Wall clock time and date at job start Mon Mar 30 2020 02:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34779 * 120.00550 * 2 1 4 4 O 1.21274 * 120.00472 * 185.08559 * 3 2 1 5 5 C 1.50703 * 119.99689 * 5.07941 * 3 2 1 6 6 C 1.50691 * 109.47140 * 179.97438 * 5 3 2 7 7 H 1.08003 * 120.00356 * 0.02562 * 6 5 3 8 8 C 1.37880 * 120.00004 * 180.02562 * 6 5 3 9 9 N 1.31516 * 120.00239 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00149 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47123 * 60.00359 * 10 8 6 12 12 H 1.48502 * 109.47362 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47265 * 300.00373 * 10 8 6 14 14 C 1.39412 * 119.99973 * 180.02562 * 2 1 3 15 15 C 1.39032 * 119.69235 * 265.03134 * 14 2 1 16 16 C 1.38366 * 119.09956 * 179.97438 * 15 14 2 17 17 C 1.38827 * 118.49317 * 0.02562 * 16 15 14 18 18 C 1.38074 * 119.31533 * 0.25620 * 17 16 15 19 19 N 1.31940 * 120.84254 * 359.49014 * 18 17 16 20 20 H 1.09005 * 109.46525 * 270.00063 * 1 2 3 21 21 H 1.09005 * 109.47137 * 29.99286 * 1 2 3 22 22 H 1.08993 * 109.47685 * 149.99879 * 1 2 3 23 23 H 1.09005 * 109.47039 * 300.00512 * 5 3 2 24 24 H 1.09002 * 109.46693 * 60.00234 * 5 3 2 25 25 H 0.96995 * 120.00245 * 179.97438 * 9 8 6 26 26 H 1.08008 * 120.45386 * 0.02562 * 15 14 2 27 27 H 1.08000 * 120.75073 * 180.02562 * 16 15 14 28 28 H 1.08008 * 120.34394 * 179.97438 * 17 16 15 29 29 H 1.07998 * 119.57824 * 179.74980 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3481 1.1692 -0.0931 5 6 1.3899 2.4697 0.1156 6 6 2.3683 3.6156 0.0918 7 1 3.4267 3.4203 0.0016 8 6 1.9124 4.9135 0.1853 9 7 0.6236 5.1514 0.2956 10 14 3.1251 6.3339 0.1551 11 1 3.8827 6.3110 -1.1219 12 1 2.3870 7.6175 0.2691 13 1 4.0697 6.2027 1.2935 14 6 2.1620 -1.2073 -0.0005 15 6 2.5969 -1.7520 1.2024 16 6 3.2872 -2.9511 1.1877 17 6 3.5200 -3.5663 -0.0349 18 6 3.0642 -2.9656 -1.1916 19 7 2.4044 -1.8239 -1.1462 20 1 -0.3632 0.0000 1.0277 21 1 -0.3634 0.8901 -0.5137 22 1 -0.3634 -0.8899 -0.5138 23 1 0.6969 2.5657 -0.7203 24 1 0.8335 2.4869 1.0527 25 1 0.3029 6.0644 0.3617 26 1 2.3980 -1.2464 2.1359 27 1 3.6369 -3.3983 2.1065 28 1 4.0560 -4.5028 -0.0812 29 1 3.2465 -3.4384 -2.1453 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258699743.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:10 Heat of formation + Delta-G solvation = 8.463654 kcal Electronic energy + Delta-G solvation = -14311.361452 eV Core-core repulsion = 11813.979260 eV Total energy + Delta-G solvation = -2497.382192 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.39163 -38.45073 -34.96695 -32.98598 -32.35561 -30.65901 -28.65328 -26.33954 -24.29886 -23.42558 -22.36859 -19.24813 -17.07503 -16.51326 -16.34526 -15.85484 -15.65415 -14.59374 -14.35046 -14.19468 -13.43504 -13.14135 -12.75449 -12.58662 -12.16759 -12.02058 -11.82049 -11.22706 -10.81698 -10.62942 -9.98546 -9.84124 -9.59573 -9.27783 -9.00730 -8.71485 -8.43627 -8.34324 -6.06657 -4.06422 1.13841 1.35438 3.28090 3.37870 3.39727 3.46850 3.56442 3.85168 4.47473 4.71687 4.85979 5.10534 5.18058 5.22399 5.31353 5.55378 5.74918 5.79218 5.98041 6.05732 6.13265 6.17609 6.50380 7.08356 7.26861 7.32791 7.80672 7.95843 8.11490 8.30336 9.03056 9.10280 9.58414 11.05585 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.051886 B = 0.006609 C = 0.006255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.513555 B = 4235.436980 C = 4475.230413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.591 5.591 3 C 0.524 3.476 4 O -0.531 6.531 5 C 0.013 3.987 6 C -0.511 4.511 7 H 0.074 0.926 8 C 0.057 3.943 9 N -0.900 5.900 10 Si 0.903 3.097 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.276 1.276 14 C 0.366 3.634 15 C -0.158 4.158 16 C -0.070 4.070 17 C -0.183 4.183 18 C 0.110 3.890 19 N -0.488 5.488 20 H 0.056 0.944 21 H 0.086 0.914 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.263 0.737 26 H 0.136 0.864 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.330 -15.809 1.482 15.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.327 5.327 3 C 0.316 3.684 4 O -0.404 6.404 5 C -0.026 4.026 6 C -0.550 4.550 7 H 0.092 0.908 8 C -0.144 4.144 9 N -0.540 5.540 10 Si 0.731 3.269 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.201 1.201 14 C 0.141 3.859 15 C -0.180 4.180 16 C -0.097 4.097 17 C -0.203 4.203 18 C -0.049 4.049 19 N -0.199 5.199 20 H 0.075 0.925 21 H 0.105 0.895 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.154 0.846 27 H 0.153 0.847 28 H 0.152 0.848 29 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.101 -15.214 0.667 15.229 hybrid contribution 0.764 0.336 0.721 1.103 sum 0.663 -14.879 1.388 14.958 Atomic orbital electron populations 1.21754 0.78044 1.03439 1.01816 1.45814 1.07083 1.02988 1.76801 1.22315 0.88504 0.84806 0.72746 1.90558 1.15309 1.86768 1.47757 1.19270 0.96827 0.86922 0.99567 1.21128 0.94180 0.89576 1.50068 0.90781 1.24987 0.95393 0.98972 0.95085 1.69940 1.12804 1.20722 1.50500 0.86470 0.80883 0.80699 0.78892 1.20096 1.21303 1.20107 1.18329 0.92080 0.87465 0.88068 1.22177 0.99896 0.96629 0.99274 1.21483 0.95538 0.94161 0.98499 1.22101 1.02634 1.01909 0.93655 1.22565 0.93315 0.90529 0.98452 1.67388 1.13438 1.09013 1.30046 0.92509 0.89524 0.91967 0.93029 0.93020 0.92781 0.84643 0.84676 0.84789 0.82746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.41 10.19 59.84 0.61 2.02 15 2 N -0.59 -11.66 2.97 -122.77 -0.36 -12.02 15 3 C 0.52 12.73 7.62 -10.98 -0.08 12.65 15 4 O -0.53 -14.74 15.44 5.56 0.09 -14.65 15 5 C 0.01 0.34 4.13 -29.04 -0.12 0.22 15 6 C -0.51 -15.01 8.92 -34.44 -0.31 -15.32 15 7 H 0.07 2.28 6.75 -52.48 -0.35 1.92 15 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 9 N -0.90 -26.28 13.29 55.43 0.74 -25.54 15 10 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 15 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 12 H -0.29 -6.89 7.11 56.52 0.40 -6.48 15 13 H -0.28 -6.74 7.11 56.52 0.40 -6.33 15 14 C 0.37 6.75 5.44 -154.71 -0.84 5.91 15 15 C -0.16 -2.43 10.02 -39.24 -0.39 -2.82 15 16 C -0.07 -0.85 10.17 -39.32 -0.40 -1.25 15 17 C -0.18 -2.06 10.10 -39.42 -0.40 -2.46 15 18 C 0.11 1.48 11.18 -17.57 -0.20 1.29 15 19 N -0.49 -8.73 10.39 -12.37 -0.13 -8.86 15 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.09 1.37 6.48 -51.93 -0.34 1.03 15 22 H 0.06 0.83 8.05 -51.93 -0.42 0.42 15 23 H 0.05 1.34 7.25 -51.93 -0.38 0.96 15 24 H 0.05 1.32 8.14 -51.93 -0.42 0.90 15 25 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 26 H 0.14 1.95 8.06 -52.48 -0.42 1.53 15 27 H 0.14 1.17 8.06 -52.49 -0.42 0.75 15 28 H 0.13 1.02 8.06 -52.48 -0.42 0.60 15 29 H 0.16 1.57 8.06 -52.49 -0.42 1.15 15 LS Contribution 261.54 15.07 3.94 3.94 Total: -1.00 -34.64 261.54 -6.14 -40.78 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -3.16 Total: -2.68 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -2.23 Total: 1.76 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.24 Total: -46.42 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.09 Total: -14.65 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -34.64 -6.14 -40.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258699743.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.239 kcal (2) G-P(sol) polarization free energy of solvation -34.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds