Wall clock time and date at job start Mon Mar 30 2020 02:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34779 * 120.00161 * 2 1 4 4 O 1.21787 * 120.00588 * 180.02562 * 3 2 1 5 5 C 1.41720 * 119.99827 * 0.02562 * 3 2 1 6 6 H 1.08007 * 119.99665 * 359.97438 * 5 3 2 7 7 C 1.40138 * 120.00194 * 179.97438 * 5 3 2 8 8 N 1.30629 * 119.99809 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00225 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46738 * 89.99914 * 9 7 5 11 11 H 1.48497 * 109.47219 * 210.00109 * 9 7 5 12 12 H 1.48502 * 109.47264 * 330.00650 * 9 7 5 13 13 C 1.39486 * 120.00369 * 180.02562 * 2 1 3 14 14 C 1.38923 * 120.12422 * 89.97309 * 13 2 1 15 15 C 1.38086 * 119.98671 * 180.02562 * 14 13 2 16 16 C 1.38459 * 120.24576 * 359.71605 * 15 14 13 17 17 C 1.38175 * 120.25224 * 0.56540 * 16 15 14 18 18 C 1.38762 * 120.00606 * 359.43851 * 17 16 15 19 19 N 1.39623 * 120.12564 * 180.30344 * 18 17 16 20 20 H 1.09002 * 109.46590 * 269.99590 * 1 2 3 21 21 H 1.08995 * 109.47631 * 29.99605 * 1 2 3 22 22 H 1.08999 * 109.47323 * 149.99910 * 1 2 3 23 23 H 0.96997 * 119.99588 * 179.97438 * 8 7 5 24 24 H 1.07999 * 120.00802 * 0.02562 * 14 13 2 25 25 H 1.08005 * 119.87629 * 179.97438 * 15 14 13 26 26 H 1.08000 * 119.87807 * 180.27939 * 16 15 14 27 27 H 1.08002 * 120.00083 * 179.72308 * 17 16 15 28 28 H 0.97003 * 119.99404 * 359.97438 * 19 18 17 29 29 H 0.96998 * 120.00205 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3568 1.1673 -0.0005 5 6 1.4303 2.3945 0.0005 6 1 0.3502 2.3945 0.0005 7 6 2.1309 3.6082 0.0011 8 7 3.4372 3.6082 0.0006 9 14 1.1969 5.2259 0.0011 10 1 0.9489 5.6542 1.4012 11 1 1.9997 6.2610 -0.6984 12 1 -0.1004 5.0485 -0.6994 13 6 2.1625 -1.2079 -0.0005 14 6 2.5106 -1.8115 -1.2024 15 6 3.2007 -3.0076 -1.1996 16 6 3.5531 -3.6066 -0.0021 17 6 3.2069 -3.0180 1.1991 18 6 2.5135 -1.8162 1.2086 19 7 2.1679 -1.2160 2.4210 20 1 -0.3632 -0.0001 1.0277 21 1 -0.3634 0.8899 -0.5137 22 1 -0.3634 -0.8900 -0.5138 23 1 3.9221 4.4483 0.0006 24 1 2.2417 -1.3453 -2.1387 25 1 3.4701 -3.4754 -2.1351 26 1 4.0968 -4.5398 -0.0069 27 1 3.4800 -3.4911 2.1308 28 1 2.4123 -1.6396 3.2587 29 1 1.6828 -0.3761 2.4255 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238285012.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:08 Heat of formation + Delta-G solvation = -25.135231 kcal Electronic energy + Delta-G solvation = -14784.545384 eV Core-core repulsion = 12285.706236 eV Total energy + Delta-G solvation = -2498.839149 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.87618 -38.82785 -35.76544 -35.15819 -34.58936 -31.20974 -29.54314 -28.32874 -26.91472 -23.79815 -22.95659 -21.19211 -18.55833 -18.01035 -17.78231 -17.61362 -16.97638 -15.88710 -15.44743 -15.30671 -14.62961 -14.43831 -14.31665 -13.76818 -13.47071 -13.20672 -13.13895 -12.74341 -12.48675 -12.21544 -12.09341 -11.96063 -11.45968 -10.94368 -9.81634 -9.55117 -9.19810 -8.36482 -8.22791 -6.94078 0.57918 0.82187 1.39278 1.40152 1.56097 2.23023 2.44562 2.90226 3.00023 3.18659 3.68268 4.12422 4.30744 4.49681 4.63822 4.66848 4.81757 4.89063 4.95129 5.14312 5.32241 5.41998 5.70299 5.77900 5.86911 6.05648 6.11173 6.49799 6.82286 6.85443 7.04496 7.47052 8.49501 8.71131 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.045988 B = 0.008320 C = 0.008211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.710155 B = 3364.660237 C = 3409.221026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.608 5.608 3 C 0.543 3.457 4 O -0.629 6.629 5 C -0.569 4.569 6 H 0.093 0.907 7 C 0.032 3.968 8 N -0.809 5.809 9 Si 0.997 3.003 10 H -0.260 1.260 11 H -0.275 1.275 12 H -0.247 1.247 13 C 0.061 3.939 14 C -0.098 4.098 15 C -0.181 4.181 16 C -0.078 4.078 17 C -0.204 4.204 18 C 0.197 3.803 19 N -0.866 5.866 20 H 0.046 0.954 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.275 0.725 24 H 0.103 0.897 25 H 0.140 0.860 26 H 0.156 0.844 27 H 0.144 0.856 28 H 0.405 0.595 29 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.821 -9.155 2.105 11.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.342 5.342 3 C 0.353 3.647 4 O -0.517 6.517 5 C -0.604 4.604 6 H 0.111 0.889 7 C -0.185 4.185 8 N -0.437 5.437 9 Si 0.816 3.184 10 H -0.185 1.185 11 H -0.200 1.200 12 H -0.170 1.170 13 C -0.034 4.034 14 C -0.118 4.118 15 C -0.201 4.201 16 C -0.096 4.096 17 C -0.227 4.227 18 C 0.089 3.911 19 N -0.404 5.404 20 H 0.064 0.936 21 H 0.089 0.911 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.121 0.879 25 H 0.158 0.842 26 H 0.173 0.827 27 H 0.161 0.839 28 H 0.235 0.765 29 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.027 -9.074 2.084 10.581 hybrid contribution -0.238 1.101 0.223 1.148 sum -5.265 -7.973 2.307 9.829 Atomic orbital electron populations 1.21588 0.79322 1.02184 1.00877 1.45279 1.06282 1.03105 1.79502 1.17369 0.86733 0.83598 0.77049 1.90608 1.16157 1.87247 1.57651 1.20683 0.95512 0.90537 1.53681 0.88856 1.27038 0.95373 1.05110 0.91019 1.70217 1.09769 1.28995 1.34758 0.85036 0.78883 0.74977 0.79523 1.18453 1.19960 1.16997 1.17507 1.03995 0.89744 0.92182 1.21344 0.97986 0.96048 0.96457 1.21034 1.03256 0.96334 0.99482 1.21231 0.97430 0.99938 0.91035 1.20797 1.05833 0.95960 1.00122 1.18481 0.93401 0.92630 0.86541 1.42275 1.65731 1.27739 1.04697 0.93551 0.91121 0.91636 0.91528 0.87857 0.84173 0.82669 0.83857 0.76538 0.77932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.86 10.11 127.77 1.29 5.15 15 2 N -0.61 -29.02 2.06 -663.89 -1.37 -30.39 15 3 C 0.54 32.05 7.42 85.10 0.63 32.68 15 4 O -0.63 -43.41 14.85 -4.63 -0.07 -43.48 15 5 C -0.57 -31.95 8.58 23.59 0.20 -31.74 15 6 H 0.09 4.65 5.88 -2.91 -0.02 4.63 15 7 C 0.03 1.76 5.50 85.33 0.47 2.23 15 8 N -0.81 -49.58 11.73 21.85 0.26 -49.32 15 9 Si 1.00 40.33 29.56 68.60 2.03 42.36 15 10 H -0.26 -9.97 7.11 99.48 0.71 -9.27 15 11 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 12 H -0.25 -9.23 7.11 99.48 0.71 -8.52 15 13 C 0.06 2.73 4.47 38.47 0.17 2.90 15 14 C -0.10 -4.03 9.97 22.40 0.22 -3.81 15 15 C -0.18 -5.94 10.04 22.29 0.22 -5.71 15 16 C -0.08 -2.27 10.04 22.31 0.22 -2.05 15 17 C -0.20 -6.52 9.89 22.38 0.22 -6.29 15 18 C 0.20 7.72 6.78 38.41 0.26 7.98 15 19 N -0.87 -30.55 9.07 -50.93 -0.46 -31.01 15 20 H 0.05 1.57 8.14 -2.39 -0.02 1.55 15 21 H 0.07 2.67 6.08 -2.39 -0.01 2.65 15 22 H 0.06 2.13 8.05 -2.39 -0.02 2.11 15 23 H 0.27 15.23 8.29 -92.71 -0.77 14.46 15 24 H 0.10 4.31 8.06 -2.91 -0.02 4.29 15 25 H 0.14 3.70 8.06 -2.91 -0.02 3.67 15 26 H 0.16 3.19 8.06 -2.91 -0.02 3.17 15 27 H 0.14 3.60 8.06 -2.91 -0.02 3.57 15 28 H 0.40 11.13 8.84 -92.71 -0.82 10.31 15 29 H 0.39 15.32 8.12 -92.71 -0.75 14.57 15 Total: -1.00 -77.34 257.01 3.92 -73.42 By element: Atomic # 1 Polarization: 37.47 SS G_CDS: -0.38 Total: 37.09 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 3.92 Total: 1.33 kcal Atomic # 7 Polarization: -109.14 SS G_CDS: -1.57 Total: -110.72 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -0.07 Total: -43.48 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -77.34 3.92 -73.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238285012.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.284 kcal (2) G-P(sol) polarization free energy of solvation -77.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds