Wall clock time and date at job start Mon Mar 30 2020 02:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35114 * 124.76270 * 2 1 4 4 C 1.39525 * 107.98605 * 180.18315 * 3 2 1 5 5 C 1.41347 * 127.23002 * 179.83879 * 4 3 2 6 6 H 1.08000 * 120.00045 * 189.57230 * 5 4 3 7 7 C 1.39680 * 120.00109 * 9.57457 * 5 4 3 8 8 N 1.31055 * 119.99583 * 9.09317 * 7 5 4 9 9 Si 1.86799 * 119.99822 * 189.09796 * 7 5 4 10 10 H 1.48497 * 109.46873 * 265.01106 * 9 7 5 11 11 H 1.48492 * 109.47242 * 25.01699 * 9 7 5 12 12 H 1.48508 * 109.47010 * 145.01528 * 9 7 5 13 13 C 1.46087 * 105.53708 * 359.57803 * 4 3 2 14 14 C 1.34807 * 107.02444 * 0.23963 * 13 4 3 15 15 C 1.50691 * 123.29302 * 180.02562 * 14 13 4 16 16 N 1.45692 * 110.23396 * 344.95316 * 15 14 13 17 17 C 1.33154 * 125.39321 * 15.41111 * 16 15 14 18 18 O 1.21280 * 117.94879 * 179.44807 * 17 16 15 19 19 C 1.50274 * 128.83317 * 180.18751 * 13 4 3 20 20 H 1.09001 * 109.47363 * 270.31663 * 1 2 3 21 21 H 1.09002 * 109.47167 * 30.31240 * 1 2 3 22 22 H 1.09000 * 109.46712 * 150.31451 * 1 2 3 23 23 H 1.07994 * 126.00257 * 0.05063 * 3 2 1 24 24 H 0.97003 * 119.99394 * 180.02562 * 8 7 5 25 25 H 1.09006 * 109.34366 * 105.18336 * 15 14 13 26 26 H 1.09005 * 109.34812 * 224.86810 * 15 14 13 27 27 H 0.96996 * 117.30058 * 195.39757 * 16 15 14 28 28 H 1.09008 * 109.51436 * 314.41306 * 19 13 4 29 29 H 1.08995 * 109.51422 * 74.57378 * 19 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2354 1.1100 0.0000 4 6 3.5712 0.7073 -0.0042 5 6 4.7148 1.5380 -0.0089 6 1 5.6932 1.1090 -0.1674 7 6 4.5796 2.9137 0.1916 8 7 3.4246 3.4117 0.5596 9 14 6.0450 4.0434 -0.0650 10 1 6.7221 4.2787 1.2354 11 1 6.9978 3.4108 -1.0121 12 1 5.5797 5.3388 -0.6224 13 6 3.5397 -0.7532 0.0035 14 6 2.2424 -1.1200 0.0062 15 6 1.7891 -2.5571 0.0147 16 7 2.8964 -3.4368 -0.3356 17 6 4.1827 -3.0927 -0.3414 18 8 4.9961 -3.9389 -0.6467 19 6 4.6896 -1.7206 0.0070 20 1 -0.3634 0.0057 1.0276 21 1 -0.3633 0.8872 -0.5187 22 1 -0.3633 -0.8928 -0.5089 23 1 1.8796 2.1296 0.0008 24 1 3.3306 4.3672 0.6984 25 1 1.4241 -2.8147 1.0090 26 1 0.9850 -2.6864 -0.7098 27 1 2.6785 -4.3484 -0.5851 28 1 5.4301 -1.4087 -0.7297 29 1 5.1456 -1.7406 0.9967 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261282719.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:30 Heat of formation + Delta-G solvation = -16.355723 kcal Electronic energy + Delta-G solvation = -14705.874497 eV Core-core repulsion = 12207.416056 eV Total energy + Delta-G solvation = -2498.458441 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.78589 -40.25544 -36.36556 -35.47003 -33.72756 -30.88280 -29.94068 -28.50124 -25.34662 -25.07360 -22.11766 -21.13940 -19.08409 -17.97786 -17.55954 -17.44246 -16.91896 -16.65764 -15.88977 -15.56635 -14.60611 -14.37847 -14.32036 -14.06768 -13.64203 -13.23520 -12.99322 -12.93570 -12.77674 -12.43726 -12.30479 -11.78194 -11.58371 -11.02076 -10.75023 -10.18026 -8.94491 -8.38851 -8.31560 -5.94342 1.37265 1.42961 1.55630 1.56440 1.77099 2.24200 2.35922 2.37296 2.71429 3.61718 3.78384 3.87972 4.26522 4.40730 4.50313 4.58178 4.64993 4.80224 4.83250 4.92987 5.18882 5.43300 5.60698 5.93616 5.95756 6.17774 6.25361 6.55741 6.93049 7.17486 7.24241 7.33419 7.37641 8.68402 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.029878 B = 0.010021 C = 0.007596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.926017 B = 2793.553143 C = 3685.300306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.442 5.442 3 C -0.116 4.116 4 C -0.009 4.009 5 C -0.469 4.469 6 H 0.058 0.942 7 C 0.019 3.981 8 N -0.863 5.863 9 Si 0.974 3.026 10 H -0.270 1.270 11 H -0.268 1.268 12 H -0.272 1.272 13 C -0.262 4.262 14 C -0.026 4.026 15 C 0.202 3.798 16 N -0.697 5.697 17 C 0.533 3.467 18 O -0.604 6.604 19 C -0.037 4.037 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.103 0.897 23 H 0.159 0.841 24 H 0.274 0.726 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.413 0.587 28 H 0.081 0.919 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.076 -6.664 -0.302 10.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.120 5.120 3 C -0.244 4.244 4 C -0.014 4.014 5 C -0.503 4.503 6 H 0.076 0.924 7 C -0.187 4.187 8 N -0.495 5.495 9 Si 0.798 3.202 10 H -0.196 1.196 11 H -0.192 1.192 12 H -0.197 1.197 13 C -0.273 4.273 14 C -0.139 4.139 15 C 0.078 3.922 16 N -0.349 5.349 17 C 0.321 3.679 18 O -0.487 6.487 19 C -0.077 4.077 20 H 0.091 0.909 21 H 0.094 0.906 22 H 0.121 0.879 23 H 0.176 0.824 24 H 0.084 0.916 25 H 0.115 0.885 26 H 0.129 0.871 27 H 0.251 0.749 28 H 0.099 0.901 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.112 -6.590 -0.337 10.457 hybrid contribution 0.681 0.794 -0.077 1.049 sum -7.431 -5.796 -0.414 9.433 Atomic orbital electron populations 1.22082 0.76669 1.04684 1.03318 1.43054 1.06354 1.04228 1.58413 1.22575 0.90289 0.89989 1.21541 1.18436 0.92803 0.90072 1.00116 1.18960 0.93467 0.92314 1.45543 0.92409 1.26351 0.99400 0.99662 0.93330 1.69747 1.26145 1.13902 1.39738 0.85292 0.78547 0.77507 0.78871 1.19572 1.19188 1.19670 1.20151 0.93141 0.93901 1.20089 1.19853 0.90375 0.89405 1.14310 1.19603 0.87710 0.82242 1.02693 1.44968 1.05336 1.16083 1.68492 1.20134 0.82647 0.89887 0.75188 1.90669 1.54443 1.51785 1.51800 1.19485 0.96835 0.88773 1.02612 0.90915 0.90571 0.87871 0.82368 0.91579 0.88538 0.87126 0.74938 0.90074 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.92 10.87 127.77 1.39 3.31 15 2 N -0.44 -17.64 3.09 -530.05 -1.64 -19.27 15 3 C -0.12 -5.94 10.33 84.50 0.87 -5.06 15 4 C -0.01 -0.50 6.06 -20.17 -0.12 -0.62 15 5 C -0.47 -26.91 9.40 23.38 0.22 -26.69 15 6 H 0.06 3.27 7.86 -2.91 -0.02 3.25 15 7 C 0.02 1.05 5.45 85.16 0.46 1.51 15 8 N -0.86 -47.18 10.66 21.79 0.23 -46.95 15 9 Si 0.97 41.95 29.57 68.60 2.03 43.98 15 10 H -0.27 -11.28 7.11 99.48 0.71 -10.58 15 11 H -0.27 -11.43 7.11 99.48 0.71 -10.73 15 12 H -0.27 -11.14 7.11 99.48 0.71 -10.44 15 13 C -0.26 -12.37 6.23 -18.75 -0.12 -12.49 15 14 C -0.03 -1.02 6.81 41.07 0.28 -0.74 15 15 C 0.20 5.16 7.05 85.78 0.60 5.77 15 16 N -0.70 -19.91 5.40 -471.12 -2.54 -22.45 15 17 C 0.53 20.26 7.81 87.80 0.69 20.94 15 18 O -0.60 -25.94 17.75 -3.03 -0.05 -25.99 15 19 C -0.04 -1.59 6.29 28.86 0.18 -1.41 15 20 H 0.07 1.69 8.14 -2.39 -0.02 1.67 15 21 H 0.08 1.94 8.13 -2.39 -0.02 1.92 15 22 H 0.10 1.88 7.45 -2.39 -0.02 1.86 15 23 H 0.16 8.59 6.13 -2.91 -0.02 8.57 15 24 H 0.27 13.78 8.30 -92.71 -0.77 13.01 15 25 H 0.10 2.02 8.14 -2.38 -0.02 2.00 15 26 H 0.11 2.02 7.68 -2.38 -0.02 2.00 15 27 H 0.41 9.21 8.76 -92.71 -0.81 8.39 15 28 H 0.08 3.63 8.14 -2.38 -0.02 3.61 15 29 H 0.09 3.76 8.14 -2.39 -0.02 3.74 15 Total: -1.00 -70.74 250.96 2.85 -67.89 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.37 Total: 18.28 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 4.46 Total: -15.48 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -3.95 Total: -88.68 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.05 Total: -25.99 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -70.74 2.85 -67.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261282719.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.533 kcal (2) G-P(sol) polarization free energy of solvation -70.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds