Wall clock time and date at job start Mon Mar 30 2020 02:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35582 * 116.99886 * 2 1 4 4 C 1.39204 * 121.00267 * 359.72074 * 3 2 1 5 5 N 1.32252 * 119.14693 * 179.78561 * 4 3 2 6 6 C 1.32138 * 121.38928 * 0.48189 * 5 4 3 7 7 C 1.50699 * 118.87542 * 179.74856 * 6 5 4 8 8 C 1.52997 * 117.49842 * 8.77040 * 7 6 5 9 9 C 1.52992 * 117.49920 * 300.10942 * 7 6 5 10 10 N 1.31286 * 122.24947 * 359.77234 * 6 5 4 11 11 C 1.34152 * 120.65720 * 359.97438 * 10 6 5 12 12 C 1.41109 * 120.71593 * 180.02562 * 11 10 6 13 13 H 1.07998 * 119.99837 * 179.97438 * 12 11 10 14 14 C 1.40157 * 120.00277 * 359.97438 * 12 11 10 15 15 N 1.30671 * 119.99954 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00032 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47093 * 59.99932 * 16 14 12 18 18 H 1.48502 * 109.47187 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47124 * 299.99802 * 16 14 12 20 20 H 1.09002 * 109.47382 * 59.99828 * 1 2 3 21 21 H 1.09001 * 109.46938 * 299.99814 * 1 2 3 22 22 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 23 23 H 1.07996 * 120.42698 * 0.02562 * 4 3 2 24 24 H 1.08997 * 115.54815 * 154.43601 * 7 6 5 25 25 H 1.09008 * 117.49992 * 359.97438 * 8 7 6 26 26 H 1.08999 * 117.49688 * 145.02112 * 8 7 6 27 27 H 1.09003 * 117.50094 * 214.98202 * 9 7 6 28 28 H 1.09003 * 117.50259 * 359.97438 * 9 7 6 29 29 H 0.97005 * 120.00151 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2081 0.0000 4 6 1.3069 2.3886 -0.0058 5 7 1.9451 3.5469 -0.0013 6 6 3.2652 3.6054 -0.0009 7 6 3.9338 4.9559 -0.0014 8 6 3.0452 6.1842 0.2046 9 6 3.6376 5.8904 -1.1760 10 7 4.0142 2.5271 -0.0005 11 6 3.4567 1.3070 0.0000 12 6 4.2605 0.1472 0.0010 13 1 3.7994 -0.8294 0.0018 14 6 5.6573 0.2626 0.0009 15 7 6.2152 1.4443 -0.0006 16 14 6.7214 -1.2727 0.0029 17 1 6.4280 -2.0798 -1.2086 18 1 8.1541 -0.8820 0.0018 19 1 6.4280 -2.0767 1.2164 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.2274 2.3590 -0.0100 24 1 4.9373 4.9838 0.4233 25 1 1.9768 6.0155 0.3400 26 1 3.4642 7.0204 0.7643 27 1 4.4460 6.5334 -1.5239 28 1 2.9594 5.5283 -1.9486 29 1 7.1820 1.5242 -0.0010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261217287.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:23 Heat of formation + Delta-G solvation = 10.041999 kcal Electronic energy + Delta-G solvation = -14599.167702 eV Core-core repulsion = 12101.853952 eV Total energy + Delta-G solvation = -2497.313750 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.25295 -39.09351 -37.42086 -35.84999 -33.33298 -31.47668 -28.26461 -28.13986 -24.93253 -23.96625 -23.10564 -21.62456 -19.45832 -18.47407 -18.27657 -16.95563 -16.65245 -16.47066 -15.60969 -14.98015 -14.87226 -14.56514 -14.37008 -13.11659 -13.01550 -12.97059 -12.80757 -12.41660 -12.32060 -12.21855 -11.95601 -11.60640 -11.42315 -11.24905 -11.07414 -10.55297 -9.36573 -9.14437 -8.37337 -6.64873 0.72456 0.90130 1.40148 1.53853 1.55801 2.20518 2.72258 2.76015 3.12205 3.52658 3.76079 3.86194 4.09673 4.20031 4.36540 4.41209 4.45171 4.63340 4.68450 4.73549 4.82482 4.96331 5.13265 5.19167 5.33708 5.44976 5.89743 6.08287 6.21894 6.64146 6.90563 7.11203 8.17316 8.34168 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.021723 B = 0.012014 C = 0.007919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.655580 B = 2330.006175 C = 3535.110019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.328 6.328 3 C -0.098 4.098 4 C 0.047 3.953 5 N -0.600 5.600 6 C 0.296 3.704 7 C -0.106 4.106 8 C -0.138 4.138 9 C -0.149 4.149 10 N -0.525 5.525 11 C 0.227 3.773 12 C -0.433 4.433 13 H 0.093 0.907 14 C 0.022 3.978 15 N -0.739 5.739 16 Si 0.995 3.005 17 H -0.258 1.258 18 H -0.262 1.262 19 H -0.258 1.258 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.118 0.882 23 H 0.164 0.836 24 H 0.110 0.890 25 H 0.093 0.907 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.357 1.220 -0.361 3.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.241 6.241 3 C -0.151 4.151 4 C -0.109 4.109 5 N -0.324 5.324 6 C 0.026 3.974 7 C -0.126 4.126 8 C -0.176 4.176 9 C -0.187 4.187 10 N -0.247 5.247 11 C 0.096 3.904 12 C -0.467 4.467 13 H 0.111 0.889 14 C -0.202 4.202 15 N -0.361 5.361 16 Si 0.814 3.186 17 H -0.182 1.182 18 H -0.186 1.186 19 H -0.182 1.182 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.137 0.863 23 H 0.181 0.819 24 H 0.128 0.872 25 H 0.111 0.889 26 H 0.139 0.861 27 H 0.139 0.861 28 H 0.094 0.906 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.719 1.991 -0.354 3.389 hybrid contribution -0.366 -1.384 0.006 1.431 sum -3.085 0.608 -0.348 3.164 Atomic orbital electron populations 1.23153 0.78248 1.04746 1.01033 1.85867 1.21779 1.26226 1.90202 1.20948 0.94492 0.86166 1.13530 1.22899 0.99814 0.87252 1.00926 1.67705 1.10775 1.28094 1.25875 1.22439 0.86571 0.94736 0.93642 1.20451 0.99386 0.85720 1.07074 1.22959 0.99433 0.96508 0.98686 1.22905 1.03369 1.01110 0.91346 1.69195 1.37291 0.96704 1.21492 1.18913 0.87182 0.92750 0.91538 1.19879 0.91938 0.92949 1.41933 0.88910 1.27122 0.99526 1.01045 0.92503 1.70159 1.12648 1.26298 1.26998 0.85079 0.76569 0.76761 0.80222 1.18209 1.18604 1.18189 0.92970 0.92956 0.86345 0.81860 0.87231 0.88860 0.86052 0.86102 0.90622 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 9.84 113.37 1.12 1.84 15 2 O -0.33 -15.02 9.76 -88.91 -0.87 -15.89 15 3 C -0.10 -5.12 6.76 23.32 0.16 -4.96 15 4 C 0.05 2.25 10.32 84.86 0.88 3.13 15 5 N -0.60 -29.88 9.30 -187.54 -1.74 -31.62 15 6 C 0.30 15.47 7.31 138.80 1.01 16.48 15 7 C -0.11 -4.50 6.22 -11.54 -0.07 -4.57 15 8 C -0.14 -4.56 10.01 30.62 0.31 -4.25 15 9 C -0.15 -5.08 10.24 30.62 0.31 -4.76 15 10 N -0.52 -30.59 7.93 -181.15 -1.44 -32.03 15 11 C 0.23 13.22 6.59 40.31 0.27 13.48 15 12 C -0.43 -24.23 9.00 23.44 0.21 -24.02 15 13 H 0.09 4.99 7.42 -2.91 -0.02 4.97 15 14 C 0.02 1.13 5.50 85.33 0.47 1.59 15 15 N -0.74 -39.67 11.52 21.86 0.25 -39.42 15 16 Si 0.99 37.91 29.56 68.60 2.03 39.93 15 17 H -0.26 -9.53 7.11 99.48 0.71 -8.82 15 18 H -0.26 -9.29 7.11 99.48 0.71 -8.58 15 19 H -0.26 -9.52 7.11 99.48 0.71 -8.81 15 20 H 0.05 1.51 7.70 -2.39 -0.02 1.49 15 21 H 0.05 1.51 7.73 -2.39 -0.02 1.49 15 22 H 0.12 2.86 8.14 -2.38 -0.02 2.84 15 23 H 0.16 6.37 6.48 -2.91 -0.02 6.35 15 24 H 0.11 4.67 8.14 -2.39 -0.02 4.65 15 25 H 0.09 3.30 7.53 -2.38 -0.02 3.29 15 26 H 0.12 3.13 8.14 -2.39 -0.02 3.11 15 27 H 0.12 3.32 8.14 -2.39 -0.02 3.30 15 28 H 0.08 2.78 8.14 -2.39 -0.02 2.76 15 29 H 0.29 13.68 8.29 -92.70 -0.77 12.91 15 Total: -1.00 -68.16 257.02 4.05 -64.12 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 1.16 Total: 20.94 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 4.66 Total: -6.04 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -2.93 Total: -103.06 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.87 Total: -15.89 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.93 kcal Total: -68.16 4.05 -64.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261217287.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.158 kcal (2) G-P(sol) polarization free energy of solvation -68.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds