03459 * 180.24238 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3509 1.1695 -0.0977 5 7 1.4694 2.3319 0.1081 6 6 2.1551 3.5198 0.1076 7 1 3.2316 3.5219 0.0209 8 6 1.4652 4.7200 0.2196 9 7 0.1549 4.7174 0.3266 10 14 2.3991 6.3378 0.2181 11 1 3.8537 6.0695 0.0862 12 1 1.9442 7.1709 -0.9239 13 1 2.1417 7.0591 1.4905 14 6 2.1647 -1.2116 0.0005 15 6 2.9450 -1.5649 -1.0926 16 6 3.6348 -2.7615 -1.0887 17 6 3.5495 -3.6070 0.0021 18 6 2.7692 -3.2605 1.0899 19 6 2.0806 -2.0631 1.0943 20 1 -0.3633 0.0000 1.0276 21 1 -0.3633 0.8899 -0.5140 22 1 -0.3632 -0.8900 -0.5139 23 1 0.5025 2.3301 0.1864 24 1 -0.3269 5.5557 0.4052 25 1 3.0131 -0.9045 -1.9443 26 1 4.2422 -3.0366 -1.9383 27 1 4.0895 -4.5422 0.0025 28 1 2.7010 -3.9251 1.9385 29 1 1.4745 -1.7913 1.9458 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217264188.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:02 Heat of formation + Delta-G solvation = -12.093286 kcal Electronic energy + Delta-G solvation = -14407.135522 eV Core-core repulsion = 11908.861914 eV Total energy + Delta-G solvation = -2498.273608 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.40279 -39.49017 -36.38928 -36.02546 -33.29286 -31.80538 -30.76200 -27.74950 -26.75057 -23.67499 -23.31453 -20.93805 -20.19838 -18.50793 -18.08367 -16.98655 -16.73850 -16.48642 -15.62677 -15.32908 -14.95717 -14.69727 -14.28380 -14.05396 -13.54799 -13.52747 -13.28533 -12.95122 -12.46256 -12.29079 -12.10618 -12.08617 -11.59771 -10.94703 -10.24091 -10.04443 -9.82171 -9.23834 -8.44401 -5.93553 0.40008 0.51303 1.39546 1.41415 1.55941 1.96571 2.26161 2.41344 2.88171 3.24081 3.74744 4.06923 4.13467 4.19599 4.30554 4.49677 4.59429 4.71984 4.75636 4.76502 5.14647 5.34409 5.47458 5.53229 5.61755 5.72517 5.86164 6.24298 6.36922 6.68462 7.11866 7.60559 8.12767 8.75207 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.056301 B = 0.006741 C = 0.006341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.203131 B = 4152.556235 C = 4414.531909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.601 5.601 3 C 0.653 3.347 4 O -0.656 6.656 5 N -0.588 5.588 6 C -0.321 4.321 7 H 0.078 0.922 8 C -0.017 4.017 9 N -0.928 5.928 10 Si 0.998 3.002 11 H -0.274 1.274 12 H -0.270 1.270 13 H -0.270 1.270 14 C 0.144 3.856 15 C -0.133 4.133 16 C -0.113 4.113 17 C -0.124 4.124 18 C -0.107 4.107 19 C -0.139 4.139 20 H 0.066 0.934 21 H 0.064 0.936 22 H 0.096 0.904 23 H 0.397 0.603 24 H 0.276 0.724 25 H 0.096 0.904 26 H 0.145 0.855 27 H 0.159 0.841 28 H 0.158 0.842 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.627 -14.249 0.166 14.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.335 5.335 3 C 0.355 3.645 4 O -0.541 6.541 5 N -0.231 5.231 6 C -0.451 4.451 7 H 0.096 0.904 8 C -0.215 4.215 9 N -0.569 5.569 10 Si 0.821 3.179 11 H -0.199 1.199 12 H -0.195 1.195 13 H -0.195 1.195 14 C 0.053 3.947 15 C -0.154 4.154 16 C -0.132 4.132 17 C -0.142 4.142 18 C -0.125 4.125 19 C -0.159 4.159 20 H 0.085 0.915 21 H 0.082 0.918 22 H 0.114 0.886 23 H 0.233 0.767 24 H 0.086 0.914 25 H 0.115 0.885 26 H 0.163 0.837 27 H 0.177 0.823 28 H 0.175 0.825 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.025 -14.013 0.114 14.013 hybrid contribution -0.291 1.236 -0.100 1.274 sum -0.266 -12.776 0.014 12.779 Atomic orbital electron populations 1.21869 0.77314 1.03770 1.02825 1.44453 1.07168 1.02503 1.79377 1.16087 0.85073 0.81083 0.82218 1.90704 1.14086 1.86683 1.62631 1.41096 1.09410 1.03083 1.69506 1.19604 0.92755 0.83186 1.49550 0.90398 1.26003 0.96691 1.02133 0.96694 1.69709 1.07081 1.29169 1.50987 0.84806 0.77878 0.76877 0.78337 1.19864 1.19536 1.19535 1.17745 0.96522 0.85740 0.94726 1.21355 0.99022 0.97470 0.97521 1.21314 0.98665 0.93033 1.00166 1.21541 0.99004 1.00643 0.93014 1.21384 0.95914 0.95588 0.99617 1.21438 1.02069 0.95990 0.96386 0.91522 0.91753 0.88561 0.76700 0.91418 0.88548 0.83724 0.82342 0.82454 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.68 9.95 127.77 1.27 3.95 15 2 N -0.60 -24.99 2.93 -671.56 -1.97 -26.96 15 3 C 0.65 34.66 8.10 179.06 1.45 36.11 15 4 O -0.66 -39.84 15.41 -4.01 -0.06 -39.90 15 5 N -0.59 -32.32 5.13 -320.72 -1.65 -33.96 15 6 C -0.32 -19.07 9.68 84.01 0.81 -18.25 15 7 H 0.08 4.92 7.16 -2.91 -0.02 4.90 15 8 C -0.02 -0.91 5.50 84.90 0.47 -0.44 15 9 N -0.93 -51.36 13.05 21.65 0.28 -51.08 15 10 Si 1.00 44.17 29.55 68.60 2.03 46.19 15 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 15 12 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 13 H -0.27 -11.39 7.11 99.48 0.71 -10.69 15 14 C 0.14 5.39 4.88 38.16 0.19 5.58 15 15 C -0.13 -4.80 9.21 22.40 0.21 -4.60 15 16 C -0.11 -3.06 10.04 22.25 0.22 -2.83 15 17 C -0.12 -2.73 10.04 22.29 0.22 -2.50 15 18 C -0.11 -2.47 10.04 22.25 0.22 -2.24 15 19 C -0.14 -4.19 9.82 22.39 0.22 -3.97 15 20 H 0.07 1.91 8.14 -2.39 -0.02 1.89 15 21 H 0.06 2.18 6.60 -2.39 -0.02 2.17 15 22 H 0.10 2.45 8.05 -2.39 -0.02 2.43 15 23 H 0.40 20.54 5.77 -92.70 -0.54 20.01 15 24 H 0.28 14.24 8.31 -92.70 -0.77 13.47 15 25 H 0.10 3.83 8.06 -2.91 -0.02 3.81 15 26 H 0.14 3.07 8.06 -2.91 -0.02 3.04 15 27 H 0.16 2.23 8.06 -2.91 -0.02 2.21 15 28 H 0.16 2.46 8.06 -2.91 -0.02 2.43 15 29 H 0.13 3.56 8.06 -2.91 -0.02 3.53 15 Total: -1.00 -72.50 258.98 4.54 -67.96 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.62 Total: 26.96 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 5.29 Total: 10.79 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -3.33 Total: -112.00 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -0.06 Total: -39.90 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -72.50 4.54 -67.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217264188.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.863 kcal (2) G-P(sol) polarization free energy of solvation -72.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds