Wall clock time and date at job start Mon Mar 30 2020 02:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 119.99606 * 2 1 4 4 C 1.34772 * 120.00484 * 180.02562 * 2 1 3 5 5 O 1.21519 * 119.99610 * 2.69937 * 4 2 1 6 6 C 1.48129 * 120.00363 * 182.70126 * 4 2 1 7 7 C 1.40151 * 120.83997 * 134.14395 * 6 4 2 8 8 C 1.38646 * 119.40272 * 180.02562 * 7 6 4 9 9 N 1.31386 * 121.15718 * 0.02730 * 8 7 6 10 10 C 1.33565 * 121.83422 * 359.67521 * 9 8 7 11 11 C 1.41380 * 119.77385 * 180.31280 * 10 9 8 12 12 H 1.07997 * 120.00461 * 180.26998 * 11 10 9 13 13 C 1.40069 * 119.99735 * 0.27411 * 11 10 9 14 14 N 1.30720 * 120.00170 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00112 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47167 * 59.99238 * 15 13 11 17 17 H 1.48493 * 109.47156 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46686 * 299.99683 * 15 13 11 19 19 C 1.39331 * 120.83938 * 314.17111 * 6 4 2 20 20 H 1.08999 * 109.46718 * 269.99206 * 1 2 3 21 21 H 1.08991 * 109.47493 * 29.99889 * 1 2 3 22 22 H 1.08997 * 109.46737 * 149.99770 * 1 2 3 23 23 H 1.09004 * 109.46990 * 175.05230 * 3 2 1 24 24 H 1.08996 * 109.47600 * 295.05002 * 3 2 1 25 25 H 1.08996 * 109.47068 * 55.05240 * 3 2 1 26 26 H 1.07999 * 120.29695 * 0.02562 * 7 6 4 27 27 H 1.07997 * 119.42142 * 179.97438 * 8 7 6 28 28 H 0.96993 * 120.00689 * 180.02562 * 14 13 11 29 29 H 1.07996 * 120.58838 * 359.95114 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1390 -1.1671 -0.0005 5 8 1.5324 -2.2189 -0.0506 6 6 3.6190 -1.1678 0.0599 7 6 4.3021 -2.0267 0.9317 8 6 5.6880 -2.0022 0.9643 9 7 6.3718 -1.1877 0.1928 10 6 5.7703 -0.3535 -0.6595 11 6 6.5492 0.4999 -1.4742 12 1 6.0666 1.1789 -2.1615 13 6 7.9469 0.4647 -1.3900 14 7 8.5311 -0.3569 -0.5578 15 14 8.9762 1.5917 -2.4670 16 1 8.6344 3.0064 -2.1717 17 1 10.4167 1.3625 -2.1887 18 1 8.6955 1.3026 -3.8962 19 6 4.3673 -0.3142 -0.7480 20 1 -0.3633 -0.0001 1.0277 21 1 -0.3634 0.8899 -0.5138 22 1 -0.3633 -0.8900 -0.5139 23 1 3.2658 1.0716 0.0886 24 1 2.0023 1.8010 -0.9309 25 1 1.8693 1.8777 0.8423 26 1 3.7538 -2.7016 1.5722 27 1 6.2146 -2.6636 1.6362 28 1 9.4989 -0.3811 -0.4992 29 1 3.8787 0.3625 -1.4333 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259039188.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:26 Heat of formation + Delta-G solvation = -11.756909 kcal Electronic energy + Delta-G solvation = -14486.028896 eV Core-core repulsion = 11987.769875 eV Total energy + Delta-G solvation = -2498.259021 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.25101 -39.52801 -36.61991 -35.53151 -33.01026 -31.98396 -28.94269 -27.63820 -27.35028 -24.18110 -23.32859 -21.01852 -19.20830 -17.74747 -17.67589 -16.88116 -16.66784 -16.37247 -15.81610 -15.35273 -14.45232 -14.38723 -14.14775 -13.97628 -13.38555 -13.33915 -13.06760 -12.88892 -12.78394 -12.64225 -12.23249 -11.80052 -11.26346 -11.14719 -10.19320 -9.72274 -9.64408 -9.55627 -8.32442 -6.55164 0.47579 0.81364 1.45224 1.55301 1.57398 1.79209 2.09144 2.24439 2.82993 3.59690 3.83770 4.14440 4.29609 4.43120 4.49231 4.55744 4.70320 4.72607 4.84633 4.85899 4.99449 5.14387 5.30701 5.44542 5.50076 5.62268 5.93799 6.19979 6.25549 6.66326 6.86989 7.04364 8.09489 8.42466 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.040593 B = 0.008046 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.607100 B = 3478.998069 C = 4007.943142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.612 5.612 3 C 0.055 3.945 4 C 0.560 3.440 5 O -0.583 6.583 6 C -0.074 4.074 7 C -0.280 4.280 8 C 0.115 3.885 9 N -0.509 5.509 10 C 0.219 3.781 11 C -0.455 4.455 12 H 0.099 0.901 13 C 0.024 3.976 14 N -0.752 5.752 15 Si 0.989 3.011 16 H -0.254 1.254 17 H -0.272 1.272 18 H -0.259 1.259 19 C -0.239 4.239 20 H 0.064 0.936 21 H 0.104 0.896 22 H 0.060 0.940 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.111 0.889 27 H 0.146 0.854 28 H 0.281 0.719 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.761 6.703 -0.325 9.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.343 5.343 3 C -0.087 4.087 4 C 0.350 3.650 5 O -0.464 6.464 6 C -0.083 4.083 7 C -0.303 4.303 8 C -0.049 4.049 9 N -0.222 5.222 10 C 0.095 3.905 11 C -0.486 4.486 12 H 0.117 0.883 13 C -0.199 4.199 14 N -0.374 5.374 15 Si 0.809 3.191 16 H -0.178 1.178 17 H -0.197 1.197 18 H -0.184 1.184 19 C -0.262 4.262 20 H 0.083 0.917 21 H 0.123 0.877 22 H 0.079 0.921 23 H 0.102 0.898 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.129 0.871 27 H 0.163 0.837 28 H 0.092 0.908 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.007 6.146 -0.244 8.598 hybrid contribution -0.443 -0.004 -0.205 0.488 sum -6.450 6.143 -0.449 8.919 Atomic orbital electron populations 1.21821 0.77380 1.03987 1.02757 1.47762 1.08171 1.06269 1.72136 1.22479 0.98995 0.83740 1.03499 1.18767 0.87553 0.83674 0.75000 1.90650 1.70596 1.32709 1.52450 1.19831 0.91740 0.97910 0.98868 1.21488 0.95580 1.06107 1.07155 1.22888 0.90646 0.95543 0.95861 1.68629 1.38625 1.07332 1.07654 1.19036 0.89505 0.91122 0.90855 1.20038 0.92011 1.17973 1.18539 0.88255 1.27033 0.99626 0.96805 0.96399 1.70199 1.11486 1.28239 1.27444 0.85157 0.76585 0.78773 0.78619 1.17765 1.19690 1.18373 1.22029 0.94591 1.04156 1.05431 0.91718 0.87717 0.92071 0.89839 0.89846 0.89942 0.87077 0.83662 0.90811 0.85332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.97 10.50 127.77 1.34 3.31 15 2 N -0.61 -19.63 3.27 -875.05 -2.86 -22.50 15 3 C 0.05 1.46 9.52 127.77 1.22 2.67 15 4 C 0.56 23.58 7.32 86.87 0.64 24.21 15 5 O -0.58 -27.61 16.58 -3.78 -0.06 -27.67 15 6 C -0.07 -3.41 5.15 -19.92 -0.10 -3.52 15 7 C -0.28 -13.12 9.83 22.83 0.22 -12.89 15 8 C 0.12 5.61 11.17 84.86 0.95 6.56 15 9 N -0.51 -27.82 7.84 -189.28 -1.48 -29.30 15 10 C 0.22 11.60 6.55 40.24 0.26 11.86 15 11 C -0.45 -23.03 9.14 23.49 0.21 -22.82 15 12 H 0.10 4.53 7.85 -2.91 -0.02 4.51 15 13 C 0.02 1.15 5.50 85.30 0.47 1.62 15 14 N -0.75 -39.11 11.46 21.84 0.25 -38.86 15 15 Si 0.99 35.73 29.56 68.60 2.03 37.75 15 16 H -0.25 -8.68 7.11 99.48 0.71 -7.97 15 17 H -0.27 -9.53 7.11 99.48 0.71 -8.82 15 18 H -0.26 -9.10 7.11 99.48 0.71 -8.40 15 19 C -0.24 -11.08 7.13 23.12 0.16 -10.92 15 20 H 0.06 1.40 8.14 -2.39 -0.02 1.38 15 21 H 0.10 1.72 8.07 -2.39 -0.02 1.70 15 22 H 0.06 1.66 7.38 -2.39 -0.02 1.64 15 23 H 0.08 2.79 4.13 -2.38 -0.01 2.78 15 24 H 0.08 1.81 8.14 -2.39 -0.02 1.79 15 25 H 0.08 1.76 8.14 -2.39 -0.02 1.74 15 26 H 0.11 4.89 8.06 -2.91 -0.02 4.86 15 27 H 0.15 6.21 8.06 -2.91 -0.02 6.19 15 28 H 0.28 13.23 8.29 -92.71 -0.77 12.46 15 29 H 0.13 5.28 6.70 -2.91 -0.02 5.26 15 Total: -1.00 -65.74 254.83 4.40 -61.34 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 1.16 Total: 19.13 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.38 Total: 0.10 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -4.10 Total: -90.65 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.06 Total: -27.67 kcal Atomic # 14 Polarization: 35.73 SS G_CDS: 2.03 Total: 37.75 kcal Total: -65.74 4.40 -61.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259039188.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.581 kcal (2) G-P(sol) polarization free energy of solvation -65.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds