Wall clock time and date at job start Mon Mar 30 2020 02:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36936 * 120.00199 * 2 1 4 4 H 1.08002 * 119.99955 * 203.04384 * 3 2 1 5 5 C 1.38811 * 120.00140 * 23.04004 * 3 2 1 6 6 N 1.31619 * 119.99524 * 12.96778 * 5 3 2 7 7 Si 1.86799 * 120.00123 * 192.96591 * 5 3 2 8 8 H 1.48499 * 109.47230 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46796 * 119.99928 * 7 5 3 10 10 H 1.48498 * 109.47164 * 240.00012 * 7 5 3 11 11 C 1.46500 * 119.99979 * 179.97438 * 2 1 3 12 12 C 1.50702 * 109.47455 * 89.99898 * 11 2 1 13 13 O 1.21253 * 119.99425 * 0.02562 * 12 11 2 14 14 C 1.47161 * 120.00340 * 180.02562 * 12 11 2 15 15 C 1.40298 * 120.58307 * 180.02562 * 14 12 11 16 16 C 1.38291 * 118.26002 * 179.97438 * 15 14 12 17 17 C 1.38393 * 119.33373 * 0.27718 * 16 15 14 18 18 N 1.31961 * 121.13853 * 359.44293 * 17 16 15 19 19 C 1.31641 * 121.90620 * 0.54572 * 18 17 16 20 20 H 1.09001 * 109.47440 * 275.12486 * 1 2 3 21 21 H 1.08999 * 109.47320 * 35.11962 * 1 2 3 22 22 H 1.08996 * 109.47322 * 155.12269 * 1 2 3 23 23 H 0.97005 * 119.99612 * 179.97438 * 6 5 3 24 24 H 1.09002 * 109.47415 * 330.00195 * 11 2 1 25 25 H 1.09003 * 109.47138 * 209.99899 * 11 2 1 26 26 H 1.07993 * 120.87503 * 359.95267 * 15 14 12 27 27 H 1.08001 * 120.33422 * 180.02562 * 16 15 14 28 28 H 1.07996 * 119.43601 * 179.70605 * 17 16 15 29 29 H 1.08010 * 119.73471 * 179.72289 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1650 1.2232 -0.3661 5 6 1.5387 2.3401 0.4705 6 7 0.4121 2.2597 1.1463 7 14 2.3154 4.0074 0.1445 8 1 3.5686 3.8265 -0.6314 9 1 1.3707 4.8503 -0.6315 10 1 2.6241 4.6708 1.4367 11 6 2.1974 -1.2687 0.0006 12 6 2.4486 -1.7045 -1.4200 13 8 2.0550 -1.0223 -2.3419 14 6 3.1715 -2.9579 -1.6884 15 6 3.4125 -3.3749 -3.0061 16 6 4.0968 -4.5604 -3.2030 17 6 4.5129 -5.2933 -2.1053 18 7 4.2773 -4.8748 -0.8762 19 6 3.6308 -3.7538 -0.6348 20 1 -0.3634 0.0918 1.0235 21 1 -0.3634 0.8406 -0.5912 22 1 -0.3634 -0.9323 -0.4323 23 1 -0.0147 3.0662 1.4754 24 1 1.6083 -2.0282 0.5147 25 1 3.1498 -1.1382 0.5143 26 1 3.0722 -2.7857 -3.8448 27 1 4.3009 -4.9127 -4.2033 28 1 5.0433 -6.2217 -2.2571 29 1 3.4533 -3.4467 0.3854 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259393677.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:24 Heat of formation + Delta-G solvation = 7.398284 kcal Electronic energy + Delta-G solvation = -14279.224381 eV Core-core repulsion = 11781.795991 eV Total energy + Delta-G solvation = -2497.428390 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.35611 -39.72655 -37.05399 -33.54047 -33.44085 -32.57618 -29.15459 -27.91882 -25.53882 -24.45508 -23.23847 -20.88553 -18.81810 -18.36684 -17.38727 -17.18700 -16.69280 -16.07201 -15.66635 -15.40195 -15.06337 -14.61906 -14.37999 -14.10213 -13.82406 -13.16515 -13.09533 -12.81839 -12.61041 -12.33337 -12.04926 -11.90426 -11.08721 -10.91684 -10.65012 -10.36778 -10.13611 -8.81068 -7.86484 -5.35866 -0.42231 0.24683 1.43046 1.45430 1.54030 1.55666 2.46812 2.87645 3.02419 3.32683 3.52194 3.71433 3.89206 3.92405 4.03384 4.42809 4.56978 4.57993 4.67274 4.78174 4.82181 5.05497 5.21687 5.31439 5.57500 5.64607 5.65607 6.26314 6.70740 6.90901 7.10050 7.79093 8.22118 9.16895 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.050451 B = 0.006579 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.865591 B = 4254.899772 C = 4372.490143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.606 5.606 3 C -0.261 4.261 4 H 0.063 0.937 5 C -0.050 4.050 6 N -0.934 5.934 7 Si 0.968 3.032 8 H -0.271 1.271 9 H -0.292 1.292 10 H -0.284 1.284 11 C 0.102 3.898 12 C 0.368 3.632 13 O -0.483 6.483 14 C -0.229 4.229 15 C -0.041 4.041 16 C -0.174 4.174 17 C 0.121 3.879 18 N -0.511 5.511 19 C 0.146 3.854 20 H 0.019 0.981 21 H 0.009 0.991 22 H 0.023 0.977 23 H 0.250 0.750 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.135 0.865 27 H 0.174 0.826 28 H 0.196 0.804 29 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.443 -15.184 -5.755 17.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.327 5.327 3 C -0.391 4.391 4 H 0.080 0.920 5 C -0.245 4.245 6 N -0.581 5.581 7 Si 0.796 3.204 8 H -0.196 1.196 9 H -0.219 1.219 10 H -0.210 1.210 11 C -0.026 4.026 12 C 0.244 3.756 13 O -0.359 6.359 14 C -0.233 4.233 15 C -0.067 4.067 16 C -0.194 4.194 17 C -0.035 4.035 18 N -0.220 5.220 19 C -0.012 4.012 20 H 0.037 0.963 21 H 0.028 0.972 22 H 0.041 0.959 23 H 0.059 0.941 24 H 0.123 0.877 25 H 0.118 0.882 26 H 0.153 0.847 27 H 0.191 0.809 28 H 0.213 0.787 29 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.414 -15.184 -5.452 17.756 hybrid contribution -0.313 1.770 -0.896 2.009 sum 7.101 -13.414 -6.349 16.452 Atomic orbital electron populations 1.20544 0.82587 0.95546 0.97911 1.43831 1.02178 1.01292 1.85404 1.19408 0.98210 0.87021 1.34495 0.91966 1.25746 0.98599 1.01765 0.98423 1.70214 1.20649 1.27677 1.39543 0.85198 0.77833 0.80022 0.77335 1.19574 1.21940 1.21021 1.21423 0.99283 0.89105 0.92762 1.24483 0.74320 0.82906 0.93931 1.90450 1.42936 1.53863 1.48635 1.21800 1.05812 0.99286 0.96413 1.22084 0.92623 0.95644 0.96308 1.22473 0.99376 0.94750 1.02759 1.23677 0.93402 0.99491 0.86930 1.67820 1.14054 1.14867 1.25212 1.23412 0.89621 0.88400 0.99734 0.96313 0.97244 0.95864 0.94082 0.87711 0.88224 0.84743 0.80874 0.78715 0.80253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.29 8.98 127.77 1.15 10.43 15 2 N -0.61 -31.41 2.41 -731.33 -1.76 -33.18 15 3 C -0.26 -14.92 9.65 84.03 0.81 -14.11 15 4 H 0.06 3.52 7.86 -2.91 -0.02 3.49 15 5 C -0.05 -2.90 5.10 84.86 0.43 -2.46 15 6 N -0.93 -56.24 10.71 21.65 0.23 -56.01 15 7 Si 0.97 46.62 29.57 68.60 2.03 48.65 15 8 H -0.27 -12.59 7.11 99.48 0.71 -11.89 15 9 H -0.29 -14.15 7.11 99.48 0.71 -13.44 15 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 15 11 C 0.10 3.96 4.76 85.63 0.41 4.36 15 12 C 0.37 13.98 7.19 28.03 0.20 14.18 15 13 O -0.48 -22.60 16.50 -2.94 -0.05 -22.64 15 14 C -0.23 -6.68 5.89 -20.06 -0.12 -6.80 15 15 C -0.04 -1.03 9.72 22.78 0.22 -0.81 15 16 C -0.17 -3.03 10.09 22.32 0.23 -2.81 15 17 C 0.12 2.09 11.17 84.71 0.95 3.04 15 18 N -0.51 -11.80 10.34 -194.51 -2.01 -13.81 15 19 C 0.15 3.62 10.65 85.10 0.91 4.52 15 20 H 0.02 1.02 7.34 -2.39 -0.02 1.00 15 21 H 0.01 0.51 7.34 -2.39 -0.02 0.49 15 22 H 0.02 1.04 8.03 -2.39 -0.02 1.02 15 23 H 0.25 14.51 8.31 -92.70 -0.77 13.73 15 24 H 0.11 3.41 8.03 -2.39 -0.02 3.39 15 25 H 0.10 3.57 8.00 -2.39 -0.02 3.55 15 26 H 0.13 3.51 7.73 -2.91 -0.02 3.49 15 27 H 0.17 1.71 8.06 -2.91 -0.02 1.69 15 28 H 0.20 1.77 8.06 -2.91 -0.02 1.74 15 29 H 0.18 3.77 7.08 -2.91 -0.02 3.75 15 Total: -1.00 -72.77 259.90 4.76 -68.01 By element: Atomic # 1 Polarization: -1.71 SS G_CDS: 1.14 Total: -0.56 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 5.18 Total: 9.55 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -3.54 Total: -103.00 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -72.77 4.76 -68.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259393677.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.405 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds