Wall clock time and date at job start Mon Mar 30 2020 02:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36936 * 120.00199 * 2 1 4 4 H 1.08002 * 119.99955 * 203.04384 * 3 2 1 5 5 C 1.38811 * 120.00140 * 23.04004 * 3 2 1 6 6 N 1.31619 * 119.99524 * 12.96778 * 5 3 2 7 7 Si 1.86799 * 120.00123 * 192.96591 * 5 3 2 8 8 H 1.48499 * 109.47230 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46796 * 119.99928 * 7 5 3 10 10 H 1.48498 * 109.47164 * 240.00012 * 7 5 3 11 11 C 1.46500 * 119.99979 * 179.97438 * 2 1 3 12 12 C 1.50702 * 109.47455 * 89.99898 * 11 2 1 13 13 O 1.21253 * 119.99425 * 0.02562 * 12 11 2 14 14 C 1.47161 * 120.00340 * 180.02562 * 12 11 2 15 15 C 1.40298 * 120.58307 * 180.02562 * 14 12 11 16 16 C 1.38291 * 118.26002 * 179.97438 * 15 14 12 17 17 C 1.38393 * 119.33373 * 0.27718 * 16 15 14 18 18 N 1.31961 * 121.13853 * 359.44293 * 17 16 15 19 19 C 1.31641 * 121.90620 * 0.54572 * 18 17 16 20 20 H 1.09001 * 109.47440 * 275.12486 * 1 2 3 21 21 H 1.08999 * 109.47320 * 35.11962 * 1 2 3 22 22 H 1.08996 * 109.47322 * 155.12269 * 1 2 3 23 23 H 0.97005 * 119.99612 * 179.97438 * 6 5 3 24 24 H 1.09002 * 109.47415 * 330.00195 * 11 2 1 25 25 H 1.09003 * 109.47138 * 209.99899 * 11 2 1 26 26 H 1.07993 * 120.87503 * 359.95267 * 15 14 12 27 27 H 1.08001 * 120.33422 * 180.02562 * 16 15 14 28 28 H 1.07996 * 119.43601 * 179.70605 * 17 16 15 29 29 H 1.08010 * 119.73471 * 179.72289 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2232 -0.3661 5 6 1.5387 2.3401 0.4705 6 7 0.4121 2.2597 1.1463 7 14 2.3154 4.0074 0.1445 8 1 3.5686 3.8265 -0.6314 9 1 1.3707 4.8503 -0.6315 10 1 2.6241 4.6708 1.4367 11 6 2.1974 -1.2687 0.0006 12 6 2.4486 -1.7045 -1.4200 13 8 2.0550 -1.0223 -2.3419 14 6 3.1715 -2.9579 -1.6884 15 6 3.4125 -3.3749 -3.0061 16 6 4.0968 -4.5604 -3.2030 17 6 4.5129 -5.2933 -2.1053 18 7 4.2773 -4.8748 -0.8762 19 6 3.6308 -3.7538 -0.6348 20 1 -0.3634 0.0918 1.0235 21 1 -0.3634 0.8406 -0.5912 22 1 -0.3634 -0.9323 -0.4323 23 1 -0.0147 3.0662 1.4754 24 1 1.6083 -2.0282 0.5147 25 1 3.1498 -1.1382 0.5143 26 1 3.0722 -2.7857 -3.8448 27 1 4.3009 -4.9127 -4.2033 28 1 5.0433 -6.2217 -2.2571 29 1 3.4533 -3.4467 0.3854 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259393677.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:24 Heat of formation + Delta-G solvation = 29.136736 kcal Electronic energy + Delta-G solvation = -14278.281731 eV Core-core repulsion = 11781.795991 eV Total energy + Delta-G solvation = -2496.485740 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.24266 -38.27919 -35.11263 -32.43548 -31.91469 -31.03566 -27.51498 -25.82351 -24.24933 -23.38969 -21.49840 -19.44420 -17.31515 -16.80213 -16.17455 -15.91000 -14.83874 -14.54039 -14.28107 -13.90258 -13.61540 -13.16787 -13.03764 -12.69811 -12.19246 -11.82546 -11.23208 -10.85163 -10.70720 -10.42237 -9.98043 -9.91048 -9.89226 -9.72745 -9.17001 -9.13699 -8.50976 -6.77362 -5.73059 -3.20200 0.66636 1.21184 2.87139 3.39442 3.46699 3.49681 3.91213 4.26350 4.44308 4.61307 4.76641 4.94119 4.97222 5.38328 5.43484 5.54741 5.59191 5.86882 6.03047 6.10581 6.25828 6.39879 6.57972 6.74462 7.39811 7.70653 7.81270 7.84497 8.15904 8.39899 9.20986 9.82269 10.30050 11.31955 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.050451 B = 0.006579 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.865591 B = 4254.899772 C = 4372.490143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.584 5.584 3 C -0.253 4.253 4 H 0.066 0.934 5 C 0.004 3.996 6 N -0.906 5.906 7 Si 0.906 3.094 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.110 3.890 12 C 0.357 3.643 13 O -0.431 6.431 14 C -0.206 4.206 15 C -0.030 4.030 16 C -0.187 4.187 17 C 0.111 3.889 18 N -0.494 5.494 19 C 0.142 3.858 20 H 0.035 0.965 21 H 0.043 0.957 22 H -0.004 1.004 23 H 0.253 0.747 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.141 0.859 27 H 0.136 0.864 28 H 0.156 0.844 29 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.768 -13.143 -5.159 15.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.304 5.304 3 C -0.383 4.383 4 H 0.084 0.916 5 C -0.194 4.194 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.216 1.216 11 C -0.020 4.020 12 C 0.228 3.772 13 O -0.303 6.303 14 C -0.210 4.210 15 C -0.056 4.056 16 C -0.206 4.206 17 C -0.045 4.045 18 N -0.203 5.203 19 C -0.016 4.016 20 H 0.054 0.946 21 H 0.062 0.938 22 H 0.015 0.985 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.159 0.841 27 H 0.154 0.846 28 H 0.173 0.827 29 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.706 -13.093 -4.860 15.087 hybrid contribution 0.128 1.336 -1.032 1.693 sum 5.834 -11.757 -5.893 14.387 Atomic orbital electron populations 1.20829 0.82063 0.95719 0.99456 1.43639 1.02025 0.99902 1.84877 1.19167 0.98221 0.85547 1.35321 0.91577 1.24992 0.97802 0.98553 0.98058 1.70081 1.19406 1.27194 1.38394 0.86155 0.78629 0.84113 0.77462 1.20298 1.21542 1.21650 1.21090 0.98673 0.90701 0.91527 1.24670 0.75266 0.82046 0.95229 1.90461 1.40279 1.51867 1.47717 1.22242 1.03684 1.00252 0.94806 1.21946 0.92091 0.94398 0.97201 1.22114 1.01256 0.96462 1.00807 1.22936 0.95084 0.98699 0.87815 1.67715 1.13632 1.15129 1.23789 1.23251 0.90214 0.88549 0.99594 0.94641 0.93818 0.98538 0.93730 0.90766 0.89674 0.84133 0.84603 0.82701 0.81532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.16 8.98 59.84 0.54 4.70 15 2 N -0.58 -15.00 2.41 -182.51 -0.44 -15.44 15 3 C -0.25 -7.13 9.65 -15.06 -0.15 -7.28 15 4 H 0.07 1.85 7.86 -52.49 -0.41 1.43 15 5 C 0.00 0.12 5.10 -17.43 -0.09 0.03 15 6 N -0.91 -26.66 10.71 55.49 0.59 -26.07 15 7 Si 0.91 22.36 29.57 -169.99 -5.03 17.33 15 8 H -0.28 -6.74 7.11 56.52 0.40 -6.33 15 9 H -0.29 -7.18 7.11 56.52 0.40 -6.77 15 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 11 C 0.11 2.17 4.76 -5.19 -0.02 2.15 15 12 C 0.36 6.81 7.19 -30.69 -0.22 6.59 15 13 O -0.43 -9.89 16.50 5.58 0.09 -9.80 15 14 C -0.21 -3.14 5.89 -104.92 -0.62 -3.75 15 15 C -0.03 -0.41 9.72 -38.79 -0.38 -0.79 15 16 C -0.19 -1.99 10.09 -39.50 -0.40 -2.39 15 17 C 0.11 1.20 11.17 -17.44 -0.19 1.01 15 18 N -0.49 -6.52 10.34 -12.83 -0.13 -6.65 15 19 C 0.14 1.92 10.65 -17.05 -0.18 1.73 15 20 H 0.04 0.94 7.34 -51.93 -0.38 0.56 15 21 H 0.04 1.21 7.34 -51.93 -0.38 0.83 15 22 H 0.00 -0.09 8.03 -51.93 -0.42 -0.51 15 23 H 0.25 7.16 8.31 -40.82 -0.34 6.82 15 24 H 0.07 1.26 8.03 -51.93 -0.42 0.85 15 25 H 0.09 1.56 8.00 -51.93 -0.42 1.15 15 26 H 0.14 1.88 7.73 -52.49 -0.41 1.47 15 27 H 0.14 1.02 8.06 -52.49 -0.42 0.60 15 28 H 0.16 1.15 8.06 -52.49 -0.42 0.73 15 29 H 0.17 1.93 7.08 -52.48 -0.37 1.56 15 LS Contribution 259.90 15.07 3.92 3.92 Total: -1.00 -33.11 259.90 -5.89 -39.00 By element: Atomic # 1 Polarization: -1.11 SS G_CDS: -3.18 Total: -4.29 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -1.71 Total: 2.00 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.02 Total: -48.15 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.11 -5.89 -39.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259393677.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.136 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds