Wall clock time and date at job start Mon Mar 30 2020 02:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35457 * 116.99950 * 2 1 4 4 N 1.31932 * 119.04826 * 359.97438 * 3 2 1 5 5 C 1.34012 * 120.51991 * 180.02562 * 4 3 2 6 6 C 1.41542 * 120.62549 * 179.97438 * 5 4 3 7 7 H 1.08003 * 120.00253 * 191.14154 * 6 5 4 8 8 C 1.40108 * 120.00102 * 11.14244 * 6 5 4 9 9 N 1.30676 * 120.00166 * 173.94407 * 8 6 5 10 10 Si 1.86802 * 120.00083 * 354.22233 * 8 6 5 11 11 H 1.48494 * 109.47481 * 179.72512 * 10 8 6 12 12 H 1.48508 * 109.46845 * 299.72594 * 10 8 6 13 13 H 1.48496 * 109.46984 * 59.72201 * 10 8 6 14 14 C 1.40928 * 118.74619 * 0.25325 * 5 4 3 15 15 C 1.38302 * 118.27158 * 359.50280 * 14 5 4 16 16 C 1.50701 * 120.33642 * 180.23759 * 15 14 5 17 17 C 1.52996 * 117.49962 * 343.88923 * 16 15 14 18 18 C 1.52996 * 117.50165 * 275.26085 * 16 15 14 19 19 N 1.32400 * 119.32755 * 0.50197 * 15 14 5 20 20 H 1.08999 * 109.47386 * 60.00394 * 1 2 3 21 21 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47783 * 300.00090 * 1 2 3 23 23 H 0.97006 * 119.99806 * 355.10592 * 9 8 6 24 24 H 1.08006 * 120.86077 * 179.72833 * 14 5 4 25 25 H 1.09004 * 115.54923 * 129.59731 * 16 15 14 26 26 H 1.08998 * 117.50042 * 359.97438 * 17 16 15 27 27 H 1.09002 * 117.50287 * 145.02187 * 17 16 15 28 28 H 1.08999 * 117.50004 * 214.97876 * 18 16 15 29 29 H 1.09001 * 117.49639 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2069 0.0000 4 7 1.3071 2.3013 -0.0005 5 6 1.8846 3.5106 -0.0010 6 6 1.0963 4.6862 -0.0021 7 1 1.5577 5.6457 -0.1833 8 6 -0.2828 4.6051 0.2318 9 7 -0.9910 5.6970 0.3485 10 14 -1.1077 2.9360 0.3846 11 1 -2.5594 3.1224 0.6355 12 1 -0.9170 2.1726 -0.8749 13 1 -0.5023 2.1863 1.5144 14 6 3.2916 3.5897 -0.0065 15 6 4.0141 2.4104 -0.0005 16 6 5.5208 2.4408 -0.0006 17 6 6.2008 3.7567 -0.3838 18 6 6.2247 2.5726 -1.3526 19 7 3.3686 1.2545 0.0000 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.5525 6.5623 0.3443 24 1 3.7927 4.5465 -0.0115 25 1 6.0034 1.8274 0.7604 26 1 5.5585 4.6003 -0.6362 27 1 7.1311 4.0094 0.1251 28 1 7.1706 2.0464 -1.4809 29 1 5.5980 2.6369 -2.2421 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260718291.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:42 Heat of formation + Delta-G solvation = 22.863641 kcal Electronic energy + Delta-G solvation = -14735.072164 eV Core-core repulsion = 12238.314402 eV Total energy + Delta-G solvation = -2496.757762 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.88527 -37.77938 -36.38482 -34.15914 -32.08455 -30.08831 -27.24904 -26.19670 -23.90226 -22.29436 -21.53067 -20.26924 -18.55371 -17.38067 -16.50099 -15.56620 -15.30224 -14.56176 -14.33651 -13.75992 -13.40643 -12.96333 -12.82839 -12.69230 -11.60784 -11.50800 -11.33284 -11.20446 -10.69507 -10.41136 -10.15038 -9.88169 -9.82305 -9.42447 -9.09843 -9.03583 -7.83947 -7.79555 -7.35061 -5.15071 2.28356 2.52759 3.36509 3.48363 3.51219 3.82247 4.14311 4.21530 4.53006 4.94030 5.19457 5.21320 5.35796 5.59007 5.71059 5.75145 5.83440 5.85176 6.02817 6.14282 6.21663 6.32661 6.40959 6.54345 6.86475 7.21655 7.25590 7.62000 7.77962 8.15588 8.35225 8.64860 9.50877 9.78869 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.028864 B = 0.011952 C = 0.008659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.835389 B = 2342.137500 C = 3232.875015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.523 3.477 4 N -0.649 5.649 5 C 0.288 3.712 6 C -0.457 4.457 7 H 0.089 0.911 8 C 0.043 3.957 9 N -0.791 5.791 10 Si 1.151 2.849 11 H -0.328 1.328 12 H -0.279 1.279 13 H -0.287 1.287 14 C -0.326 4.326 15 C 0.223 3.777 16 C -0.093 4.093 17 C -0.174 4.174 18 C -0.165 4.165 19 N -0.611 5.611 20 H 0.069 0.931 21 H 0.092 0.908 22 H 0.062 0.938 23 H 0.287 0.713 24 H 0.118 0.882 25 H 0.114 0.886 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.511 -3.782 -0.894 6.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.207 6.207 3 C 0.218 3.782 4 N -0.392 5.392 5 C 0.163 3.837 6 C -0.491 4.491 7 H 0.107 0.893 8 C -0.180 4.180 9 N -0.412 5.412 10 Si 0.987 3.013 11 H -0.261 1.261 12 H -0.207 1.207 13 H -0.216 1.216 14 C -0.352 4.352 15 C 0.088 3.912 16 C -0.112 4.112 17 C -0.211 4.211 18 C -0.203 4.203 19 N -0.345 5.345 20 H 0.087 0.913 21 H 0.110 0.890 22 H 0.081 0.919 23 H 0.098 0.902 24 H 0.136 0.864 25 H 0.132 0.868 26 H 0.119 0.881 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.736 -5.496 -0.717 6.684 hybrid contribution 1.763 1.911 -0.179 2.606 sum 5.499 -3.585 -0.896 6.625 Atomic orbital electron populations 1.23559 0.77759 1.02606 1.03354 1.85903 1.21875 1.24665 1.88299 1.20297 0.86185 0.83710 0.88015 1.66921 1.38629 0.99199 1.34461 1.18488 0.90118 0.89360 0.85759 1.20845 0.94731 0.93353 1.40176 0.89330 1.27907 0.94812 1.06604 0.88715 1.70625 1.40441 1.00297 1.29865 0.82304 0.70169 0.69791 0.79019 1.26079 1.20730 1.21603 1.22012 0.95048 0.98163 1.20015 1.19786 0.92792 0.87700 0.90909 1.20625 0.89965 1.00993 0.99611 1.23038 1.02070 0.92491 1.03496 1.22888 1.01672 1.01964 0.93733 1.67016 1.06360 1.29544 1.31553 0.91286 0.88998 0.91925 0.90200 0.86390 0.86790 0.88139 0.88629 0.88726 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.19 101.05 0.93 1.36 15 2 O -0.30 -6.92 10.55 -18.06 -0.19 -7.11 15 3 C 0.52 13.17 8.49 -91.38 -0.78 12.40 15 4 N -0.65 -16.87 4.17 -12.67 -0.05 -16.92 15 5 C 0.29 7.53 6.41 -84.64 -0.54 6.99 15 6 C -0.46 -12.07 9.62 -37.62 -0.36 -12.43 15 7 H 0.09 2.30 8.06 -52.48 -0.42 1.88 15 8 C 0.04 1.12 5.52 -17.34 -0.10 1.03 15 9 N -0.79 -20.70 13.65 55.55 0.76 -19.94 15 10 Si 1.15 27.26 22.49 -169.99 -3.82 23.44 15 11 H -0.33 -7.60 7.11 56.52 0.40 -7.19 15 12 H -0.28 -6.40 5.12 56.52 0.29 -6.11 15 13 H -0.29 -6.84 5.78 56.52 0.33 -6.51 15 14 C -0.33 -7.67 9.20 -38.54 -0.35 -8.03 15 15 C 0.22 5.00 6.50 -82.32 -0.53 4.47 15 16 C -0.09 -1.62 6.24 -91.78 -0.57 -2.19 15 17 C -0.17 -2.48 9.82 -26.73 -0.26 -2.74 15 18 C -0.17 -2.42 10.23 -26.73 -0.27 -2.70 15 19 N -0.61 -15.02 10.38 -11.03 -0.11 -15.14 15 20 H 0.07 1.33 5.96 -51.93 -0.31 1.02 15 21 H 0.09 1.29 8.14 -51.93 -0.42 0.87 15 22 H 0.06 1.21 5.04 -51.93 -0.26 0.95 15 23 H 0.29 7.12 8.73 -40.82 -0.36 6.76 15 24 H 0.12 2.53 6.37 -52.48 -0.33 2.19 15 25 H 0.11 1.85 8.14 -51.93 -0.42 1.43 15 26 H 0.10 1.51 6.45 -51.93 -0.34 1.17 15 27 H 0.10 1.12 8.14 -51.93 -0.42 0.69 15 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 29 H 0.09 1.46 8.14 -51.93 -0.42 1.04 15 LS Contribution 241.78 15.07 3.64 3.64 Total: -1.00 -29.23 241.78 -5.74 -34.97 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -3.12 Total: -1.09 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.85 Total: -1.85 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.59 Total: -52.01 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.19 Total: -7.11 kcal Atomic # 14 Polarization: 27.26 SS G_CDS: -3.82 Total: 23.44 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -29.23 -5.74 -34.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260718291.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.835 kcal (2) G-P(sol) polarization free energy of solvation -29.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds