Wall clock time and date at job start Mon Mar 30 2020 02:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46903 * 110.99844 * 2 1 4 4 C 1.50699 * 109.46909 * 293.95085 * 3 2 1 5 5 H 1.07995 * 120.00340 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99605 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00034 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99944 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47183 * 59.99609 * 8 6 4 10 10 H 1.48500 * 109.47040 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46929 * 299.99800 * 8 6 4 12 12 C 1.38096 * 110.99576 * 123.95404 * 2 1 3 13 13 N 1.32430 * 119.85366 * 295.30993 * 12 2 1 14 14 C 1.31830 * 121.80014 * 179.97438 * 13 12 2 15 15 C 1.38468 * 121.29514 * 0.02562 * 14 13 12 16 16 C 1.38210 * 119.54289 * 359.97438 * 15 14 13 17 17 C 1.40301 * 118.34461 * 0.02562 * 16 15 14 18 18 C 1.46643 * 120.63761 * 179.97438 * 17 16 15 19 19 O 1.21312 * 120.00423 * 5.24438 * 18 17 16 20 20 H 1.08993 * 109.47184 * 301.51534 * 1 2 3 21 21 H 1.09008 * 109.47059 * 61.51273 * 1 2 3 22 22 H 1.09004 * 109.47298 * 181.50887 * 1 2 3 23 23 H 1.08992 * 109.47042 * 53.95166 * 3 2 1 24 24 H 1.09000 * 109.46473 * 173.95616 * 3 2 1 25 25 H 0.97003 * 120.00060 * 180.02562 * 7 6 4 26 26 H 1.08010 * 119.34892 * 180.02562 * 14 13 12 27 27 H 1.08003 * 120.22468 * 179.72285 * 15 14 13 28 28 H 1.07995 * 120.82227 * 179.97438 * 16 15 14 29 29 H 1.08002 * 119.99781 * 185.24576 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0277 3.3491 -1.5289 7 7 2.7128 4.0015 -0.6153 8 14 1.5828 4.1869 -3.1381 9 1 0.1055 4.2243 -3.2848 10 1 2.1150 5.5732 -3.1381 11 1 2.1736 3.4293 -4.2705 12 6 1.9638 -0.7201 1.0694 13 7 1.7416 -0.3008 2.3058 14 6 2.1954 -0.9584 3.3544 15 6 2.9296 -2.1235 3.2104 16 6 3.1936 -2.6104 1.9441 17 6 2.7025 -1.8971 0.8403 18 6 2.9536 -2.3679 -0.5256 19 8 3.5081 -3.4313 -0.7084 20 1 -0.3633 0.5371 0.8760 21 1 -0.3634 0.4902 -0.9033 22 1 -0.3634 -1.0273 0.0271 23 1 1.5611 1.9273 0.8308 24 1 3.0797 1.3443 0.1082 25 1 2.9874 4.9176 -0.7773 26 1 1.9904 -0.5808 4.3454 27 1 3.2968 -2.6460 4.0814 28 1 3.7645 -3.5170 1.8078 29 1 2.6448 -1.7679 -1.3689 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234268137.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:19 Heat of formation + Delta-G solvation = -5.594503 kcal Electronic energy + Delta-G solvation = -14444.553669 eV Core-core repulsion = 11946.561870 eV Total energy + Delta-G solvation = -2497.991799 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.65155 -39.62598 -37.94323 -34.73449 -33.49389 -31.73110 -29.28119 -27.10930 -26.24696 -24.68349 -22.31357 -22.19088 -18.81163 -18.20625 -17.91429 -17.10522 -16.77918 -16.06720 -15.89984 -15.35738 -15.05435 -14.90385 -14.32518 -14.16905 -14.00543 -13.47650 -13.14752 -12.85964 -12.62569 -12.41667 -12.05861 -11.48455 -11.02337 -10.93094 -10.63852 -10.56634 -9.93619 -9.45606 -8.20504 -6.31774 -0.53766 0.20122 1.45369 1.45800 1.48465 1.56070 2.40754 2.76657 2.89116 3.13988 3.31341 3.65279 3.89739 4.01093 4.19031 4.47578 4.56904 4.57478 4.68196 4.94464 4.99900 5.12185 5.16940 5.21020 5.50244 5.67296 5.98225 6.01067 6.35874 6.59312 6.81564 6.93269 7.38091 8.91067 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.034502 B = 0.007998 C = 0.007225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.350730 B = 3499.913550 C = 3874.736396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.503 5.503 3 C 0.225 3.775 4 C -0.527 4.527 5 H 0.075 0.925 6 C 0.004 3.996 7 N -0.936 5.936 8 Si 0.973 3.027 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.266 1.266 12 C 0.338 3.662 13 N -0.556 5.556 14 C 0.135 3.865 15 C -0.182 4.182 16 C -0.019 4.019 17 C -0.240 4.240 18 C 0.410 3.590 19 O -0.497 6.497 20 H 0.020 0.980 21 H 0.080 0.920 22 H 0.074 0.926 23 H -0.023 1.023 24 H -0.006 1.006 25 H 0.265 0.735 26 H 0.187 0.813 27 H 0.184 0.816 28 H 0.162 0.838 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.667 -11.119 5.904 12.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.226 5.226 3 C 0.101 3.899 4 C -0.565 4.565 5 H 0.093 0.907 6 C -0.195 4.195 7 N -0.576 5.576 8 Si 0.797 3.203 9 H -0.189 1.189 10 H -0.213 1.213 11 H -0.190 1.190 12 C 0.110 3.890 13 N -0.269 5.269 14 C -0.024 4.024 15 C -0.201 4.201 16 C -0.045 4.045 17 C -0.245 4.245 18 C 0.272 3.728 19 O -0.373 6.373 20 H 0.039 0.961 21 H 0.098 0.902 22 H 0.093 0.907 23 H -0.006 1.006 24 H 0.012 0.988 25 H 0.073 0.927 26 H 0.204 0.796 27 H 0.201 0.799 28 H 0.179 0.821 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.636 -10.965 5.507 12.378 hybrid contribution 0.138 0.725 0.072 0.742 sum -1.497 -10.239 5.579 11.756 Atomic orbital electron populations 1.22193 0.84620 1.01299 1.01597 1.60097 1.10036 1.17026 1.35444 1.19291 0.92993 0.81577 0.96072 1.21426 1.35431 0.97610 1.02010 0.90659 1.25934 0.94800 0.98004 1.00735 1.70105 1.39140 1.11948 1.36366 0.85381 0.78967 0.76983 0.78965 1.18939 1.21294 1.19035 1.20487 0.90606 0.90059 0.87857 1.67978 1.23773 1.34502 1.00625 1.23518 0.90228 0.90860 0.97814 1.22478 1.00788 0.97987 0.98855 1.22140 0.93014 0.97931 0.91414 1.21665 1.05841 0.98408 0.98597 1.23972 0.72207 0.84738 0.91921 1.90449 1.33778 1.23948 1.89130 0.96138 0.90155 0.90701 1.00552 0.98761 0.92671 0.79605 0.79883 0.82064 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.87 9.17 127.69 1.17 3.04 15 2 N -0.50 -21.51 3.82 -730.19 -2.79 -24.30 15 3 C 0.23 11.99 4.44 85.56 0.38 12.37 15 4 C -0.53 -28.87 8.54 25.60 0.22 -28.65 15 5 H 0.08 3.90 7.10 -2.91 -0.02 3.88 15 6 C 0.00 0.20 5.46 84.65 0.46 0.66 15 7 N -0.94 -56.11 13.29 21.45 0.28 -55.83 15 8 Si 0.97 43.17 29.54 68.60 2.03 45.20 15 9 H -0.26 -11.19 7.11 99.48 0.71 -10.48 15 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 15 11 H -0.27 -11.32 7.11 99.48 0.71 -10.61 15 12 C 0.34 13.03 5.27 133.78 0.70 13.73 15 13 N -0.56 -20.66 9.76 -192.32 -1.88 -22.54 15 14 C 0.13 3.55 11.16 84.75 0.95 4.50 15 15 C -0.18 -3.84 10.08 22.32 0.23 -3.61 15 16 C -0.02 -0.49 9.71 22.77 0.22 -0.27 15 17 C -0.24 -7.95 5.90 -19.95 -0.12 -8.06 15 18 C 0.41 13.57 11.16 70.02 0.78 14.35 15 19 O -0.50 -17.48 17.25 -3.13 -0.05 -17.53 15 20 H 0.02 0.81 8.04 -2.39 -0.02 0.79 15 21 H 0.08 3.06 6.90 -2.38 -0.02 3.05 15 22 H 0.07 2.36 8.11 -2.38 -0.02 2.34 15 23 H -0.02 -1.39 8.05 -2.39 -0.02 -1.41 15 24 H -0.01 -0.34 8.05 -2.39 -0.02 -0.36 15 25 H 0.26 14.97 8.31 -92.71 -0.77 14.20 15 26 H 0.19 3.50 8.06 -2.91 -0.02 3.47 15 27 H 0.18 2.14 8.06 -2.91 -0.02 2.12 15 28 H 0.16 3.47 7.74 -2.91 -0.02 3.45 15 29 H 0.12 4.03 7.60 -2.91 -0.02 4.01 15 Total: -1.00 -68.15 261.87 3.73 -64.42 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: 1.14 Total: 2.53 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 4.99 Total: 8.05 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -4.38 Total: -102.66 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.05 Total: -17.53 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -68.15 3.73 -64.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234268137.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.829 kcal (2) G-P(sol) polarization free energy of solvation -68.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds