Wall clock time and date at job start Mon Mar 30 2020 02:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35457 * 116.99950 * 2 1 4 4 N 1.31932 * 119.04826 * 359.97438 * 3 2 1 5 5 C 1.34012 * 120.51991 * 180.02562 * 4 3 2 6 6 C 1.41542 * 120.62549 * 179.97438 * 5 4 3 7 7 H 1.08003 * 120.00253 * 191.14154 * 6 5 4 8 8 C 1.40108 * 120.00102 * 11.14244 * 6 5 4 9 9 N 1.30676 * 120.00166 * 173.94407 * 8 6 5 10 10 Si 1.86802 * 120.00083 * 354.22233 * 8 6 5 11 11 H 1.48494 * 109.47481 * 179.72512 * 10 8 6 12 12 H 1.48508 * 109.46845 * 299.72594 * 10 8 6 13 13 H 1.48496 * 109.46984 * 59.72201 * 10 8 6 14 14 C 1.40928 * 118.74619 * 0.25325 * 5 4 3 15 15 C 1.38302 * 118.27158 * 359.50280 * 14 5 4 16 16 C 1.50701 * 120.33642 * 180.23759 * 15 14 5 17 17 C 1.52996 * 117.49962 * 343.88923 * 16 15 14 18 18 C 1.52996 * 117.50165 * 275.26085 * 16 15 14 19 19 N 1.32400 * 119.32755 * 0.50197 * 15 14 5 20 20 H 1.08999 * 109.47386 * 60.00394 * 1 2 3 21 21 H 1.09002 * 109.46838 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47783 * 300.00090 * 1 2 3 23 23 H 0.97006 * 119.99806 * 355.10592 * 9 8 6 24 24 H 1.08006 * 120.86077 * 179.72833 * 14 5 4 25 25 H 1.09004 * 115.54923 * 129.59731 * 16 15 14 26 26 H 1.08998 * 117.50042 * 359.97438 * 17 16 15 27 27 H 1.09002 * 117.50287 * 145.02187 * 17 16 15 28 28 H 1.08999 * 117.50004 * 214.97876 * 18 16 15 29 29 H 1.09001 * 117.49639 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2069 0.0000 4 7 1.3071 2.3013 -0.0005 5 6 1.8846 3.5106 -0.0010 6 6 1.0963 4.6862 -0.0021 7 1 1.5577 5.6457 -0.1833 8 6 -0.2828 4.6051 0.2318 9 7 -0.9910 5.6970 0.3485 10 14 -1.1077 2.9360 0.3846 11 1 -2.5594 3.1224 0.6355 12 1 -0.9170 2.1726 -0.8749 13 1 -0.5023 2.1863 1.5144 14 6 3.2916 3.5897 -0.0065 15 6 4.0141 2.4104 -0.0005 16 6 5.5208 2.4408 -0.0006 17 6 6.2008 3.7567 -0.3838 18 6 6.2247 2.5726 -1.3526 19 7 3.3686 1.2545 0.0000 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.5525 6.5623 0.3443 24 1 3.7927 4.5465 -0.0115 25 1 6.0034 1.8274 0.7604 26 1 5.5585 4.6003 -0.6362 27 1 7.1311 4.0094 0.1251 28 1 7.1706 2.0464 -1.4809 29 1 5.5980 2.6369 -2.2421 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260718291.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:42 Heat of formation + Delta-G solvation = 2.197911 kcal Electronic energy + Delta-G solvation = -14735.968297 eV Core-core repulsion = 12238.314402 eV Total energy + Delta-G solvation = -2497.653895 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.72325 -39.39992 -37.88075 -36.07401 -33.99697 -31.90780 -28.94874 -28.01071 -25.51525 -23.82579 -23.01011 -21.94692 -20.44952 -19.12288 -18.28496 -17.31106 -16.84660 -16.28252 -15.84902 -15.41866 -15.22591 -14.75417 -14.55701 -14.49450 -13.47019 -13.13988 -12.81370 -12.49598 -12.24703 -12.10269 -11.76797 -11.59311 -11.36396 -11.31794 -10.90149 -10.79497 -9.76824 -9.68244 -9.31047 -7.15910 0.45637 0.56294 1.45215 1.59356 1.80798 1.94982 2.32455 2.53231 2.93646 3.38045 3.47227 3.79857 3.96201 4.06131 4.31270 4.34460 4.38503 4.45963 4.59541 4.66751 4.78782 4.92354 5.02349 5.19690 5.23428 5.27834 5.43413 5.69322 5.83260 6.23978 6.39583 6.72371 7.59271 7.79373 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.028864 B = 0.011952 C = 0.008659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.835389 B = 2342.137500 C = 3232.875015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.309 6.309 3 C 0.506 3.494 4 N -0.659 5.659 5 C 0.272 3.728 6 C -0.481 4.481 7 H 0.082 0.918 8 C 0.018 3.982 9 N -0.807 5.807 10 Si 1.175 2.825 11 H -0.321 1.321 12 H -0.271 1.271 13 H -0.292 1.292 14 C -0.340 4.340 15 C 0.226 3.774 16 C -0.123 4.123 17 C -0.153 4.153 18 C -0.151 4.151 19 N -0.620 5.620 20 H 0.061 0.939 21 H 0.144 0.856 22 H 0.053 0.947 23 H 0.288 0.712 24 H 0.134 0.866 25 H 0.129 0.871 26 H 0.090 0.910 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.004 -4.805 -1.047 8.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.212 6.212 3 C 0.201 3.799 4 N -0.403 5.403 5 C 0.146 3.854 6 C -0.516 4.516 7 H 0.100 0.900 8 C -0.202 4.202 9 N -0.429 5.429 10 Si 1.008 2.992 11 H -0.254 1.254 12 H -0.199 1.199 13 H -0.221 1.221 14 C -0.365 4.365 15 C 0.090 3.910 16 C -0.142 4.142 17 C -0.191 4.191 18 C -0.188 4.188 19 N -0.354 5.354 20 H 0.080 0.920 21 H 0.162 0.838 22 H 0.072 0.928 23 H 0.099 0.901 24 H 0.152 0.848 25 H 0.146 0.854 26 H 0.108 0.892 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.223 -6.512 -0.878 8.394 hybrid contribution 1.392 2.150 -0.144 2.565 sum 6.614 -4.362 -1.023 7.989 Atomic orbital electron populations 1.23853 0.75736 1.05816 1.02475 1.85924 1.23869 1.23438 1.87959 1.20710 0.86773 0.84336 0.88034 1.66932 1.39164 0.99394 1.34799 1.18775 0.91497 0.89418 0.85694 1.20870 0.95201 0.93423 1.42101 0.89989 1.28565 0.95236 1.07968 0.88388 1.70633 1.40575 1.00520 1.31204 0.82062 0.69930 0.68091 0.79120 1.25354 1.19903 1.22140 1.22216 0.94237 0.99602 1.20449 1.20579 0.95386 0.86594 0.88423 1.20764 0.86797 1.04386 1.02236 1.23159 1.02505 0.90985 1.02411 1.22999 1.02062 1.02048 0.91734 1.67196 1.06258 1.30602 1.31363 0.92023 0.83832 0.92817 0.90085 0.84803 0.85368 0.89185 0.85164 0.85449 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.19 113.37 1.04 1.61 15 2 O -0.31 -13.66 10.55 -87.55 -0.92 -14.59 15 3 C 0.51 25.21 8.49 180.62 1.53 26.75 15 4 N -0.66 -34.21 4.17 -307.14 -1.28 -35.50 15 5 C 0.27 14.33 6.41 40.28 0.26 14.59 15 6 C -0.48 -25.91 9.62 23.54 0.23 -25.68 15 7 H 0.08 4.38 8.06 -2.91 -0.02 4.35 15 8 C 0.02 0.98 5.52 85.32 0.47 1.45 15 9 N -0.81 -42.74 13.65 21.85 0.30 -42.44 15 10 Si 1.17 55.15 22.49 68.60 1.54 56.69 15 11 H -0.32 -14.51 7.11 99.48 0.71 -13.81 15 12 H -0.27 -12.26 5.12 99.48 0.51 -11.75 15 13 H -0.29 -13.84 5.78 99.48 0.57 -13.27 15 14 C -0.34 -15.86 9.20 22.94 0.21 -15.65 15 15 C 0.23 9.86 6.50 42.49 0.28 10.14 15 16 C -0.12 -3.96 6.24 -11.54 -0.07 -4.03 15 17 C -0.15 -3.85 9.82 30.59 0.30 -3.55 15 18 C -0.15 -3.93 10.23 30.59 0.31 -3.62 15 19 N -0.62 -29.93 10.38 -301.65 -3.13 -33.06 15 20 H 0.06 2.28 5.96 -2.39 -0.01 2.27 15 21 H 0.14 3.54 8.14 -2.39 -0.02 3.52 15 22 H 0.05 2.01 5.04 -2.39 -0.01 2.00 15 23 H 0.29 14.57 8.73 -92.70 -0.81 13.76 15 24 H 0.13 5.66 6.37 -2.91 -0.02 5.65 15 25 H 0.13 3.77 8.14 -2.38 -0.02 3.75 15 26 H 0.09 2.48 6.45 -2.39 -0.02 2.46 15 27 H 0.13 2.40 8.14 -2.39 -0.02 2.38 15 28 H 0.13 2.50 8.14 -2.39 -0.02 2.48 15 29 H 0.08 2.27 8.14 -2.39 -0.02 2.25 15 Total: -1.00 -62.70 241.78 1.86 -60.84 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 0.80 Total: 6.05 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 4.56 Total: 2.00 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -4.12 Total: -111.00 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.92 Total: -14.59 kcal Atomic # 14 Polarization: 55.15 SS G_CDS: 1.54 Total: 56.69 kcal Total: -62.70 1.86 -60.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260718291.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.033 kcal (2) G-P(sol) polarization free energy of solvation -62.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds