Wall clock time and date at job start Mon Mar 30 2020 02:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46491 * 120.00246 * 2 1 4 4 C 1.50700 * 109.47659 * 270.00351 * 3 2 1 5 5 H 1.08004 * 119.99469 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00604 * 179.97438 * 4 3 2 7 7 N 1.31522 * 119.99641 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00432 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.46735 * 60.00065 * 8 6 4 10 10 H 1.48492 * 109.47427 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47298 * 300.00331 * 8 6 4 12 12 C 1.38910 * 119.99755 * 180.02562 * 2 1 3 13 13 C 1.39509 * 120.38417 * 359.97438 * 12 2 1 14 14 C 1.38145 * 118.44094 * 179.97438 * 13 12 2 15 15 C 1.39814 * 119.14647 * 0.02562 * 14 13 12 16 16 C 1.47120 * 119.65610 * 180.02562 * 15 14 13 17 17 O 1.21274 * 120.00055 * 0.02562 * 16 15 14 18 18 N 1.33052 * 120.68949 * 0.02562 * 15 14 13 19 19 C 1.31203 * 121.69499 * 0.02562 * 18 15 14 20 20 H 1.09001 * 109.46489 * 269.99841 * 1 2 3 21 21 H 1.08994 * 109.47098 * 29.99633 * 1 2 3 22 22 H 1.08996 * 109.47330 * 150.00044 * 1 2 3 23 23 H 1.09005 * 109.47324 * 30.00617 * 3 2 1 24 24 H 1.09007 * 109.47421 * 150.00156 * 3 2 1 25 25 H 0.97000 * 119.99534 * 180.02562 * 7 6 4 26 26 H 1.07997 * 120.78191 * 0.25653 * 13 12 2 27 27 H 1.08001 * 120.42557 * 179.97438 * 14 13 12 28 28 H 1.07995 * 120.00386 * 180.02562 * 16 15 14 29 29 H 1.08001 * 119.60331 * 180.02562 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1260 2.8779 -1.6727 7 7 3.5534 3.6180 -0.6730 8 14 3.4380 3.4170 -3.4338 9 1 2.1406 3.5938 -4.1344 10 1 4.1793 4.7036 -3.4338 11 1 4.2413 2.3823 -4.1333 12 6 2.1595 -1.2030 -0.0005 13 6 1.4701 -2.4158 -0.0005 14 6 2.2009 -3.5881 -0.0016 15 6 3.5974 -3.5200 -0.0021 16 6 4.3868 -4.7614 -0.0039 17 8 3.8259 -5.8367 -0.0053 18 7 4.2199 -2.3440 -0.0011 19 6 3.5557 -1.2125 0.0010 20 1 -0.3632 0.0000 1.0277 21 1 -0.3633 0.8900 -0.5137 22 1 -0.3634 -0.8899 -0.5138 23 1 1.6085 2.0283 0.5139 24 1 3.1500 1.1383 0.5138 25 1 4.0296 4.4443 -0.8503 26 1 0.3903 -2.4378 -0.0043 27 1 1.7000 -4.5449 -0.0013 28 1 5.4657 -4.7153 -0.0038 29 1 4.0955 -0.2771 0.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703453012.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:21 Heat of formation + Delta-G solvation = -10.405481 kcal Electronic energy + Delta-G solvation = -14193.555796 eV Core-core repulsion = 11695.355377 eV Total energy + Delta-G solvation = -2498.200419 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.33966 -39.64357 -37.74467 -34.90060 -33.15100 -31.56114 -29.89963 -27.57137 -25.72144 -24.22766 -23.39643 -21.58149 -18.71120 -18.51738 -17.95806 -17.26736 -16.48398 -16.00279 -15.78296 -15.44965 -15.24921 -14.91998 -14.28324 -14.17316 -13.89239 -13.59952 -13.28556 -13.07715 -12.64000 -12.48471 -12.05454 -11.91817 -11.18224 -11.06449 -10.64997 -10.49314 -10.32228 -8.48615 -8.06582 -6.39254 -0.18814 0.40098 1.40096 1.41970 1.48652 1.51661 2.24820 2.42802 3.02716 3.06676 3.25047 3.71571 3.91467 4.01993 4.30804 4.38406 4.52503 4.64839 4.74779 4.88283 4.98884 5.04484 5.19631 5.23020 5.60806 5.63912 5.99999 6.21072 6.35359 6.54107 6.74650 7.08737 7.32398 8.81277 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.034992 B = 0.007245 C = 0.006541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.987294 B = 3863.606881 C = 4279.611111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.597 5.597 3 C 0.256 3.744 4 C -0.548 4.548 5 H 0.053 0.947 6 C 0.020 3.980 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.275 1.275 12 C 0.208 3.792 13 C -0.191 4.191 14 C -0.055 4.055 15 C -0.095 4.095 16 C 0.423 3.577 17 O -0.501 6.501 18 N -0.413 5.413 19 C 0.009 3.991 20 H 0.066 0.934 21 H 0.067 0.933 22 H 0.085 0.915 23 H 0.024 0.976 24 H 0.022 0.978 25 H 0.269 0.731 26 H 0.163 0.837 27 H 0.155 0.845 28 H 0.140 0.860 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.984 -9.098 1.178 10.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.299 5.299 3 C 0.135 3.865 4 C -0.586 4.586 5 H 0.071 0.929 6 C -0.181 4.181 7 N -0.560 5.560 8 Si 0.783 3.217 9 H -0.194 1.194 10 H -0.206 1.206 11 H -0.200 1.200 12 C 0.094 3.906 13 C -0.221 4.221 14 C -0.076 4.076 15 C -0.231 4.231 16 C 0.283 3.717 17 O -0.375 6.375 18 N -0.125 5.125 19 C -0.160 4.160 20 H 0.085 0.915 21 H 0.086 0.914 22 H 0.103 0.897 23 H 0.042 0.958 24 H 0.040 0.960 25 H 0.078 0.922 26 H 0.180 0.820 27 H 0.173 0.827 28 H 0.156 0.844 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.430 -9.322 1.232 10.010 hybrid contribution -0.557 1.043 -0.808 1.432 sum -3.987 -8.279 0.424 9.199 Atomic orbital electron populations 1.21875 0.78115 1.03589 1.02176 1.47085 1.06639 1.03650 1.72538 1.19054 0.91707 0.79750 0.96016 1.21675 1.37078 1.06807 0.93078 0.92900 1.25682 0.94950 0.96302 1.01146 1.70004 1.38520 1.14753 1.32743 0.85606 0.78522 0.77529 0.80034 1.19423 1.20620 1.20000 1.19418 0.93084 0.87684 0.90380 1.21294 1.01583 0.89644 1.09582 1.22143 0.93895 0.99361 0.92220 1.22023 0.93254 0.94301 1.13556 1.23930 0.96003 0.84243 0.67499 1.90477 1.77062 1.31873 1.38101 1.67323 1.40806 0.97856 1.06482 1.22417 0.90482 0.96250 1.06852 0.91529 0.91379 0.89651 0.95791 0.95971 0.92247 0.81999 0.82726 0.84417 0.83649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.43 10.20 127.77 1.30 3.73 15 2 N -0.60 -22.71 2.97 -726.02 -2.16 -24.87 15 3 C 0.26 12.00 4.91 85.63 0.42 12.42 15 4 C -0.55 -28.29 9.39 25.60 0.24 -28.05 15 5 H 0.05 2.76 7.81 -2.91 -0.02 2.74 15 6 C 0.02 1.03 5.46 84.65 0.46 1.49 15 7 N -0.92 -50.94 13.29 21.45 0.28 -50.66 15 8 Si 0.96 41.87 29.54 68.60 2.03 43.90 15 9 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 15 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 12 C 0.21 7.64 6.57 38.66 0.25 7.89 15 13 C -0.19 -5.69 9.28 22.55 0.21 -5.48 15 14 C -0.06 -1.62 9.62 22.63 0.22 -1.40 15 15 C -0.10 -3.05 6.73 41.67 0.28 -2.77 15 16 C 0.42 11.41 11.66 70.15 0.82 12.23 15 17 O -0.50 -15.54 17.13 -3.01 -0.05 -15.59 15 18 N -0.41 -15.16 10.29 -184.64 -1.90 -17.06 15 19 C 0.01 0.36 10.37 85.12 0.88 1.25 15 20 H 0.07 1.63 8.14 -2.39 -0.02 1.61 15 21 H 0.07 2.05 8.07 -2.39 -0.02 2.03 15 22 H 0.09 1.98 6.22 -2.39 -0.01 1.97 15 23 H 0.02 1.18 8.07 -2.38 -0.02 1.16 15 24 H 0.02 1.12 6.20 -2.38 -0.01 1.11 15 25 H 0.27 14.11 8.31 -92.71 -0.77 13.34 15 26 H 0.16 3.74 6.24 -2.91 -0.02 3.72 15 27 H 0.16 3.84 7.63 -2.91 -0.02 3.82 15 28 H 0.14 2.81 8.06 -2.91 -0.02 2.79 15 29 H 0.15 6.43 6.14 -2.91 -0.02 6.41 15 Total: -1.00 -59.95 259.61 4.45 -55.49 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 1.16 Total: 7.48 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 5.09 Total: 1.31 kcal Atomic # 7 Polarization: -88.82 SS G_CDS: -3.77 Total: -92.59 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.05 Total: -15.59 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -59.95 4.45 -55.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703453012.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.089 kcal (2) G-P(sol) polarization free energy of solvation -59.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds