Wall clock time and date at job start Mon Mar 30 2020 02:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99905 * 2 1 4 4 C 1.50700 * 109.46934 * 269.99954 * 3 2 1 5 5 O 1.21430 * 120.00439 * 0.02562 * 4 3 2 6 6 C 1.41029 * 119.99736 * 180.02562 * 4 3 2 7 7 H 1.07999 * 120.00073 * 359.97438 * 6 4 3 8 8 C 1.40465 * 119.99767 * 180.02562 * 6 4 3 9 9 N 1.30517 * 120.00144 * 0.02562 * 8 6 4 10 10 Si 1.86803 * 119.99981 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.46978 * 89.99856 * 10 8 6 12 12 H 1.48499 * 109.47161 * 210.00201 * 10 8 6 13 13 H 1.48505 * 109.46909 * 330.00399 * 10 8 6 14 14 C 1.39001 * 120.00337 * 180.02562 * 2 1 3 15 15 C 1.39146 * 119.70404 * 4.99589 * 14 2 1 16 16 C 1.38295 * 119.09401 * 179.97438 * 15 14 2 17 17 C 1.38884 * 118.51011 * 0.02562 * 16 15 14 18 18 C 1.38022 * 119.32992 * 0.27628 * 17 16 15 19 19 N 1.31980 * 120.85123 * 359.44533 * 18 17 16 20 20 H 1.08999 * 109.47074 * 269.99803 * 1 2 3 21 21 H 1.09004 * 109.46791 * 30.00125 * 1 2 3 22 22 H 1.09002 * 109.46677 * 149.99766 * 1 2 3 23 23 H 1.08998 * 109.47186 * 29.99840 * 3 2 1 24 24 H 1.09005 * 109.47025 * 150.00364 * 3 2 1 25 25 H 0.96999 * 120.00392 * 180.02562 * 9 8 6 26 26 H 1.08000 * 120.44862 * 359.97438 * 15 14 2 27 27 H 1.08000 * 120.74269 * 180.02562 * 16 15 14 28 28 H 1.08002 * 120.33299 * 179.97438 * 17 16 15 29 29 H 1.07989 * 119.57332 * 179.70393 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 8 2.0537 1.0206 -2.3438 6 6 3.1424 2.9043 -1.6785 7 1 3.4933 3.5121 -0.8576 8 6 3.3760 3.3100 -3.0028 9 7 2.9506 2.5762 -3.9949 10 14 4.2943 4.9005 -3.3442 11 1 5.7500 4.6219 -3.4353 12 1 3.8201 5.4805 -4.6264 13 1 4.0426 5.8637 -2.2422 14 6 2.1601 -1.2037 -0.0005 15 6 1.4622 -2.4029 -0.1063 16 6 2.1664 -3.5931 -0.1061 17 6 3.5503 -3.5445 0.0008 18 6 4.1775 -2.3197 0.1088 19 7 3.4802 -1.1992 0.1005 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3633 -0.8900 -0.5139 23 1 1.6084 2.0284 0.5138 24 1 3.1500 1.1384 0.5138 25 1 3.1123 2.8562 -4.9094 26 1 0.3852 -2.4040 -0.1875 27 1 1.6518 -4.5391 -0.1873 28 1 4.1294 -4.4561 0.0044 29 1 5.2529 -2.2776 0.1970 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259145408.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:30 Heat of formation + Delta-G solvation = -11.717339 kcal Electronic energy + Delta-G solvation = -14517.075468 eV Core-core repulsion = 12018.818162 eV Total energy + Delta-G solvation = -2498.257306 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.04428 -39.00621 -36.77640 -34.67542 -33.25413 -31.36452 -30.14100 -28.29700 -26.19475 -24.06213 -22.80890 -21.18080 -18.44245 -18.41410 -17.38013 -17.13423 -16.49877 -15.90343 -15.60644 -15.21258 -14.92084 -14.42605 -14.28071 -13.91288 -13.73636 -13.29764 -12.93999 -12.89466 -12.49657 -12.39261 -12.14897 -12.05338 -11.02581 -10.96385 -10.59303 -10.15758 -9.56959 -8.53911 -8.02536 -7.07371 0.50054 0.69522 1.34563 1.36229 1.52947 2.16576 2.22087 2.25856 3.14613 3.39582 3.71257 4.10373 4.23460 4.36347 4.43851 4.49770 4.55921 4.62883 4.73939 4.85852 4.91431 5.00099 5.19780 5.20651 5.47985 5.85402 5.97368 6.11288 6.53447 6.73951 6.86722 7.42976 8.31483 8.54428 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.040789 B = 0.007754 C = 0.007209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.297939 B = 3610.388870 C = 3882.958417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.603 5.603 3 C 0.096 3.904 4 C 0.332 3.668 5 O -0.583 6.583 6 C -0.568 4.568 7 H 0.085 0.915 8 C 0.028 3.972 9 N -0.794 5.794 10 Si 0.993 3.007 11 H -0.262 1.262 12 H -0.268 1.268 13 H -0.246 1.246 14 C 0.387 3.613 15 C -0.261 4.261 16 C -0.034 4.034 17 C -0.245 4.245 18 C 0.125 3.875 19 N -0.583 5.583 20 H 0.076 0.924 21 H 0.055 0.945 22 H 0.074 0.926 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.279 0.721 26 H 0.144 0.856 27 H 0.166 0.834 28 H 0.161 0.839 29 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.273 -6.846 8.075 10.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.314 5.314 3 C -0.028 4.028 4 C 0.228 3.772 5 O -0.475 6.475 6 C -0.600 4.600 7 H 0.103 0.897 8 C -0.190 4.190 9 N -0.423 5.423 10 Si 0.812 3.188 11 H -0.186 1.186 12 H -0.193 1.193 13 H -0.169 1.169 14 C 0.153 3.847 15 C -0.286 4.286 16 C -0.060 4.060 17 C -0.268 4.268 18 C -0.032 4.032 19 N -0.302 5.302 20 H 0.094 0.906 21 H 0.074 0.926 22 H 0.092 0.908 23 H 0.111 0.889 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.162 0.838 27 H 0.184 0.816 28 H 0.179 0.821 29 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.231 -6.255 7.574 9.900 hybrid contribution 0.010 0.104 -0.466 0.477 sum -1.221 -6.151 7.108 9.479 Atomic orbital electron populations 1.21714 0.77618 1.02825 1.01847 1.46245 1.05816 1.02547 1.76751 1.21708 0.97360 0.84797 0.98953 1.20670 0.80558 0.86661 0.89318 1.90343 1.52591 1.56886 1.47639 1.21316 1.36029 1.08684 0.93976 0.89694 1.27218 0.94584 1.01843 0.95387 1.70106 1.34387 1.37343 1.00513 0.85098 0.78408 0.76398 0.78941 1.18642 1.19304 1.16891 1.18753 0.88701 0.86923 0.90324 1.21665 1.01899 0.91890 1.13123 1.21698 0.94311 0.98104 0.91866 1.22080 0.95722 0.99382 1.09588 1.22877 1.00439 0.87402 0.92498 1.67122 1.07396 1.33731 1.21921 0.90569 0.92638 0.90764 0.88932 0.89915 0.91121 0.83800 0.81614 0.82107 0.81520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.49 10.28 127.77 1.31 4.80 15 2 N -0.60 -26.13 2.48 -733.19 -1.82 -27.95 15 3 C 0.10 4.57 5.82 85.63 0.50 5.07 15 4 C 0.33 19.63 6.97 26.37 0.18 19.82 15 5 O -0.58 -39.26 14.95 -3.50 -0.05 -39.32 15 6 C -0.57 -32.81 9.22 23.50 0.22 -32.60 15 7 H 0.08 4.44 7.85 -2.91 -0.02 4.41 15 8 C 0.03 1.57 5.50 85.43 0.47 2.04 15 9 N -0.79 -48.56 11.72 21.91 0.26 -48.30 15 10 Si 0.99 40.81 29.56 68.60 2.03 42.84 15 11 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15 12 H -0.27 -10.51 7.11 99.48 0.71 -9.80 15 13 H -0.25 -9.37 7.11 99.48 0.71 -8.67 15 14 C 0.39 16.54 7.37 133.07 0.98 17.52 15 15 C -0.26 -8.93 9.27 22.50 0.21 -8.72 15 16 C -0.03 -0.95 10.17 22.44 0.23 -0.72 15 17 C -0.24 -6.82 10.10 22.37 0.23 -6.59 15 18 C 0.13 4.34 11.17 84.62 0.95 5.28 15 19 N -0.58 -25.64 9.08 -193.26 -1.75 -27.40 15 20 H 0.08 2.03 8.14 -2.39 -0.02 2.01 15 21 H 0.05 2.01 8.07 -2.38 -0.02 1.99 15 22 H 0.07 2.31 5.98 -2.39 -0.01 2.29 15 23 H 0.09 3.84 8.07 -2.39 -0.02 3.82 15 24 H 0.08 3.96 7.30 -2.38 -0.02 3.94 15 25 H 0.28 15.30 8.29 -92.71 -0.77 14.53 15 26 H 0.14 4.22 6.03 -2.91 -0.02 4.20 15 27 H 0.17 3.11 8.06 -2.91 -0.02 3.09 15 28 H 0.16 3.15 8.06 -2.91 -0.02 3.12 15 29 H 0.17 4.72 8.06 -2.92 -0.02 4.70 15 Total: -1.00 -79.33 258.91 5.09 -74.24 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 1.15 Total: 19.99 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 5.27 Total: 5.89 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -3.31 Total: -103.65 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.05 Total: -39.32 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -79.33 5.09 -74.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259145408.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.525 kcal (2) G-P(sol) polarization free energy of solvation -79.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds