Wall clock time and date at job start Mon Mar 30 2020 02:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35114 * 124.76270 * 2 1 4 4 C 1.39525 * 107.98605 * 180.18315 * 3 2 1 5 5 C 1.41347 * 127.23002 * 179.83879 * 4 3 2 6 6 H 1.08000 * 120.00045 * 189.57230 * 5 4 3 7 7 C 1.39680 * 120.00109 * 9.57457 * 5 4 3 8 8 N 1.31055 * 119.99583 * 9.09317 * 7 5 4 9 9 Si 1.86799 * 119.99822 * 189.09796 * 7 5 4 10 10 H 1.48497 * 109.46873 * 265.01106 * 9 7 5 11 11 H 1.48492 * 109.47242 * 25.01699 * 9 7 5 12 12 H 1.48508 * 109.47010 * 145.01528 * 9 7 5 13 13 C 1.46087 * 105.53708 * 359.57803 * 4 3 2 14 14 C 1.34807 * 107.02444 * 0.23963 * 13 4 3 15 15 C 1.50691 * 123.29302 * 180.02562 * 14 13 4 16 16 N 1.45692 * 110.23396 * 344.95316 * 15 14 13 17 17 C 1.33154 * 125.39321 * 15.41111 * 16 15 14 18 18 O 1.21280 * 117.94879 * 179.44807 * 17 16 15 19 19 C 1.50274 * 128.83317 * 180.18751 * 13 4 3 20 20 H 1.09001 * 109.47363 * 270.31663 * 1 2 3 21 21 H 1.09002 * 109.47167 * 30.31240 * 1 2 3 22 22 H 1.09000 * 109.46712 * 150.31451 * 1 2 3 23 23 H 1.07994 * 126.00257 * 0.05063 * 3 2 1 24 24 H 0.97003 * 119.99394 * 180.02562 * 8 7 5 25 25 H 1.09006 * 109.34366 * 105.18336 * 15 14 13 26 26 H 1.09005 * 109.34812 * 224.86810 * 15 14 13 27 27 H 0.96996 * 117.30058 * 195.39757 * 16 15 14 28 28 H 1.09008 * 109.51436 * 314.41306 * 19 13 4 29 29 H 1.08995 * 109.51422 * 74.57378 * 19 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2354 1.1100 0.0000 4 6 3.5712 0.7073 -0.0042 5 6 4.7148 1.5380 -0.0089 6 1 5.6932 1.1090 -0.1674 7 6 4.5796 2.9137 0.1916 8 7 3.4246 3.4117 0.5596 9 14 6.0450 4.0434 -0.0650 10 1 6.7221 4.2787 1.2354 11 1 6.9978 3.4108 -1.0121 12 1 5.5797 5.3388 -0.6224 13 6 3.5397 -0.7532 0.0035 14 6 2.2424 -1.1200 0.0062 15 6 1.7891 -2.5571 0.0147 16 7 2.8964 -3.4368 -0.3356 17 6 4.1827 -3.0927 -0.3414 18 8 4.9961 -3.9389 -0.6467 19 6 4.6896 -1.7206 0.0070 20 1 -0.3634 0.0057 1.0276 21 1 -0.3633 0.8872 -0.5187 22 1 -0.3633 -0.8928 -0.5089 23 1 1.8796 2.1296 0.0008 24 1 3.3306 4.3672 0.6984 25 1 1.4241 -2.8147 1.0090 26 1 0.9850 -2.6864 -0.7098 27 1 2.6785 -4.3484 -0.5851 28 1 5.4301 -1.4087 -0.7297 29 1 5.1456 -1.7406 0.9967 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261282719.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:30 Heat of formation + Delta-G solvation = 5.084223 kcal Electronic energy + Delta-G solvation = -14704.944791 eV Core-core repulsion = 12207.416056 eV Total energy + Delta-G solvation = -2497.528735 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.17598 -38.65455 -34.87343 -33.62333 -32.06180 -29.21709 -28.44484 -26.80119 -23.65366 -23.51698 -20.57230 -19.32141 -17.44788 -16.34123 -15.96849 -15.76327 -15.41567 -14.95987 -14.22828 -14.12499 -13.10246 -13.05690 -12.76084 -12.35329 -12.05005 -11.69527 -11.25326 -11.22481 -11.06272 -10.82365 -10.68112 -10.02081 -9.68165 -9.14498 -9.06909 -8.80819 -7.12685 -6.62091 -6.39591 -3.94316 3.10260 3.14250 3.23788 3.29905 3.39603 3.67074 4.15059 4.25419 4.27471 5.24258 5.28974 5.43064 5.57348 5.61485 5.73269 5.83690 5.90098 6.15370 6.45560 6.59034 6.95050 7.05708 7.43008 7.49093 7.70833 7.85767 8.04267 8.37437 8.67548 8.77651 9.00259 9.26977 9.29024 10.62229 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.029878 B = 0.010021 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.926017 B = 2793.553143 C = 3685.300306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.442 5.442 3 C -0.096 4.096 4 C 0.037 3.963 5 C -0.432 4.432 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.839 5.839 9 Si 0.907 3.093 10 H -0.276 1.276 11 H -0.266 1.266 12 H -0.282 1.282 13 C -0.221 4.221 14 C -0.049 4.049 15 C 0.201 3.799 16 N -0.714 5.714 17 C 0.530 3.470 18 O -0.577 6.577 19 C -0.040 4.040 20 H 0.055 0.945 21 H 0.072 0.928 22 H 0.062 0.938 23 H 0.177 0.823 24 H 0.269 0.731 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.393 0.607 28 H 0.097 0.903 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.279 -5.338 -0.251 8.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.122 5.122 3 C -0.223 4.223 4 C 0.032 3.968 5 C -0.466 4.466 6 H 0.087 0.913 7 C -0.147 4.147 8 N -0.470 5.470 9 Si 0.734 3.266 10 H -0.202 1.202 11 H -0.190 1.190 12 H -0.207 1.207 13 C -0.232 4.232 14 C -0.160 4.160 15 C 0.076 3.924 16 N -0.365 5.365 17 C 0.319 3.681 18 O -0.457 6.457 19 C -0.079 4.079 20 H 0.073 0.927 21 H 0.090 0.910 22 H 0.081 0.919 23 H 0.194 0.806 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.228 0.772 28 H 0.115 0.885 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.242 -5.246 -0.288 8.159 hybrid contribution 0.257 0.434 -0.109 0.516 sum -5.986 -4.812 -0.398 7.690 Atomic orbital electron populations 1.21688 0.80486 1.02393 1.01472 1.42821 1.04039 1.05444 1.59891 1.22897 0.89889 0.89297 1.20184 1.17978 0.92112 0.87955 0.98749 1.18713 0.93310 0.90925 1.43666 0.91299 1.25586 0.96578 0.98705 0.93846 1.69660 1.24662 1.13432 1.39275 0.86310 0.81957 0.79428 0.78939 1.20216 1.19037 1.20740 1.19888 0.90883 0.94798 1.17658 1.19109 0.91220 0.86994 1.18660 1.19245 0.87581 0.86260 0.99329 1.45160 1.06470 1.14959 1.69950 1.20522 0.81518 0.91053 0.75038 1.90679 1.53324 1.51468 1.50260 1.19589 0.97468 0.87863 1.03014 0.92671 0.90953 0.91894 0.80605 0.92025 0.91938 0.91623 0.77222 0.88495 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.87 59.85 0.65 1.89 15 2 N -0.44 -9.21 3.09 -118.89 -0.37 -9.58 15 3 C -0.10 -2.41 10.33 -15.63 -0.16 -2.57 15 4 C 0.04 0.98 6.06 -105.09 -0.64 0.35 15 5 C -0.43 -11.81 9.40 -37.86 -0.36 -12.17 15 6 H 0.07 1.83 7.86 -52.49 -0.41 1.42 15 7 C 0.06 1.63 5.45 -17.34 -0.09 1.54 15 8 N -0.84 -22.23 10.66 55.54 0.59 -21.63 15 9 Si 0.91 19.89 29.57 -169.99 -5.03 14.86 15 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 11 H -0.27 -5.81 7.11 56.52 0.40 -5.40 15 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 13 C -0.22 -5.17 6.23 -102.90 -0.64 -5.81 15 14 C -0.05 -1.01 6.81 -81.81 -0.56 -1.56 15 15 C 0.20 3.09 7.05 -5.63 -0.04 3.05 15 16 N -0.71 -11.54 5.40 -62.56 -0.34 -11.88 15 17 C 0.53 10.43 7.81 -11.87 -0.09 10.33 15 18 O -0.58 -12.65 17.75 5.56 0.10 -12.56 15 19 C -0.04 -0.83 6.29 -29.41 -0.19 -1.02 15 20 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.07 1.01 8.13 -51.93 -0.42 0.59 15 22 H 0.06 0.76 7.45 -51.93 -0.39 0.37 15 23 H 0.18 4.60 6.13 -52.49 -0.32 4.28 15 24 H 0.27 6.62 8.30 -40.82 -0.34 6.28 15 25 H 0.06 0.86 8.14 -51.93 -0.42 0.43 15 26 H 0.07 0.84 7.68 -51.93 -0.40 0.44 15 27 H 0.39 5.27 8.76 -40.82 -0.36 4.91 15 28 H 0.10 2.05 8.14 -51.92 -0.42 1.63 15 29 H 0.09 1.84 8.14 -51.93 -0.42 1.42 15 LS Contribution 250.96 15.07 3.78 3.78 Total: -1.00 -31.06 250.96 -6.50 -37.56 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -3.12 Total: 5.42 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -2.11 Total: -5.97 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.11 Total: -43.10 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.10 Total: -12.56 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.06 -6.50 -37.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282719.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.646 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds