Wall clock time and date at job start Mon Mar 30 2020 02:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.39709 * 119.99660 * 2 1 4 4 C 1.39040 * 120.00367 * 359.97394 * 3 2 1 5 5 C 1.38216 * 120.23300 * 180.02562 * 4 3 2 6 6 C 1.38004 * 120.23420 * 0.02562 * 5 4 3 7 7 C 1.39648 * 120.00073 * 359.97438 * 6 5 4 8 8 C 1.47736 * 120.11964 * 180.02562 * 7 6 5 9 9 O 1.21592 * 120.00130 * 179.97438 * 8 7 6 10 10 N 1.34782 * 119.99973 * 359.97418 * 8 7 6 11 11 C 1.36866 * 119.99901 * 180.02562 * 10 8 7 12 12 H 1.08005 * 120.00497 * 0.02562 * 11 10 8 13 13 C 1.39049 * 119.99832 * 180.02562 * 11 10 8 14 14 N 1.31364 * 120.00068 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00007 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47390 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47505 * 119.99787 * 15 13 11 18 18 H 1.48498 * 109.47131 * 239.99846 * 15 13 11 19 19 C 1.38615 * 119.99779 * 179.97438 * 3 2 1 20 20 H 1.08990 * 109.47380 * 300.00169 * 1 2 3 21 21 H 1.09000 * 109.46638 * 60.00453 * 1 2 3 22 22 H 1.09001 * 109.47042 * 179.97438 * 1 2 3 23 23 H 0.96999 * 120.00080 * 179.97438 * 2 1 3 24 24 H 1.07999 * 119.88443 * 0.02562 * 4 3 2 25 25 H 1.08001 * 119.88508 * 180.02562 * 5 4 3 26 26 H 1.08003 * 120.00450 * 179.97438 * 6 5 4 27 27 H 0.97001 * 119.99579 * 0.02562 * 10 8 7 28 28 H 0.96995 * 120.00012 * 179.97438 * 14 13 11 29 29 H 1.08006 * 120.11788 * 359.70666 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1635 1.2100 0.0000 4 6 1.4683 2.4141 -0.0005 5 6 2.1546 3.6139 -0.0011 6 6 3.5345 3.6251 -0.0016 7 6 4.2426 2.4215 -0.0011 8 6 5.7200 2.4304 -0.0011 9 8 6.3343 1.3811 -0.0001 10 7 6.3868 3.6018 -0.0021 11 6 7.7554 3.6101 -0.0026 12 1 8.3012 2.6780 -0.0026 13 6 8.4433 4.8185 -0.0032 14 7 7.7796 5.9521 -0.0037 15 14 10.3112 4.8298 -0.0046 16 1 10.8148 3.4328 -0.0044 17 1 10.8011 5.5328 -1.2175 18 1 10.8029 5.5329 1.2075 19 6 3.5497 1.2100 0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3632 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.9501 -0.8400 0.0004 24 1 0.3884 2.4119 -0.0006 25 1 1.6089 4.5459 -0.0011 26 1 4.0670 4.5648 -0.0024 27 1 5.8966 4.4388 -0.0025 28 1 8.2594 6.7950 -0.0037 29 1 4.0917 0.2758 0.0057 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712038679.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:06 Heat of formation + Delta-G solvation = -34.590541 kcal Electronic energy + Delta-G solvation = -14039.638142 eV Core-core repulsion = 11540.388980 eV Total energy + Delta-G solvation = -2499.249162 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.87051 -39.37045 -36.22529 -36.12412 -33.42194 -31.89247 -30.62709 -27.23022 -26.66961 -24.06879 -23.00318 -20.89355 -20.13830 -18.71599 -17.29392 -17.02500 -16.50749 -16.32436 -15.73594 -15.57591 -14.98161 -14.66365 -14.53915 -14.43907 -13.58132 -13.31503 -12.94509 -12.93938 -12.68367 -12.31191 -12.12292 -12.03656 -11.61872 -11.01120 -10.51307 -10.13947 -9.81022 -8.56780 -8.32566 -6.02116 0.09228 0.66431 1.38646 1.40154 1.55665 2.13490 2.25654 2.59529 2.94856 3.17229 3.33105 4.05790 4.10303 4.37031 4.43389 4.44933 4.63904 4.75829 4.82793 4.98188 5.06814 5.31046 5.34734 5.56972 5.64199 5.80780 5.97832 6.47250 6.49951 6.82814 7.01203 7.42863 7.99865 8.60933 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.065035 B = 0.006047 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.437326 B = 4629.516805 C = 5044.810963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.754 5.754 3 C 0.207 3.793 4 C -0.181 4.181 5 C -0.069 4.069 6 C -0.168 4.168 7 C -0.081 4.081 8 C 0.459 3.541 9 O -0.641 6.641 10 N -0.550 5.550 11 C -0.340 4.340 12 H 0.082 0.918 13 C -0.010 4.010 14 N -0.910 5.910 15 Si 1.001 2.999 16 H -0.272 1.272 17 H -0.266 1.266 18 H -0.266 1.266 19 C -0.168 4.168 20 H 0.057 0.943 21 H 0.057 0.943 22 H 0.095 0.905 23 H 0.404 0.596 24 H 0.156 0.844 25 H 0.159 0.841 26 H 0.117 0.883 27 H 0.399 0.601 28 H 0.283 0.717 29 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.313 -4.046 0.005 15.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.384 5.384 3 C 0.103 3.897 4 C -0.204 4.204 5 C -0.087 4.087 6 C -0.189 4.189 7 C -0.085 4.085 8 C 0.249 3.751 9 O -0.532 6.532 10 N -0.184 5.184 11 C -0.470 4.470 12 H 0.100 0.900 13 C -0.211 4.211 14 N -0.549 5.549 15 Si 0.824 3.176 16 H -0.197 1.197 17 H -0.191 1.191 18 H -0.191 1.191 19 C -0.192 4.192 20 H 0.076 0.924 21 H 0.076 0.924 22 H 0.113 0.887 23 H 0.238 0.762 24 H 0.173 0.827 25 H 0.176 0.824 26 H 0.135 0.865 27 H 0.235 0.765 28 H 0.093 0.907 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.058 -4.473 0.004 15.709 hybrid contribution 1.213 0.111 0.001 1.218 sum -13.845 -4.362 0.006 14.516 Atomic orbital electron populations 1.21731 0.78143 1.04010 1.01491 1.44578 1.06856 1.04401 1.82586 1.17746 0.89665 0.88252 0.94057 1.21048 1.00876 0.90146 1.08348 1.21139 0.92401 0.99174 0.95990 1.21218 0.95787 0.96084 1.05842 1.19777 0.91486 0.95261 1.01971 1.18659 0.88341 0.83863 0.84218 1.90516 1.70680 1.32881 1.59078 1.41900 1.06966 1.07357 1.62204 1.19848 0.82331 0.94592 1.50182 0.89957 1.26228 1.05772 0.93641 0.95457 1.69653 1.38712 0.98261 1.48303 0.84759 0.75671 0.78505 0.78693 1.19684 1.19080 1.19087 1.20550 0.92951 0.97105 1.08629 0.92441 0.92448 0.88657 0.76194 0.82682 0.82373 0.86527 0.76534 0.90689 0.87079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.20 9.94 127.77 1.27 2.47 15 2 N -0.75 -16.33 5.89 -360.92 -2.13 -18.45 15 3 C 0.21 6.08 6.65 38.17 0.25 6.33 15 4 C -0.18 -4.60 9.31 22.46 0.21 -4.39 15 5 C -0.07 -1.90 10.02 22.21 0.22 -1.68 15 6 C -0.17 -6.20 9.54 22.55 0.22 -5.98 15 7 C -0.08 -3.58 5.87 -20.11 -0.12 -3.70 15 8 C 0.46 25.31 7.72 86.75 0.67 25.98 15 9 O -0.64 -39.75 15.92 -4.01 -0.06 -39.82 15 10 N -0.55 -30.93 5.23 -309.71 -1.62 -32.55 15 11 C -0.34 -20.29 9.68 84.10 0.81 -19.48 15 12 H 0.08 5.21 7.15 -2.91 -0.02 5.19 15 13 C -0.01 -0.53 5.50 84.96 0.47 -0.06 15 14 N -0.91 -49.74 13.05 21.68 0.28 -49.45 15 15 Si 1.00 43.32 29.55 68.60 2.03 45.34 15 16 H -0.27 -11.95 7.11 99.48 0.71 -11.25 15 17 H -0.27 -10.87 7.11 99.48 0.71 -10.17 15 18 H -0.27 -10.88 7.11 99.48 0.71 -10.17 15 19 C -0.17 -6.52 9.44 22.68 0.21 -6.30 15 20 H 0.06 0.71 7.94 -2.39 -0.02 0.69 15 21 H 0.06 0.71 7.94 -2.39 -0.02 0.69 15 22 H 0.09 0.81 8.14 -2.39 -0.02 0.79 15 23 H 0.40 8.08 8.84 -92.71 -0.82 7.26 15 24 H 0.16 2.76 6.71 -2.91 -0.02 2.74 15 25 H 0.16 3.17 8.06 -2.91 -0.02 3.15 15 26 H 0.12 4.37 6.40 -2.91 -0.02 4.35 15 27 H 0.40 21.17 5.92 -92.71 -0.55 20.62 15 28 H 0.28 14.22 8.31 -92.71 -0.77 13.45 15 29 H 0.11 4.55 7.65 -2.91 -0.02 4.53 15 Total: -1.00 -72.40 257.69 2.54 -69.87 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: -0.18 Total: 31.87 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 4.22 Total: -6.81 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -3.46 Total: -100.45 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -0.06 Total: -39.82 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -72.40 2.54 -69.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712038679.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.275 kcal (2) G-P(sol) polarization free energy of solvation -72.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds