Wall clock time and date at job start Mon Mar 30 2020 02:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34779 * 120.00161 * 2 1 4 4 O 1.21787 * 120.00588 * 180.02562 * 3 2 1 5 5 C 1.41720 * 119.99827 * 0.02562 * 3 2 1 6 6 H 1.08007 * 119.99665 * 359.97438 * 5 3 2 7 7 C 1.40138 * 120.00194 * 179.97438 * 5 3 2 8 8 N 1.30629 * 119.99809 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00225 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46738 * 89.99914 * 9 7 5 11 11 H 1.48497 * 109.47219 * 210.00109 * 9 7 5 12 12 H 1.48502 * 109.47264 * 330.00650 * 9 7 5 13 13 C 1.39486 * 120.00369 * 180.02562 * 2 1 3 14 14 C 1.38923 * 120.12422 * 89.97309 * 13 2 1 15 15 C 1.38086 * 119.98671 * 180.02562 * 14 13 2 16 16 C 1.38459 * 120.24576 * 359.71605 * 15 14 13 17 17 C 1.38175 * 120.25224 * 0.56540 * 16 15 14 18 18 C 1.38762 * 120.00606 * 359.43851 * 17 16 15 19 19 N 1.39623 * 120.12564 * 180.30344 * 18 17 16 20 20 H 1.09002 * 109.46590 * 269.99590 * 1 2 3 21 21 H 1.08995 * 109.47631 * 29.99605 * 1 2 3 22 22 H 1.08999 * 109.47323 * 149.99910 * 1 2 3 23 23 H 0.96997 * 119.99588 * 179.97438 * 8 7 5 24 24 H 1.07999 * 120.00802 * 0.02562 * 14 13 2 25 25 H 1.08005 * 119.87629 * 179.97438 * 15 14 13 26 26 H 1.08000 * 119.87807 * 180.27939 * 16 15 14 27 27 H 1.08002 * 120.00083 * 179.72308 * 17 16 15 28 28 H 0.97003 * 119.99404 * 359.97438 * 19 18 17 29 29 H 0.96998 * 120.00205 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3568 1.1673 -0.0005 5 6 1.4303 2.3945 0.0005 6 1 0.3502 2.3945 0.0005 7 6 2.1309 3.6082 0.0011 8 7 3.4372 3.6082 0.0006 9 14 1.1969 5.2259 0.0011 10 1 0.9489 5.6542 1.4012 11 1 1.9997 6.2610 -0.6984 12 1 -0.1004 5.0485 -0.6994 13 6 2.1625 -1.2079 -0.0005 14 6 2.5106 -1.8115 -1.2024 15 6 3.2007 -3.0076 -1.1996 16 6 3.5531 -3.6066 -0.0021 17 6 3.2069 -3.0180 1.1991 18 6 2.5135 -1.8162 1.2086 19 7 2.1679 -1.2160 2.4210 20 1 -0.3632 -0.0001 1.0277 21 1 -0.3634 0.8899 -0.5137 22 1 -0.3634 -0.8900 -0.5138 23 1 3.9221 4.4483 0.0006 24 1 2.2417 -1.3453 -2.1387 25 1 3.4701 -3.4754 -2.1351 26 1 4.0968 -4.5398 -0.0069 27 1 3.4800 -3.4911 2.1308 28 1 2.4123 -1.6396 3.2587 29 1 1.6828 -0.3761 2.4255 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238285012.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:08 Heat of formation + Delta-G solvation = -0.992866 kcal Electronic energy + Delta-G solvation = -14783.498493 eV Core-core repulsion = 12285.706236 eV Total energy + Delta-G solvation = -2497.792258 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.26355 -36.99833 -34.01561 -33.61939 -32.45920 -29.68242 -28.03671 -26.35801 -25.26250 -22.15371 -21.45856 -19.44001 -16.76022 -16.40324 -16.23291 -15.73345 -15.28766 -14.07773 -13.90628 -13.78888 -13.13966 -12.86669 -12.54929 -12.23176 -11.60546 -11.51423 -11.32967 -11.10250 -10.91964 -10.64846 -10.35191 -10.13172 -10.06561 -8.90985 -8.13894 -7.58035 -7.33641 -6.84923 -6.24884 -4.78104 2.02978 2.25295 3.08842 3.16436 3.19651 4.04308 4.41585 4.50248 4.54701 4.63606 5.46930 5.58200 5.78987 5.88412 6.04018 6.09051 6.25998 6.38139 6.50494 6.54797 6.80307 7.10667 7.25423 7.35931 7.40964 7.74563 8.03058 8.13708 8.36101 8.60458 8.93149 9.44854 10.52252 10.79386 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.045988 B = 0.008320 C = 0.008211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.710155 B = 3364.660237 C = 3409.221026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.611 5.611 3 C 0.556 3.444 4 O -0.571 6.571 5 C -0.545 4.545 6 H 0.072 0.928 7 C 0.089 3.911 8 N -0.753 5.753 9 Si 0.907 3.093 10 H -0.271 1.271 11 H -0.279 1.279 12 H -0.264 1.264 13 C 0.107 3.893 14 C -0.075 4.075 15 C -0.180 4.180 16 C -0.087 4.087 17 C -0.205 4.205 18 C 0.217 3.783 19 N -0.869 5.869 20 H 0.030 0.970 21 H 0.074 0.926 22 H 0.042 0.958 23 H 0.270 0.730 24 H 0.115 0.885 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.389 0.611 29 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.825 -8.298 1.713 9.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.347 5.347 3 C 0.365 3.635 4 O -0.453 6.453 5 C -0.581 4.581 6 H 0.090 0.910 7 C -0.133 4.133 8 N -0.381 5.381 9 Si 0.732 3.268 10 H -0.197 1.197 11 H -0.204 1.204 12 H -0.188 1.188 13 C 0.011 3.989 14 C -0.095 4.095 15 C -0.201 4.201 16 C -0.106 4.106 17 C -0.229 4.229 18 C 0.109 3.891 19 N -0.407 5.407 20 H 0.048 0.952 21 H 0.093 0.907 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.133 0.867 25 H 0.129 0.871 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.216 0.784 29 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -3.983 -8.150 1.677 9.225 hybrid contribution -0.568 0.994 0.351 1.197 sum -4.551 -7.156 2.028 8.720 Atomic orbital electron populations 1.21443 0.81636 1.01291 0.99573 1.45618 1.04800 1.03592 1.80723 1.17009 0.87206 0.81761 0.77538 1.90672 1.13782 1.85854 1.54997 1.20163 0.94299 0.90029 1.53596 0.90989 1.25776 0.94545 1.00502 0.92498 1.70039 1.07235 1.27446 1.33348 0.86376 0.80255 0.81274 0.78904 1.19677 1.20385 1.18760 1.17148 1.01557 0.89607 0.90541 1.21232 0.96543 0.94438 0.97313 1.20676 1.04535 0.97499 0.97410 1.20711 0.98817 0.98957 0.92095 1.20351 1.07269 0.97096 0.98142 1.18234 0.92645 0.91445 0.86741 1.42324 1.65922 1.28154 1.04322 0.95179 0.90733 0.93900 0.91956 0.86669 0.87061 0.86975 0.87004 0.78376 0.76831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.97 10.11 59.84 0.61 2.58 15 2 N -0.61 -14.28 2.06 -123.84 -0.26 -14.54 15 3 C 0.56 15.87 7.42 -14.93 -0.11 15.76 15 4 O -0.57 -18.82 14.85 5.11 0.08 -18.74 15 5 C -0.55 -15.07 8.58 -37.54 -0.32 -15.39 15 6 H 0.07 1.80 5.88 -52.48 -0.31 1.49 15 7 C 0.09 2.43 5.50 -17.35 -0.10 2.34 15 8 N -0.75 -22.36 11.73 55.55 0.65 -21.71 15 9 Si 0.91 19.68 29.56 -169.99 -5.02 14.66 15 10 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 12 H -0.26 -5.51 7.11 56.52 0.40 -5.11 15 13 C 0.11 2.36 4.47 -83.53 -0.37 1.99 15 14 C -0.07 -1.53 9.97 -39.38 -0.39 -1.92 15 15 C -0.18 -3.13 10.04 -39.56 -0.40 -3.53 15 16 C -0.09 -1.41 10.04 -39.52 -0.40 -1.81 15 17 C -0.21 -3.53 9.89 -39.41 -0.39 -3.92 15 18 C 0.22 4.31 6.78 -83.52 -0.57 3.74 15 19 N -0.87 -15.46 9.07 32.55 0.30 -15.17 15 20 H 0.03 0.52 8.14 -51.93 -0.42 0.10 15 21 H 0.07 1.42 6.08 -51.93 -0.32 1.10 15 22 H 0.04 0.71 8.05 -51.93 -0.42 0.29 15 23 H 0.27 7.25 8.29 -40.82 -0.34 6.91 15 24 H 0.12 2.31 8.06 -52.49 -0.42 1.88 15 25 H 0.11 1.62 8.06 -52.48 -0.42 1.20 15 26 H 0.11 1.45 8.06 -52.49 -0.42 1.03 15 27 H 0.11 1.61 8.06 -52.49 -0.42 1.19 15 28 H 0.39 5.55 8.84 -40.82 -0.36 5.19 15 29 H 0.40 7.73 8.12 -40.82 -0.33 7.40 15 LS Contribution 257.01 15.07 3.87 3.87 Total: -1.00 -34.21 257.01 -5.81 -40.01 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -2.98 Total: 11.78 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -2.44 Total: -0.17 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.69 Total: -51.41 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.08 Total: -18.74 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -34.21 -5.81 -40.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238285012.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.019 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds