Wall clock time and date at job start Mon Mar 30 2020 03:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99835 * 2 1 4 4 H 1.48498 * 109.47353 * 239.99742 * 3 2 1 5 5 H 1.48498 * 109.46975 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47221 * 119.99869 * 3 2 1 7 7 C 1.37873 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99718 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00390 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47466 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47229 * 174.83630 * 10 9 7 12 12 H 1.09001 * 109.59500 * 305.22603 * 11 10 9 13 13 C 1.53281 * 109.60177 * 65.54383 * 11 10 9 14 14 C 1.53119 * 109.71467 * 170.67264 * 13 11 10 15 15 C 1.53501 * 109.29478 * 290.08529 * 14 13 11 16 16 C 1.50710 * 108.05494 * 48.73977 * 15 14 13 17 17 C 1.33856 * 128.68572 * 164.14164 * 16 15 14 18 18 N 1.34422 * 107.80052 * 180.11922 * 17 16 15 19 19 C 1.30778 * 109.32226 * 359.97438 * 18 17 16 20 20 N 1.34409 * 108.55464 * 359.95993 * 19 18 17 21 21 H 0.97000 * 120.00025 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47305 * 59.99648 * 9 7 2 23 23 H 1.08998 * 109.46827 * 300.00260 * 9 7 2 24 24 H 1.08992 * 109.47289 * 54.82975 * 10 9 7 25 25 H 1.09005 * 109.46721 * 294.83079 * 10 9 7 26 26 H 1.09003 * 109.42616 * 290.74422 * 13 11 10 27 27 H 1.09001 * 109.43240 * 50.59463 * 13 11 10 28 28 H 1.08999 * 109.49853 * 50.04056 * 14 13 11 29 29 H 1.09000 * 109.49987 * 170.14489 * 14 13 11 30 30 H 1.09001 * 109.77801 * 289.08581 * 15 14 13 31 31 H 1.09000 * 109.76311 * 168.38486 * 15 14 13 32 32 H 1.08004 * 126.09515 * 0.14284 * 17 16 15 33 33 H 1.08000 * 125.72473 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4848 -4.9832 0.1316 12 1 0.8474 -4.9527 1.0154 13 6 0.6231 -5.2053 -1.1164 14 6 0.0443 -6.6227 -1.0990 15 6 1.1742 -7.6349 -1.3338 16 6 2.3102 -7.2906 -0.4052 17 6 3.3605 -8.0423 -0.0536 18 7 4.1133 -7.3240 0.7975 19 6 3.5608 -6.1530 0.9814 20 7 2.4356 -6.0912 0.2488 21 1 -0.4850 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.9307 -3.5532 0.8423 25 1 2.8102 -3.6581 -0.9305 26 1 -0.1915 -4.4811 -1.1281 27 1 1.2361 -5.0748 -2.0082 28 1 -0.4206 -6.8140 -0.1318 29 1 -0.7017 -6.7209 -1.8876 30 1 1.5132 -7.5758 -2.3681 31 1 0.8167 -8.6423 -1.1206 32 1 3.5665 -9.0465 -0.3934 33 1 3.9444 -5.3673 1.6153 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013820310.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:15 Heat of formation + Delta-G solvation = 32.694948 kcal Electronic energy + Delta-G solvation = -14784.496216 eV Core-core repulsion = 12423.997866 eV Total energy + Delta-G solvation = -2360.498350 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 220.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.05756 -37.01347 -34.22603 -32.80791 -31.05008 -29.48519 -27.32726 -25.52611 -23.10186 -21.95762 -21.25027 -20.10668 -18.81398 -17.09916 -16.10927 -15.18174 -14.56453 -14.52478 -14.14646 -13.87736 -13.59577 -13.20337 -12.92784 -12.82112 -12.18181 -11.75326 -11.43781 -10.99393 -10.95733 -10.80015 -10.67743 -10.50304 -9.96547 -9.70666 -9.62164 -9.29172 -9.04916 -8.45726 -8.07213 -6.11492 -4.14628 2.36909 3.15291 3.27410 3.32130 3.34918 3.42712 4.37202 4.69024 4.80287 4.84825 4.98498 5.09794 5.24875 5.42042 5.46751 5.49086 5.63165 5.79638 5.85623 5.93915 6.04582 6.15933 6.26786 6.33293 6.49360 6.71014 6.83137 7.01909 7.48602 7.56464 7.59479 7.85804 8.27140 8.35990 8.91073 9.50454 10.99646 Molecular weight = 220.13amu Principal moments of inertia in cm(-1) A = 0.043866 B = 0.006546 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.158982 B = 4276.611949 C = 4777.334543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.027 3.973 10 C -0.117 4.117 11 C 0.129 3.871 12 H 0.089 0.911 13 C -0.127 4.127 14 C -0.125 4.125 15 C -0.044 4.044 16 C -0.029 4.029 17 C -0.036 4.036 18 N -0.507 5.507 19 C 0.187 3.813 20 N -0.441 5.441 21 H 0.262 0.738 22 H 0.022 0.978 23 H 0.018 0.982 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.163 0.837 33 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.044 -12.340 -1.965 12.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.155 4.155 11 C 0.028 3.972 12 H 0.107 0.893 13 C -0.164 4.164 14 C -0.163 4.163 15 C -0.082 4.082 16 C -0.145 4.145 17 C -0.184 4.184 18 N -0.226 5.226 19 C -0.095 4.095 20 N -0.123 5.123 21 H 0.072 0.928 22 H 0.040 0.960 23 H 0.037 0.963 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.112 0.888 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.180 0.820 33 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.523 -12.339 -1.588 12.452 hybrid contribution -0.244 1.333 -0.295 1.387 sum 0.279 -11.006 -1.883 11.170 Atomic orbital electron populations 1.69936 1.06061 1.26949 1.50394 1.24999 0.94864 0.99320 0.95051 0.86632 0.79596 0.82932 0.78731 1.20187 1.21197 1.20145 1.21144 0.93051 0.90842 1.51297 0.92649 1.19076 0.93649 0.90716 0.97612 1.22043 0.99659 0.92211 1.01555 1.21961 0.89895 0.85645 0.99722 0.89331 1.21940 1.00166 0.97198 0.97126 1.21693 0.97552 0.94576 1.02495 1.20189 0.91507 0.99393 0.97139 1.21153 1.01596 0.88173 1.03588 1.21733 0.94038 1.00632 1.01971 1.70467 1.29888 1.03654 1.18597 1.24708 0.86776 0.97862 1.00202 1.45790 1.20045 1.12821 1.33633 0.92796 0.95973 0.96339 0.92253 0.92413 0.88758 0.90971 0.91660 0.90813 0.90391 0.90072 0.82013 0.78194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.23 9.11 -34.44 -0.31 -14.54 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.64 4.62 -27.89 -0.13 0.51 16 10 C -0.12 -2.23 4.55 -26.73 -0.12 -2.35 16 11 C 0.13 2.09 3.09 -67.80 -0.21 1.88 16 12 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 13 C -0.13 -1.83 4.75 -26.52 -0.13 -1.95 16 14 C -0.13 -1.46 5.96 -26.41 -0.16 -1.62 16 15 C -0.04 -0.50 6.31 -27.62 -0.17 -0.68 16 16 C -0.03 -0.43 6.57 -81.73 -0.54 -0.97 16 17 C -0.04 -0.55 11.84 -17.96 -0.21 -0.76 16 18 N -0.51 -8.83 11.27 -14.87 -0.17 -9.00 16 19 C 0.19 3.07 11.87 -90.72 -1.08 2.00 16 20 N -0.44 -7.06 2.98 -107.02 -0.32 -7.38 16 21 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 22 H 0.02 0.55 7.07 -51.93 -0.37 0.18 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 1.12 7.33 -51.93 -0.38 0.74 16 25 H 0.06 1.14 8.12 -51.93 -0.42 0.71 16 26 H 0.09 1.43 7.19 -51.93 -0.37 1.05 16 27 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 28 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.16 2.03 8.06 -52.48 -0.42 1.61 16 33 H 0.20 2.84 7.58 -52.49 -0.40 2.45 16 LS Contribution 270.84 15.07 4.08 4.08 Total: -1.00 -30.16 270.84 -8.70 -38.87 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -4.86 Total: -0.61 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -3.15 Total: -16.94 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.25 Total: -41.48 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.16 -8.70 -38.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013820310.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.562 kcal (2) G-P(sol) polarization free energy of solvation -30.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds