Wall clock time and date at job start Mon Mar 30 2020 02:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40095 * 120.00093 * 2 1 4 4 C 1.29829 * 119.99644 * 180.02562 * 3 2 1 5 5 C 1.47337 * 119.99514 * 179.97438 * 4 3 2 6 6 C 1.39664 * 120.19507 * 179.97438 * 5 4 3 7 7 C 1.37906 * 119.90996 * 180.02562 * 6 5 4 8 8 C 1.38515 * 120.31026 * 0.02872 * 7 6 5 9 9 C 1.38131 * 120.40220 * 359.97438 * 8 7 6 10 10 C 1.38707 * 120.08232 * 359.71793 * 9 8 7 11 11 O 1.35630 * 120.15982 * 180.29264 * 10 9 8 12 12 C 1.34816 * 116.99762 * 354.41331 * 11 10 9 13 13 H 1.08003 * 119.99461 * 5.05511 * 12 11 10 14 14 C 1.38610 * 119.99976 * 185.05995 * 12 11 10 15 15 N 1.31583 * 120.00215 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00221 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46888 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47531 * 119.99829 * 16 14 12 19 19 H 1.48502 * 109.47067 * 239.99971 * 16 14 12 20 20 H 1.08999 * 109.46672 * 60.00139 * 1 2 3 21 21 H 1.08994 * 109.47360 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47340 * 300.00551 * 1 2 3 23 23 H 0.97001 * 119.99752 * 180.27168 * 2 1 3 24 24 H 1.07997 * 120.00407 * 359.97438 * 4 3 2 25 25 H 1.08000 * 120.04164 * 359.97438 * 6 5 4 26 26 H 1.07997 * 119.84570 * 180.02562 * 7 6 5 27 27 H 1.08004 * 119.79420 * 179.97438 * 8 7 6 28 28 H 1.08001 * 119.95871 * 180.02562 * 9 8 7 29 29 H 0.97000 * 119.99805 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1655 1.2133 0.0000 4 6 3.4638 1.2131 -0.0005 5 6 4.2005 2.4891 -0.0011 6 6 5.5971 2.4939 -0.0011 7 6 6.2807 3.6916 -0.0011 8 6 5.5886 4.8915 -0.0005 9 6 4.2074 4.9018 -0.0004 10 6 3.5032 3.7068 -0.0068 11 8 2.1469 3.7151 -0.0128 12 6 1.5417 4.9140 0.1049 13 1 2.1323 5.8182 0.1160 14 6 0.1616 4.9862 0.2117 15 7 -0.5579 3.8846 0.1977 16 14 -0.6769 6.6473 0.3754 17 1 0.3477 7.7222 0.3657 18 1 -1.6121 6.8441 -0.7612 19 1 -1.4330 6.6964 1.6526 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.9500 -0.8401 -0.0040 24 1 4.0038 0.2779 -0.0005 25 1 6.1410 1.5608 -0.0002 26 1 7.3607 3.6941 -0.0015 27 1 6.1324 5.8247 -0.0001 28 1 3.6750 5.8415 -0.0004 29 1 -1.5237 3.9352 0.2721 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083919464.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:35 Heat of formation + Delta-G solvation = 30.577969 kcal Electronic energy + Delta-G solvation = -14456.276015 eV Core-core repulsion = 11959.852771 eV Total energy + Delta-G solvation = -2496.423243 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 220.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.60202 -38.01911 -37.41059 -34.21407 -33.65786 -31.14667 -30.18820 -27.25244 -26.17046 -23.78553 -23.10342 -21.29549 -19.65194 -18.64869 -17.62450 -16.88222 -16.24226 -15.73074 -15.51653 -15.40447 -14.97329 -14.81942 -14.18871 -13.86634 -13.44297 -13.19217 -13.04814 -12.67948 -12.31565 -12.26314 -12.17136 -12.03680 -11.17136 -10.70101 -10.42846 -9.93443 -9.04649 -8.31507 -8.25504 -5.96760 0.33269 0.89024 1.36761 1.45197 1.53204 1.94949 2.22083 2.30071 2.99812 3.38743 3.67087 4.02215 4.25794 4.37144 4.46245 4.55994 4.75221 4.77847 4.89361 5.06076 5.19074 5.21530 5.37063 5.49322 5.80397 5.85404 5.90510 6.13492 6.35619 6.48602 7.10017 7.86092 7.98967 8.87653 Molecular weight = 220.10amu Principal moments of inertia in cm(-1) A = 0.019149 B = 0.012797 C = 0.007707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.853691 B = 2187.487856 C = 3631.958577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.146 3.854 2 N -0.673 5.673 3 N -0.228 5.228 4 C 0.044 3.956 5 C -0.138 4.138 6 C -0.049 4.049 7 C -0.198 4.198 8 C -0.067 4.067 9 C -0.258 4.258 10 C 0.123 3.877 11 O -0.177 6.177 12 C -0.422 4.422 13 H 0.093 0.907 14 C -0.015 4.015 15 N -0.889 5.889 16 Si 1.009 2.991 17 H -0.256 1.256 18 H -0.271 1.271 19 H -0.272 1.272 20 H 0.022 0.978 21 H 0.110 0.890 22 H 0.022 0.978 23 H 0.380 0.620 24 H 0.133 0.867 25 H 0.158 0.842 26 H 0.154 0.846 27 H 0.141 0.859 28 H 0.113 0.887 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.279 -3.779 -0.069 9.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 N -0.412 5.412 3 N -0.037 5.037 4 C -0.166 4.166 5 C -0.142 4.142 6 C -0.070 4.070 7 C -0.216 4.216 8 C -0.086 4.086 9 C -0.278 4.278 10 C 0.068 3.932 11 O -0.079 6.079 12 C -0.499 4.499 13 H 0.110 0.890 14 C -0.215 4.215 15 N -0.526 5.526 16 Si 0.830 3.170 17 H -0.180 1.180 18 H -0.196 1.196 19 H -0.197 1.197 20 H 0.041 0.959 21 H 0.128 0.872 22 H 0.041 0.959 23 H 0.218 0.782 24 H 0.150 0.850 25 H 0.175 0.825 26 H 0.172 0.828 27 H 0.159 0.841 28 H 0.131 0.869 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.788 -3.487 -0.075 7.631 hybrid contribution -0.095 -0.095 0.054 0.144 sum 6.693 -3.581 -0.021 7.591 Atomic orbital electron populations 1.21056 0.77634 1.01742 0.99401 1.47827 1.05578 1.01452 1.86380 1.75041 1.10304 1.10116 1.08219 1.24065 0.90617 0.96870 1.05082 1.18073 0.93518 0.88556 1.14004 1.21190 0.90036 0.99918 0.95837 1.21062 1.00721 0.91329 1.08491 1.21245 0.92169 0.99606 0.95630 1.21238 0.96106 0.97138 1.13296 1.20188 0.84934 0.94542 0.93567 1.84187 1.13850 1.31433 1.78445 1.21854 0.91241 0.84102 1.52666 0.89001 1.26370 0.95814 1.02993 0.96290 1.70299 1.06099 1.29046 1.47122 0.84666 0.78210 0.75923 0.78223 1.17999 1.19632 1.19703 0.95927 0.87182 0.95916 0.78162 0.85006 0.82479 0.82829 0.84102 0.86894 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 5.47 11.70 127.77 1.50 6.97 15 2 N -0.67 -26.57 6.79 -206.55 -1.40 -27.97 15 3 N -0.23 -11.13 9.36 -52.24 -0.49 -11.62 15 4 C 0.04 1.82 10.75 87.38 0.94 2.76 15 5 C -0.14 -5.94 5.88 -20.03 -0.12 -6.06 15 6 C -0.05 -1.59 9.79 22.54 0.22 -1.37 15 7 C -0.20 -5.89 10.03 22.26 0.22 -5.67 15 8 C -0.07 -2.32 10.03 22.31 0.22 -2.10 15 9 C -0.26 -11.60 9.16 22.36 0.20 -11.40 15 10 C 0.12 6.29 6.66 22.89 0.15 6.44 15 11 O -0.18 -10.73 7.64 -21.28 -0.16 -10.90 15 12 C -0.42 -25.15 9.48 67.91 0.64 -24.51 15 13 H 0.09 5.12 5.21 -2.91 -0.02 5.11 15 14 C -0.01 -0.86 5.49 84.82 0.47 -0.39 15 15 N -0.89 -54.44 13.67 21.61 0.30 -54.15 15 16 Si 1.01 44.14 29.55 68.60 2.03 46.17 15 17 H -0.26 -10.52 7.11 99.48 0.71 -9.81 15 18 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 20 H 0.02 0.94 8.14 -2.39 -0.02 0.92 15 21 H 0.11 2.82 8.14 -2.39 -0.02 2.80 15 22 H 0.02 0.96 8.14 -2.39 -0.02 0.94 15 23 H 0.38 11.72 8.79 -213.32 -1.87 9.85 15 24 H 0.13 4.18 8.02 -2.91 -0.02 4.15 15 25 H 0.16 3.66 8.06 -2.91 -0.02 3.63 15 26 H 0.15 3.24 8.06 -2.91 -0.02 3.22 15 27 H 0.14 3.80 8.06 -2.91 -0.02 3.78 15 28 H 0.11 5.22 5.64 -2.91 -0.02 5.21 15 29 H 0.27 14.98 8.31 -92.71 -0.77 14.21 15 Total: -1.00 -75.25 261.86 4.01 -71.24 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: -0.71 Total: 22.55 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 4.45 Total: -35.32 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -1.60 Total: -93.73 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.16 Total: -10.90 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -75.25 4.01 -71.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083919464.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.819 kcal (2) G-P(sol) polarization free energy of solvation -75.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds