Wall clock time and date at job start Mon Mar 30 2020 02:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 119.99606 * 2 1 4 4 C 1.34772 * 120.00484 * 180.02562 * 2 1 3 5 5 O 1.21519 * 119.99610 * 2.69937 * 4 2 1 6 6 C 1.48129 * 120.00363 * 182.70126 * 4 2 1 7 7 C 1.40151 * 120.83997 * 134.14395 * 6 4 2 8 8 C 1.38646 * 119.40272 * 180.02562 * 7 6 4 9 9 N 1.31386 * 121.15718 * 0.02730 * 8 7 6 10 10 C 1.33565 * 121.83422 * 359.67521 * 9 8 7 11 11 C 1.41380 * 119.77385 * 180.31280 * 10 9 8 12 12 H 1.07997 * 120.00461 * 180.26998 * 11 10 9 13 13 C 1.40069 * 119.99735 * 0.27411 * 11 10 9 14 14 N 1.30720 * 120.00170 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00112 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47167 * 59.99238 * 15 13 11 17 17 H 1.48493 * 109.47156 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46686 * 299.99683 * 15 13 11 19 19 C 1.39331 * 120.83938 * 314.17111 * 6 4 2 20 20 H 1.08999 * 109.46718 * 269.99206 * 1 2 3 21 21 H 1.08991 * 109.47493 * 29.99889 * 1 2 3 22 22 H 1.08997 * 109.46737 * 149.99770 * 1 2 3 23 23 H 1.09004 * 109.46990 * 175.05230 * 3 2 1 24 24 H 1.08996 * 109.47600 * 295.05002 * 3 2 1 25 25 H 1.08996 * 109.47068 * 55.05240 * 3 2 1 26 26 H 1.07999 * 120.29695 * 0.02562 * 7 6 4 27 27 H 1.07997 * 119.42142 * 179.97438 * 8 7 6 28 28 H 0.96993 * 120.00689 * 180.02562 * 14 13 11 29 29 H 1.07996 * 120.58838 * 359.95114 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1390 -1.1671 -0.0005 5 8 1.5324 -2.2189 -0.0506 6 6 3.6190 -1.1678 0.0599 7 6 4.3021 -2.0267 0.9317 8 6 5.6880 -2.0022 0.9643 9 7 6.3718 -1.1877 0.1928 10 6 5.7703 -0.3535 -0.6595 11 6 6.5492 0.4999 -1.4742 12 1 6.0666 1.1789 -2.1615 13 6 7.9469 0.4647 -1.3900 14 7 8.5311 -0.3569 -0.5578 15 14 8.9762 1.5917 -2.4670 16 1 8.6344 3.0064 -2.1717 17 1 10.4167 1.3625 -2.1887 18 1 8.6955 1.3026 -3.8962 19 6 4.3673 -0.3142 -0.7480 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3634 0.8899 -0.5138 22 1 -0.3633 -0.8900 -0.5139 23 1 3.2658 1.0716 0.0886 24 1 2.0023 1.8010 -0.9309 25 1 1.8693 1.8777 0.8423 26 1 3.7538 -2.7016 1.5722 27 1 6.2146 -2.6636 1.6362 28 1 9.4989 -0.3811 -0.4992 29 1 3.8787 0.3625 -1.4333 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259039188.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:26 Heat of formation + Delta-G solvation = 7.700230 kcal Electronic energy + Delta-G solvation = -14485.185171 eV Core-core repulsion = 11987.769875 eV Total energy + Delta-G solvation = -2497.415297 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.61117 -37.74192 -35.13953 -33.70743 -31.25104 -30.12000 -27.68287 -26.02409 -25.70818 -22.48876 -21.50816 -19.36641 -17.53396 -16.09011 -16.00551 -15.38929 -15.10924 -14.60403 -14.13639 -13.76372 -12.81965 -12.79608 -12.48332 -12.36430 -12.18410 -12.09020 -11.59644 -11.31577 -11.21457 -10.87633 -10.59770 -10.06134 -9.53812 -9.41735 -8.45312 -8.27180 -7.77041 -7.68960 -6.51506 -4.64958 2.25258 2.63616 3.03250 3.04634 3.09949 3.34571 3.60894 3.86649 4.64811 5.07608 5.49502 5.50518 5.55769 5.73160 5.82196 5.91364 5.95222 6.18375 6.37422 6.50451 6.66752 6.76330 6.97637 7.13097 7.28666 7.40370 7.74252 7.77330 8.09246 8.50726 8.62490 8.76183 9.96263 10.20131 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.040593 B = 0.008046 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.607100 B = 3478.998069 C = 4007.943142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.620 5.620 3 C 0.057 3.943 4 C 0.566 3.434 5 O -0.549 6.549 6 C -0.066 4.066 7 C -0.273 4.273 8 C 0.127 3.873 9 N -0.474 5.474 10 C 0.251 3.749 11 C -0.428 4.428 12 H 0.085 0.915 13 C 0.068 3.932 14 N -0.712 5.712 15 Si 0.909 3.091 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.264 1.264 19 C -0.248 4.248 20 H 0.050 0.950 21 H 0.065 0.935 22 H 0.074 0.926 23 H 0.112 0.888 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.101 0.899 27 H 0.126 0.874 28 H 0.275 0.725 29 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 4.854 0.374 7.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.354 5.354 3 C -0.085 4.085 4 C 0.357 3.643 5 O -0.427 6.427 6 C -0.075 4.075 7 C -0.297 4.297 8 C -0.039 4.039 9 N -0.187 5.187 10 C 0.127 3.873 11 C -0.459 4.459 12 H 0.103 0.897 13 C -0.158 4.158 14 N -0.333 5.333 15 Si 0.733 3.267 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.189 1.189 19 C -0.271 4.271 20 H 0.068 0.932 21 H 0.084 0.916 22 H 0.092 0.908 23 H 0.130 0.870 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.120 0.880 27 H 0.143 0.857 28 H 0.087 0.913 29 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.177 4.266 0.439 6.722 hybrid contribution -0.588 0.555 -0.473 0.937 sum -5.764 4.821 -0.034 7.515 Atomic orbital electron populations 1.21543 0.79976 1.02691 1.01358 1.47650 1.06495 1.06881 1.74370 1.22375 1.00915 0.84492 1.00760 1.18978 0.88232 0.82725 0.74409 1.90673 1.70370 1.31334 1.50334 1.19547 0.90245 0.98344 0.99333 1.21300 0.95636 1.05852 1.06873 1.22533 0.90037 0.95520 0.95781 1.68657 1.37431 1.06122 1.06450 1.18556 0.88033 0.90495 0.90245 1.19600 0.90916 1.17403 1.17954 0.89652 1.26081 0.98788 0.95553 0.95342 1.70095 1.10853 1.26552 1.25776 0.86355 0.78583 0.80881 0.80861 1.18837 1.20152 1.18868 1.21916 0.95503 1.04178 1.05550 0.93185 0.91603 0.90774 0.86957 0.92580 0.92817 0.88034 0.85663 0.91319 0.87266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 10.50 59.85 0.63 1.81 15 2 N -0.62 -10.69 3.27 -190.54 -0.62 -11.31 15 3 C 0.06 0.85 9.52 59.85 0.57 1.42 15 4 C 0.57 12.14 7.32 -12.20 -0.09 12.05 15 5 O -0.55 -13.07 16.58 5.35 0.09 -12.98 15 6 C -0.07 -1.51 5.15 -104.71 -0.54 -2.05 15 7 C -0.27 -6.33 9.83 -38.71 -0.38 -6.71 15 8 C 0.13 3.04 11.17 -17.59 -0.20 2.84 15 9 N -0.47 -12.66 7.84 -11.18 -0.09 -12.75 15 10 C 0.25 6.55 6.55 -85.02 -0.56 5.99 15 11 C -0.43 -10.81 9.14 -37.70 -0.34 -11.15 15 12 H 0.09 1.98 7.85 -52.49 -0.41 1.56 15 13 C 0.07 1.66 5.50 -17.34 -0.10 1.57 15 14 N -0.71 -18.25 11.46 55.55 0.64 -17.62 15 15 Si 0.91 17.71 29.56 -169.99 -5.02 12.68 15 16 H -0.26 -5.02 7.11 56.52 0.40 -4.62 15 17 H -0.28 -5.29 7.11 56.52 0.40 -4.89 15 18 H -0.26 -5.10 7.11 56.52 0.40 -4.70 15 19 C -0.25 -5.76 7.13 -38.27 -0.27 -6.03 15 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.07 0.69 8.07 -51.93 -0.42 0.27 15 22 H 0.07 1.08 7.38 -51.93 -0.38 0.70 15 23 H 0.11 1.97 4.13 -51.93 -0.21 1.75 15 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 15 26 H 0.10 2.22 8.06 -52.49 -0.42 1.79 15 27 H 0.13 2.63 8.06 -52.49 -0.42 2.21 15 28 H 0.28 6.41 8.29 -40.82 -0.34 6.07 15 29 H 0.11 2.30 6.70 -52.49 -0.35 1.94 15 LS Contribution 254.83 15.07 3.84 3.84 Total: -1.00 -30.09 254.83 -5.48 -35.57 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -3.03 Total: 2.84 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.28 Total: -0.27 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: -0.07 Total: -41.68 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.09 Total: -12.98 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.02 Total: 12.68 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.09 -5.48 -35.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259039188.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.266 kcal (2) G-P(sol) polarization free energy of solvation -30.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds