Wall clock time and date at job start Mon Mar 30 2020 02:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.39709 * 119.99660 * 2 1 4 4 C 1.39040 * 120.00367 * 359.97394 * 3 2 1 5 5 C 1.38216 * 120.23300 * 180.02562 * 4 3 2 6 6 C 1.38004 * 120.23420 * 0.02562 * 5 4 3 7 7 C 1.39648 * 120.00073 * 359.97438 * 6 5 4 8 8 C 1.47736 * 120.11964 * 180.02562 * 7 6 5 9 9 O 1.21592 * 120.00130 * 179.97438 * 8 7 6 10 10 N 1.34782 * 119.99973 * 359.97418 * 8 7 6 11 11 C 1.36866 * 119.99901 * 180.02562 * 10 8 7 12 12 H 1.08005 * 120.00497 * 0.02562 * 11 10 8 13 13 C 1.39049 * 119.99832 * 180.02562 * 11 10 8 14 14 N 1.31364 * 120.00068 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00007 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47390 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47505 * 119.99787 * 15 13 11 18 18 H 1.48498 * 109.47131 * 239.99846 * 15 13 11 19 19 C 1.38615 * 119.99779 * 179.97438 * 3 2 1 20 20 H 1.08990 * 109.47380 * 300.00169 * 1 2 3 21 21 H 1.09000 * 109.46638 * 60.00453 * 1 2 3 22 22 H 1.09001 * 109.47042 * 179.97438 * 1 2 3 23 23 H 0.96999 * 120.00080 * 179.97438 * 2 1 3 24 24 H 1.07999 * 119.88443 * 0.02562 * 4 3 2 25 25 H 1.08001 * 119.88508 * 180.02562 * 5 4 3 26 26 H 1.08003 * 120.00450 * 179.97438 * 6 5 4 27 27 H 0.97001 * 119.99579 * 0.02562 * 10 8 7 28 28 H 0.96995 * 120.00012 * 179.97438 * 14 13 11 29 29 H 1.08006 * 120.11788 * 359.70666 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1635 1.2100 0.0000 4 6 1.4683 2.4141 -0.0005 5 6 2.1546 3.6139 -0.0011 6 6 3.5345 3.6251 -0.0016 7 6 4.2426 2.4215 -0.0011 8 6 5.7200 2.4304 -0.0011 9 8 6.3343 1.3811 -0.0001 10 7 6.3868 3.6018 -0.0021 11 6 7.7554 3.6101 -0.0026 12 1 8.3012 2.6780 -0.0026 13 6 8.4433 4.8185 -0.0032 14 7 7.7796 5.9521 -0.0037 15 14 10.3112 4.8298 -0.0046 16 1 10.8148 3.4328 -0.0044 17 1 10.8011 5.5328 -1.2175 18 1 10.8029 5.5329 1.2075 19 6 3.5497 1.2100 0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.9501 -0.8400 0.0004 24 1 0.3884 2.4119 -0.0006 25 1 1.6089 4.5459 -0.0011 26 1 4.0670 4.5648 -0.0024 27 1 5.8966 4.4388 -0.0025 28 1 8.2594 6.7950 -0.0037 29 1 4.0917 0.2758 0.0057 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712038679.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:06 Heat of formation + Delta-G solvation = -11.656165 kcal Electronic energy + Delta-G solvation = -14038.643633 eV Core-core repulsion = 11540.388980 eV Total energy + Delta-G solvation = -2498.254653 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.30221 -37.64825 -35.04315 -34.03064 -31.38201 -30.47854 -29.35054 -25.71847 -25.22710 -22.47262 -21.65736 -19.16367 -18.14237 -17.24847 -15.92084 -15.39878 -15.07290 -14.56191 -14.23781 -14.01269 -13.44631 -13.25244 -13.20713 -12.74067 -12.12340 -12.02717 -11.59963 -11.22504 -11.14578 -10.70507 -10.35895 -10.24857 -9.87250 -9.58415 -8.43969 -8.39335 -8.03082 -7.16673 -6.51976 -3.85053 1.56711 1.99840 3.15470 3.23986 3.31656 3.60350 3.85277 4.12988 4.62227 4.95493 5.10002 5.29967 5.34421 5.41102 5.43768 5.62123 5.81565 5.90955 5.98110 6.24763 6.41589 6.65201 6.93611 7.05093 7.14807 7.47008 7.61191 7.86123 8.01686 8.56087 9.10704 9.48240 10.04040 10.65207 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.065035 B = 0.006047 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.437326 B = 4629.516805 C = 5044.810963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.759 5.759 3 C 0.199 3.801 4 C -0.197 4.197 5 C -0.081 4.081 6 C -0.157 4.157 7 C -0.050 4.050 8 C 0.465 3.535 9 O -0.599 6.599 10 N -0.543 5.543 11 C -0.294 4.294 12 H 0.108 0.892 13 C 0.023 3.977 14 N -0.890 5.890 15 Si 0.934 3.066 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.150 4.150 20 H 0.048 0.952 21 H 0.048 0.952 22 H 0.068 0.932 23 H 0.399 0.601 24 H 0.115 0.885 25 H 0.119 0.881 26 H 0.124 0.876 27 H 0.395 0.605 28 H 0.275 0.725 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.882 -4.531 0.006 13.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.391 5.391 3 C 0.098 3.902 4 C -0.220 4.220 5 C -0.100 4.100 6 C -0.178 4.178 7 C -0.054 4.054 8 C 0.253 3.747 9 O -0.486 6.486 10 N -0.177 5.177 11 C -0.424 4.424 12 H 0.126 0.874 13 C -0.181 4.181 14 N -0.530 5.530 15 Si 0.760 3.240 16 H -0.190 1.190 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.173 4.173 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.087 0.913 23 H 0.233 0.767 24 H 0.133 0.867 25 H 0.137 0.863 26 H 0.141 0.859 27 H 0.230 0.770 28 H 0.085 0.915 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.571 -4.955 0.005 13.512 hybrid contribution 0.698 0.354 0.001 0.782 sum -11.873 -4.601 0.006 12.733 Atomic orbital electron populations 1.21433 0.80772 1.01757 1.00746 1.44350 1.05217 1.05382 1.84129 1.17679 0.90884 0.86184 0.95464 1.20581 0.98969 0.91255 1.11218 1.20745 0.93940 0.97038 0.98230 1.21204 0.94157 0.97573 1.04849 1.20056 0.94344 0.92987 0.98003 1.17803 0.86097 0.84757 0.86032 1.90579 1.68980 1.31550 1.57500 1.41904 1.07298 1.06961 1.61507 1.19889 0.81277 0.94677 1.46580 0.87439 1.25381 1.01176 0.94565 0.96932 1.69602 1.36890 0.97763 1.48760 0.85730 0.81634 0.78782 0.77836 1.19008 1.20559 1.20563 1.20603 0.91174 0.98565 1.07004 0.93343 0.93348 0.91332 0.76717 0.86687 0.86261 0.85854 0.76998 0.91545 0.85411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 9.94 59.85 0.59 1.47 15 2 N -0.76 -9.33 5.89 -65.43 -0.39 -9.71 15 3 C 0.20 3.15 6.65 -83.83 -0.56 2.59 15 4 C -0.20 -2.90 9.31 -39.29 -0.37 -3.27 15 5 C -0.08 -1.25 10.02 -39.68 -0.40 -1.65 15 6 C -0.16 -2.91 9.54 -39.14 -0.37 -3.28 15 7 C -0.05 -1.06 5.87 -104.99 -0.62 -1.67 15 8 C 0.46 12.06 7.72 -12.38 -0.10 11.97 15 9 O -0.60 -17.36 15.92 5.28 0.08 -17.28 15 10 N -0.54 -14.45 5.23 -11.87 -0.06 -14.51 15 11 C -0.29 -8.35 9.68 -15.00 -0.15 -8.50 15 12 H 0.11 3.18 7.15 -52.48 -0.38 2.80 15 13 C 0.02 0.60 5.50 -17.45 -0.10 0.51 15 14 N -0.89 -24.10 13.05 55.50 0.72 -23.38 15 15 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 15 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 15 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 19 C -0.15 -2.85 9.44 -38.95 -0.37 -3.22 15 20 H 0.05 0.42 7.94 -51.93 -0.41 0.01 15 21 H 0.05 0.42 7.94 -51.93 -0.41 0.01 15 22 H 0.07 0.45 8.14 -51.93 -0.42 0.02 15 23 H 0.40 4.39 8.84 -40.82 -0.36 4.02 15 24 H 0.12 1.39 6.71 -52.49 -0.35 1.03 15 25 H 0.12 1.49 8.06 -52.49 -0.42 1.07 15 26 H 0.12 2.27 6.40 -52.48 -0.34 1.93 15 27 H 0.39 9.98 5.92 -40.82 -0.24 9.74 15 28 H 0.27 6.94 8.31 -40.82 -0.34 6.61 15 29 H 0.13 2.48 7.65 -52.48 -0.40 2.08 15 LS Contribution 257.69 15.07 3.88 3.88 Total: -1.00 -31.82 257.69 -6.07 -37.89 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -2.87 Total: 12.30 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.42 Total: -5.06 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.28 Total: -47.60 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.08 Total: -17.28 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.82 -6.07 -37.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712038679.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.236 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds