Wall clock time and date at job start Mon Mar 30 2020 02:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35265 * 117.00157 * 2 1 4 4 N 1.32568 * 120.68189 * 0.02589 * 3 2 1 5 5 C 1.31871 * 120.98707 * 179.97438 * 4 3 2 6 6 C 1.50700 * 118.77300 * 179.97438 * 5 4 3 7 7 C 1.52991 * 117.50381 * 188.74871 * 6 5 4 8 8 C 1.52995 * 117.50230 * 120.08394 * 6 5 4 9 9 N 1.32048 * 122.46038 * 0.02562 * 5 4 3 10 10 C 1.32009 * 121.25204 * 359.67867 * 9 5 4 11 11 C 1.40922 * 118.83159 * 0.57177 * 10 9 5 12 12 C 1.41173 * 121.08671 * 179.74642 * 11 10 9 13 13 H 1.07995 * 120.00393 * 154.76115 * 12 11 10 14 14 C 1.39969 * 119.99538 * 334.76353 * 12 11 10 15 15 N 1.30851 * 119.99643 * 334.92530 * 14 12 11 16 16 Si 1.86797 * 120.00084 * 154.92845 * 14 12 11 17 17 H 1.48494 * 109.47057 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.46845 * 299.99763 * 16 14 12 19 19 H 1.48504 * 109.47222 * 59.99525 * 16 14 12 20 20 H 1.09000 * 109.47141 * 299.99695 * 1 2 3 21 21 H 1.09002 * 109.46831 * 59.99631 * 1 2 3 22 22 H 1.09003 * 109.47314 * 179.97438 * 1 2 3 23 23 H 1.09009 * 115.54458 * 334.41584 * 6 5 4 24 24 H 1.09005 * 117.49951 * 0.02562 * 7 6 5 25 25 H 1.09003 * 117.50166 * 145.01938 * 7 6 5 26 26 H 1.08997 * 117.50349 * 214.97987 * 8 6 5 27 27 H 1.09000 * 117.49821 * 359.97438 * 8 6 5 28 28 H 1.08000 * 120.58621 * 180.30705 * 10 9 5 29 29 H 0.97000 * 120.00222 * 354.22387 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0432 1.2052 0.0000 4 7 1.3345 2.3255 0.0005 5 6 1.9269 3.5037 0.0010 6 6 1.0727 4.7452 0.0010 7 6 1.7772 6.0876 -0.2048 8 6 1.2322 5.7125 1.1755 9 7 3.2407 3.6363 0.0006 10 6 4.0355 2.5823 0.0059 11 6 3.4589 1.2964 -0.0002 12 6 4.2639 0.1366 -0.0003 13 1 3.8752 -0.7905 0.3943 14 6 5.5658 0.1885 -0.5117 15 7 5.8831 1.0928 -1.4025 16 14 6.8500 -1.0333 0.0776 17 1 8.1381 -0.7689 -0.6124 18 1 7.0346 -0.8888 1.5439 19 1 6.3981 -2.4139 -0.2308 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 0.0756 4.6297 -0.4241 24 1 2.8587 6.0728 -0.3406 25 1 1.2436 6.8554 -0.7649 26 1 0.3402 6.2338 1.5230 27 1 1.9547 5.4508 1.9486 28 1 5.1087 2.7032 0.0104 29 1 5.1980 1.6725 -1.7705 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261170483.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:51 Heat of formation + Delta-G solvation = 14.794541 kcal Electronic energy + Delta-G solvation = -14584.790777 eV Core-core repulsion = 12087.683113 eV Total energy + Delta-G solvation = -2497.107664 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.67577 -37.47950 -36.10574 -34.42540 -31.59257 -30.12337 -26.63153 -25.99467 -23.08959 -22.30395 -21.78541 -20.27257 -18.22168 -17.06075 -16.74298 -15.14443 -14.91270 -14.38536 -14.04838 -13.80570 -13.53707 -13.01884 -12.55114 -12.15381 -11.42531 -11.31578 -11.22971 -11.03328 -10.76727 -10.63144 -10.49300 -9.99011 -9.91243 -9.54352 -9.09993 -8.85744 -8.10387 -7.82575 -7.40845 -4.59541 2.34764 2.61382 3.07668 3.14958 3.28889 3.87164 4.09874 4.25102 4.57437 4.95141 5.28857 5.43043 5.53415 5.76554 5.78912 5.87082 5.88092 6.05486 6.13019 6.24878 6.34360 6.62212 6.67022 6.75860 6.88772 7.36843 7.65805 7.73554 7.92138 8.33228 8.46051 8.72001 9.62643 9.78125 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.029610 B = 0.009665 C = 0.007644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.412239 B = 2896.472788 C = 3662.137256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.302 6.302 3 C 0.238 3.762 4 N -0.539 5.539 5 C 0.202 3.798 6 C -0.058 4.058 7 C -0.165 4.165 8 C -0.173 4.173 9 N -0.492 5.492 10 C 0.017 3.983 11 C 0.000 4.000 12 C -0.471 4.471 13 H 0.089 0.911 14 C 0.034 3.966 15 N -0.780 5.780 16 Si 1.072 2.928 17 H -0.271 1.271 18 H -0.271 1.271 19 H -0.273 1.273 20 H 0.046 0.954 21 H 0.046 0.954 22 H 0.081 0.919 23 H 0.106 0.894 24 H 0.105 0.895 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.151 0.849 29 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.105 0.996 2.006 4.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.208 6.208 3 C 0.046 3.954 4 N -0.267 5.267 5 C -0.060 4.060 6 C -0.078 4.078 7 C -0.203 4.203 8 C -0.212 4.212 9 N -0.207 5.207 10 C -0.150 4.150 11 C -0.008 4.008 12 C -0.499 4.499 13 H 0.107 0.893 14 C -0.189 4.189 15 N -0.402 5.402 16 Si 0.894 3.106 17 H -0.195 1.195 18 H -0.197 1.197 19 H -0.198 1.198 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.100 0.900 23 H 0.124 0.876 24 H 0.124 0.876 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.108 0.892 28 H 0.168 0.832 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.973 1.189 1.803 3.675 hybrid contribution -1.524 -0.283 0.104 1.554 sum -4.497 0.907 1.906 4.968 Atomic orbital electron populations 1.22581 0.79997 1.01171 1.01278 1.86108 1.20274 1.25254 1.89137 1.20131 0.89279 0.83493 1.02507 1.66984 1.42383 0.98769 1.18546 1.20423 0.87156 0.89214 1.09190 1.20115 0.97929 0.86731 1.03020 1.22901 1.01712 0.96850 0.98819 1.22906 1.02592 1.03523 0.92150 1.67305 1.05209 1.35463 1.12744 1.22769 0.98753 0.86305 1.07194 1.18535 0.89326 0.96049 0.96901 1.20503 0.98626 0.97180 1.33626 0.89327 1.27299 0.99468 0.99160 0.93011 1.70503 1.39770 1.13582 1.16345 0.83536 0.75004 0.74776 0.77325 1.19541 1.19665 1.19780 0.93552 0.93511 0.90030 0.87594 0.87631 0.89557 0.89424 0.89180 0.83153 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.84 10.41 101.05 1.05 1.89 15 2 O -0.30 -7.15 9.91 -17.49 -0.17 -7.33 15 3 C 0.24 6.19 7.57 -15.85 -0.12 6.07 15 4 N -0.54 -13.43 9.26 -10.18 -0.09 -13.52 15 5 C 0.20 4.87 7.31 -156.91 -1.15 3.72 15 6 C -0.06 -1.13 6.22 -91.78 -0.57 -1.70 15 7 C -0.17 -2.78 10.00 -26.70 -0.27 -3.05 15 8 C -0.17 -2.90 10.24 -26.70 -0.27 -3.17 15 9 N -0.49 -12.37 9.28 -10.14 -0.09 -12.47 15 10 C 0.02 0.43 9.24 -16.46 -0.15 0.28 15 11 C 0.00 -0.01 5.33 -106.38 -0.57 -0.58 15 12 C -0.47 -12.19 8.73 -37.82 -0.33 -12.52 15 13 H 0.09 2.27 7.79 -52.49 -0.41 1.86 15 14 C 0.03 0.81 4.99 -17.32 -0.09 0.73 15 15 N -0.78 -19.83 12.35 55.55 0.69 -19.15 15 16 Si 1.07 20.42 30.00 -169.99 -5.10 15.32 15 17 H -0.27 -5.11 7.11 56.52 0.40 -4.71 15 18 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 19 H -0.27 -4.95 7.11 56.52 0.40 -4.54 15 20 H 0.05 0.83 8.12 -51.93 -0.42 0.41 15 21 H 0.05 0.84 8.12 -51.93 -0.42 0.42 15 22 H 0.08 1.19 8.14 -51.93 -0.42 0.76 15 23 H 0.11 1.92 8.14 -51.92 -0.42 1.49 15 24 H 0.11 1.95 7.52 -51.93 -0.39 1.56 15 25 H 0.09 1.21 8.14 -51.93 -0.42 0.78 15 26 H 0.09 1.21 8.14 -51.93 -0.42 0.79 15 27 H 0.09 1.62 8.14 -51.93 -0.42 1.20 15 28 H 0.15 3.90 6.58 -52.49 -0.35 3.55 15 29 H 0.30 7.94 6.65 -40.82 -0.27 7.67 15 LS Contribution 257.66 15.07 3.88 3.88 Total: -1.00 -28.40 257.66 -6.52 -34.92 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -3.17 Total: 6.66 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -2.46 Total: -8.33 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.50 Total: -45.13 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.17 Total: -7.33 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.10 Total: 15.32 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.40 -6.52 -34.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170483.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.719 kcal (2) G-P(sol) polarization free energy of solvation -28.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds