Wall clock time and date at job start Mon Mar 30 2020 02:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34778 * 120.00188 * 2 1 4 4 O 1.21552 * 119.99850 * 0.02562 * 3 2 1 5 5 C 1.47856 * 120.00195 * 179.97438 * 3 2 1 6 6 C 1.39663 * 120.10082 * 359.97438 * 5 3 2 7 7 C 1.38025 * 120.03622 * 179.97438 * 6 5 3 8 8 C 1.38196 * 120.24400 * 0.04687 * 7 6 5 9 9 C 1.39152 * 120.20065 * 359.95517 * 8 7 6 10 10 N 1.39332 * 120.01835 * 180.02562 * 9 8 7 11 11 C 1.36845 * 119.99997 * 359.97062 * 10 9 8 12 12 H 1.08003 * 119.99906 * 0.02562 * 11 10 9 13 13 C 1.38793 * 119.99791 * 179.97438 * 11 10 9 14 14 N 1.31593 * 120.00239 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99903 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47162 * 90.00252 * 15 13 11 17 17 H 1.48502 * 109.47269 * 210.00504 * 15 13 11 18 18 H 1.48507 * 109.47015 * 330.00418 * 15 13 11 19 19 C 1.38855 * 119.96602 * 0.02562 * 9 8 7 20 20 H 1.09005 * 109.46985 * 59.99302 * 1 2 3 21 21 H 1.08995 * 109.46923 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46610 * 299.99719 * 1 2 3 23 23 H 0.97000 * 119.99492 * 180.02562 * 2 1 3 24 24 H 1.08007 * 119.98184 * 0.02562 * 6 5 3 25 25 H 1.07999 * 119.88398 * 180.02562 * 7 6 5 26 26 H 1.08000 * 119.90230 * 179.97438 * 8 7 6 27 27 H 0.97007 * 119.99803 * 179.97438 * 10 9 8 28 28 H 0.97003 * 119.99836 * 179.97438 * 14 13 11 29 29 H 1.07997 * 120.12327 * 179.72415 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5312 2.2199 0.0005 5 6 3.6176 1.1672 0.0006 6 6 4.3180 -0.0411 0.0017 7 6 5.6982 -0.0395 0.0017 8 6 6.3930 1.1551 0.0016 9 6 5.7052 2.3648 0.0005 10 7 6.4095 3.5670 -0.0001 11 6 7.7779 3.5584 0.0009 12 1 8.3120 2.6197 0.0018 13 6 8.4794 4.7560 -0.0003 14 7 7.8286 5.8997 -0.0018 15 14 10.3474 4.7442 0.0004 16 1 10.8429 4.7395 -1.3996 17 1 10.8498 5.9544 0.6993 18 1 10.8345 3.5294 0.7020 19 6 4.3167 2.3732 0.0001 20 1 -0.3633 0.5140 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3632 0.5138 0.8900 23 1 1.9500 -0.8401 -0.0004 24 1 3.7793 -0.9772 0.0017 25 1 6.2374 -0.9753 0.0021 26 1 7.4730 1.1499 0.0020 27 1 5.9297 4.4102 -0.0012 28 1 8.3190 6.7367 -0.0023 29 1 3.7803 3.3105 0.0038 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306340575.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:44 Heat of formation + Delta-G solvation = -32.113797 kcal Electronic energy + Delta-G solvation = -13996.791487 eV Core-core repulsion = 11497.649724 eV Total energy + Delta-G solvation = -2499.141762 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.01927 -39.48652 -36.70591 -35.63594 -33.75084 -31.86914 -30.05817 -27.61464 -26.57067 -24.01404 -22.85175 -21.32266 -19.55735 -19.13306 -17.23896 -17.05090 -16.53587 -16.27693 -16.18228 -15.68789 -14.69815 -14.54427 -14.28789 -14.24496 -13.77888 -13.49529 -13.06864 -12.91471 -12.76082 -12.17018 -12.02932 -11.92933 -11.80007 -10.97627 -10.62135 -10.17721 -9.65381 -8.58166 -8.45882 -5.72571 0.15051 0.87857 1.41861 1.47747 1.54888 2.02877 2.25100 2.33852 2.96067 3.40318 3.43129 3.91090 4.23132 4.41726 4.50148 4.64650 4.65491 4.86833 4.96455 5.07556 5.18278 5.31725 5.44169 5.62176 5.70086 5.77514 5.92373 6.31012 6.60261 6.81636 7.25773 7.49469 7.62877 8.73252 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.058843 B = 0.006015 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.729779 B = 4653.764367 C = 5114.349421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.714 5.714 3 C 0.555 3.445 4 O -0.591 6.591 5 C -0.093 4.093 6 C -0.186 4.186 7 C -0.060 4.060 8 C -0.214 4.214 9 C 0.184 3.816 10 N -0.593 5.593 11 C -0.315 4.315 12 H 0.111 0.889 13 C -0.038 4.038 14 N -0.938 5.938 15 Si 1.001 2.999 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.256 1.256 19 C -0.198 4.198 20 H 0.049 0.951 21 H 0.120 0.880 22 H 0.049 0.951 23 H 0.419 0.581 24 H 0.155 0.845 25 H 0.155 0.845 26 H 0.117 0.883 27 H 0.388 0.612 28 H 0.273 0.727 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.496 -15.242 0.027 16.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.367 5.367 3 C 0.344 3.656 4 O -0.473 6.473 5 C -0.097 4.097 6 C -0.208 4.208 7 C -0.079 4.079 8 C -0.238 4.238 9 C 0.067 3.933 10 N -0.198 5.198 11 C -0.445 4.445 12 H 0.128 0.872 13 C -0.235 4.235 14 N -0.578 5.578 15 Si 0.825 3.175 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.179 1.179 19 C -0.224 4.224 20 H 0.068 0.932 21 H 0.138 0.862 22 H 0.068 0.932 23 H 0.257 0.743 24 H 0.172 0.828 25 H 0.172 0.828 26 H 0.135 0.865 27 H 0.220 0.780 28 H 0.082 0.918 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.629 -14.228 0.033 15.697 hybrid contribution 0.730 1.001 -0.016 1.239 sum -5.899 -13.228 0.018 14.483 Atomic orbital electron populations 1.21741 0.78175 1.04655 1.01425 1.45602 1.08518 1.08092 1.74443 1.18650 0.87822 0.83956 0.75167 1.90703 1.71011 1.33368 1.52168 1.19506 0.91502 0.94430 1.04284 1.20964 0.94290 0.95952 1.09605 1.21047 0.94012 0.97199 0.95644 1.20882 0.99845 0.91313 1.11808 1.18145 0.90758 0.87776 0.96609 1.41041 1.05782 1.04253 1.68715 1.20064 0.81825 0.94988 1.47589 0.87157 1.26245 1.05545 0.94179 0.97550 1.69827 1.38389 0.98217 1.51326 0.84779 0.76012 0.78246 0.78499 1.19874 1.20966 1.17936 1.20363 0.91912 0.97697 1.12409 0.93246 0.86152 0.93239 0.74257 0.82781 0.82777 0.86491 0.77969 0.91798 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.49 10.70 127.77 1.37 2.86 15 2 N -0.71 -16.30 5.66 -487.44 -2.76 -19.06 15 3 C 0.56 19.40 7.77 86.79 0.67 20.08 15 4 O -0.59 -25.84 16.34 -3.88 -0.06 -25.91 15 5 C -0.09 -3.43 5.87 -20.11 -0.12 -3.55 15 6 C -0.19 -5.34 9.54 22.56 0.22 -5.12 15 7 C -0.06 -1.84 10.02 22.21 0.22 -1.62 15 8 C -0.21 -8.54 9.30 22.48 0.21 -8.33 15 9 C 0.18 8.58 6.61 38.32 0.25 8.84 15 10 N -0.59 -31.35 5.43 -184.38 -1.00 -32.36 15 11 C -0.32 -16.75 9.55 84.04 0.80 -15.95 15 12 H 0.11 5.45 5.67 -2.91 -0.02 5.43 15 13 C -0.04 -1.99 5.50 84.86 0.47 -1.52 15 14 N -0.94 -53.47 13.05 21.65 0.28 -53.19 15 15 Si 1.00 41.53 29.55 68.60 2.03 43.55 15 16 H -0.27 -11.03 7.11 99.48 0.71 -10.32 15 17 H -0.28 -11.73 7.11 99.48 0.71 -11.03 15 18 H -0.26 -9.88 7.11 99.48 0.71 -9.17 15 19 C -0.20 -8.90 9.44 22.70 0.21 -8.69 15 20 H 0.05 1.00 8.14 -2.38 -0.02 0.98 15 21 H 0.12 1.02 8.14 -2.39 -0.02 1.00 15 22 H 0.05 1.00 8.14 -2.39 -0.02 0.98 15 23 H 0.42 6.46 6.86 -92.71 -0.64 5.83 15 24 H 0.15 2.83 6.40 -2.91 -0.02 2.81 15 25 H 0.15 3.37 8.06 -2.91 -0.02 3.35 15 26 H 0.12 4.68 5.94 -2.91 -0.02 4.66 15 27 H 0.39 21.69 7.90 -92.70 -0.73 20.96 15 28 H 0.27 14.70 8.31 -92.71 -0.77 13.93 15 29 H 0.09 4.55 7.65 -2.91 -0.02 4.53 15 Total: -1.00 -68.66 256.89 2.62 -66.04 By element: Atomic # 1 Polarization: 34.10 SS G_CDS: -0.17 Total: 33.93 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 4.31 Total: -13.01 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -3.48 Total: -104.61 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.06 Total: -25.91 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.55 kcal Total: -68.66 2.62 -66.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306340575.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.928 kcal (2) G-P(sol) polarization free energy of solvation -68.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds