Wall clock time and date at job start Mon Mar 30 2020 02:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40095 * 120.00093 * 2 1 4 4 C 1.29829 * 119.99644 * 180.02562 * 3 2 1 5 5 C 1.47337 * 119.99514 * 179.97438 * 4 3 2 6 6 C 1.39664 * 120.19507 * 179.97438 * 5 4 3 7 7 C 1.37906 * 119.90996 * 180.02562 * 6 5 4 8 8 C 1.38515 * 120.31026 * 0.02872 * 7 6 5 9 9 C 1.38131 * 120.40220 * 359.97438 * 8 7 6 10 10 C 1.38707 * 120.08232 * 359.71793 * 9 8 7 11 11 O 1.35630 * 120.15982 * 180.29264 * 10 9 8 12 12 C 1.34816 * 116.99762 * 354.41331 * 11 10 9 13 13 H 1.08003 * 119.99461 * 5.05511 * 12 11 10 14 14 C 1.38610 * 119.99976 * 185.05995 * 12 11 10 15 15 N 1.31583 * 120.00215 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00221 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46888 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47531 * 119.99829 * 16 14 12 19 19 H 1.48502 * 109.47067 * 239.99971 * 16 14 12 20 20 H 1.08999 * 109.46672 * 60.00139 * 1 2 3 21 21 H 1.08994 * 109.47360 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47340 * 300.00551 * 1 2 3 23 23 H 0.97001 * 119.99752 * 180.27168 * 2 1 3 24 24 H 1.07997 * 120.00407 * 359.97438 * 4 3 2 25 25 H 1.08000 * 120.04164 * 359.97438 * 6 5 4 26 26 H 1.07997 * 119.84570 * 180.02562 * 7 6 5 27 27 H 1.08004 * 119.79420 * 179.97438 * 8 7 6 28 28 H 1.08001 * 119.95871 * 180.02562 * 9 8 7 29 29 H 0.97000 * 119.99805 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1655 1.2133 0.0000 4 6 3.4638 1.2131 -0.0005 5 6 4.2005 2.4891 -0.0011 6 6 5.5971 2.4939 -0.0011 7 6 6.2807 3.6916 -0.0011 8 6 5.5886 4.8915 -0.0005 9 6 4.2074 4.9018 -0.0004 10 6 3.5032 3.7068 -0.0068 11 8 2.1469 3.7151 -0.0128 12 6 1.5417 4.9140 0.1049 13 1 2.1323 5.8182 0.1160 14 6 0.1616 4.9862 0.2117 15 7 -0.5579 3.8846 0.1977 16 14 -0.6769 6.6473 0.3754 17 1 0.3477 7.7222 0.3657 18 1 -1.6121 6.8441 -0.7612 19 1 -1.4330 6.6964 1.6526 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.9500 -0.8401 -0.0040 24 1 4.0038 0.2779 -0.0005 25 1 6.1410 1.5608 -0.0002 26 1 7.3607 3.6941 -0.0015 27 1 6.1324 5.8247 -0.0001 28 1 3.6750 5.8415 -0.0004 29 1 -1.5237 3.9352 0.2721 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083919464.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:35 Heat of formation + Delta-G solvation = 52.520176 kcal Electronic energy + Delta-G solvation = -14455.324529 eV Core-core repulsion = 11959.852771 eV Total energy + Delta-G solvation = -2495.471758 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.88317 -36.28714 -35.80010 -32.36412 -31.95970 -29.55385 -28.52923 -25.27301 -24.62688 -22.16305 -21.40514 -19.67839 -17.81339 -16.88540 -15.95360 -15.28382 -14.52773 -14.01632 -13.94495 -13.59721 -13.36054 -13.18321 -12.47957 -12.25593 -11.65386 -11.58149 -11.48001 -10.96792 -10.69085 -10.65028 -10.59113 -10.36223 -9.36013 -8.83712 -8.74767 -8.35370 -7.39015 -6.59444 -6.32386 -3.88759 1.93139 2.51197 3.17582 3.19091 3.23611 3.55033 3.76815 4.04098 4.78907 5.22719 5.37218 5.58402 5.68389 5.79369 5.84603 6.05846 6.31416 6.34621 6.40780 6.59785 6.78942 6.91862 7.00614 7.22578 7.42942 7.47523 7.52573 7.89965 7.94031 8.08888 9.10655 9.36447 9.87019 10.82312 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.019149 B = 0.012797 C = 0.007707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.853691 B = 2187.487856 C = 3631.958577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.141 3.859 2 N -0.676 5.676 3 N -0.166 5.166 4 C 0.041 3.959 5 C -0.118 4.118 6 C -0.058 4.058 7 C -0.220 4.220 8 C -0.071 4.071 9 C -0.237 4.237 10 C 0.164 3.836 11 O -0.131 6.131 12 C -0.396 4.396 13 H 0.089 0.911 14 C 0.044 3.956 15 N -0.840 5.840 16 Si 0.935 3.065 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.278 1.278 20 H 0.049 0.951 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.360 0.640 24 H 0.092 0.908 25 H 0.112 0.888 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.126 0.874 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.368 -3.481 -0.123 6.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 N -0.414 5.414 3 N 0.025 4.975 4 C -0.169 4.169 5 C -0.122 4.122 6 C -0.079 4.079 7 C -0.239 4.239 8 C -0.090 4.090 9 C -0.256 4.256 10 C 0.106 3.894 11 O -0.030 6.030 12 C -0.472 4.472 13 H 0.106 0.894 14 C -0.162 4.162 15 N -0.473 5.473 16 Si 0.760 3.240 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.203 1.203 20 H 0.068 0.932 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.196 0.804 24 H 0.109 0.891 25 H 0.130 0.870 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.144 0.856 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.809 -3.177 -0.126 4.961 hybrid contribution 0.430 -0.076 0.082 0.444 sum 4.239 -3.253 -0.044 5.343 Atomic orbital electron populations 1.21045 0.78019 0.99168 1.02167 1.47925 1.05297 1.01627 1.86571 1.75064 1.08401 1.07312 1.06716 1.23704 0.90914 0.95604 1.06679 1.17479 0.91658 0.89028 1.13995 1.20636 0.91692 0.97391 0.98192 1.20423 0.98338 0.92463 1.12707 1.20797 0.93708 0.97048 0.97461 1.21115 0.94249 0.98330 1.11950 1.19469 0.85380 0.92253 0.92268 1.84193 1.12032 1.31483 1.75274 1.21443 0.90418 0.83488 1.51888 0.89362 1.25223 0.95451 0.98843 0.96702 1.70143 1.05968 1.26614 1.44565 0.85750 0.79404 0.80745 0.78108 1.19219 1.20323 1.20323 0.93210 0.92620 0.92992 0.80401 0.89110 0.87004 0.87642 0.87690 0.85591 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 2.56 11.70 59.85 0.70 3.26 15 2 N -0.68 -13.28 6.79 -16.64 -0.11 -13.40 15 3 N -0.17 -3.95 9.36 32.14 0.30 -3.65 15 4 C 0.04 0.87 10.75 -14.70 -0.16 0.71 15 5 C -0.12 -2.60 5.88 -104.88 -0.62 -3.21 15 6 C -0.06 -1.06 9.79 -39.17 -0.38 -1.45 15 7 C -0.22 -3.87 10.03 -39.60 -0.40 -4.27 15 8 C -0.07 -1.33 10.03 -39.52 -0.40 -1.73 15 9 C -0.24 -5.30 9.16 -39.45 -0.36 -5.66 15 10 C 0.16 4.11 6.66 -38.63 -0.26 3.86 15 11 O -0.13 -3.75 7.64 0.46 0.00 -3.75 15 12 C -0.40 -11.15 9.48 30.87 0.29 -10.85 15 13 H 0.09 2.32 5.21 -52.48 -0.27 2.05 15 14 C 0.04 1.20 5.49 -17.52 -0.10 1.10 15 15 N -0.84 -24.17 13.67 55.48 0.76 -23.41 15 16 Si 0.93 20.67 29.55 -169.99 -5.02 15.64 15 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 19 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 20 H 0.05 0.99 8.14 -51.93 -0.42 0.57 15 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.05 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.36 5.79 8.79 -182.60 -1.60 4.18 15 24 H 0.09 1.58 8.02 -52.49 -0.42 1.16 15 25 H 0.11 1.66 8.06 -52.49 -0.42 1.24 15 26 H 0.11 1.53 8.06 -52.49 -0.42 1.11 15 27 H 0.10 1.65 8.06 -52.48 -0.42 1.23 15 28 H 0.13 2.81 5.64 -52.49 -0.30 2.51 15 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 15 LS Contribution 261.86 15.07 3.95 3.95 Total: -1.00 -31.70 261.86 -6.07 -37.77 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -4.27 Total: 5.09 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -1.67 Total: -18.24 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.95 Total: -40.46 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: 0.00 Total: -3.75 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.70 -6.07 -37.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083919464.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.289 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds